Wall clock time and date at job start Mon Mar 30 2020 04:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38403 * 120.85491 * 2 1 4 4 C 1.38300 * 119.30622 * 180.25502 * 3 2 1 5 5 N 1.31953 * 121.08603 * 359.76282 * 4 3 2 6 6 C 1.31670 * 121.87499 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.56401 * 359.97438 * 6 5 4 8 8 C 1.47847 * 120.55827 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99767 * 124.24491 * 8 7 6 10 10 N 1.34774 * 119.99944 * 304.24965 * 8 7 6 11 11 C 1.46495 * 120.00343 * 356.09605 * 10 8 7 12 12 C 1.50697 * 109.47235 * 90.00027 * 11 10 8 13 13 H 1.07998 * 120.00024 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99924 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99836 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00126 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46896 * 90.00289 * 16 14 12 18 18 H 1.48500 * 109.47262 * 210.00466 * 16 14 12 19 19 H 1.48501 * 109.47166 * 330.00368 * 16 14 12 20 20 C 1.46498 * 119.99705 * 176.37209 * 10 8 7 21 21 C 1.53000 * 117.50119 * 17.06505 * 20 10 8 22 22 C 1.52995 * 60.00164 * 252.51149 * 21 20 10 23 23 H 1.09003 * 109.46934 * 265.11222 * 1 2 3 24 24 H 1.09000 * 109.47431 * 25.11937 * 1 2 3 25 25 H 1.09008 * 109.46842 * 145.12216 * 1 2 3 26 26 H 1.08003 * 120.34218 * 0.03891 * 3 2 1 27 27 H 1.08003 * 119.46096 * 179.78463 * 4 3 2 28 28 H 1.07994 * 119.71672 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47461 * 210.00275 * 11 10 8 30 30 H 1.08996 * 109.46900 * 330.00162 * 11 10 8 31 31 H 0.96999 * 120.00415 * 179.97438 * 15 14 12 32 32 H 1.09005 * 115.55146 * 162.77955 * 20 10 8 33 33 H 1.08994 * 117.49925 * 0.02562 * 21 20 10 34 34 H 1.09007 * 117.49760 * 145.02207 * 21 20 10 35 35 H 1.09001 * 117.49915 * 252.50808 * 22 21 20 36 36 H 1.08998 * 117.51874 * 107.48463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1508 -0.0054 5 7 4.2498 0.0027 -0.0058 6 6 3.6198 -1.1534 -0.0017 7 6 2.2251 -1.2016 0.0039 8 6 1.5177 -2.4999 0.0079 9 8 0.7102 -2.7493 0.8816 10 7 1.7684 -3.4068 -0.9570 11 6 2.6768 -3.0740 -2.0570 12 6 4.0842 -3.4592 -1.6803 13 1 4.2821 -3.9074 -0.7179 14 6 5.1192 -3.2392 -2.5643 15 7 6.3473 -3.5758 -2.2357 16 14 4.7768 -2.4646 -4.2292 17 1 4.8862 -0.9876 -4.1198 18 1 5.7652 -2.9622 -5.2194 19 1 3.4067 -2.8280 -4.6719 20 6 1.1276 -4.7234 -0.9090 21 6 -0.0935 -4.8821 -0.0010 22 6 1.2411 -5.5172 0.3941 23 1 -0.3633 -0.0876 1.0240 24 1 -0.3634 0.9305 -0.4362 25 1 -0.3633 -0.8431 -0.5877 26 1 1.6965 2.1346 0.0006 27 1 4.1557 2.0764 -0.0089 28 1 4.1872 -2.0723 -0.0026 29 1 2.3783 -3.6192 -2.9524 30 1 2.6334 -2.0026 -2.2525 31 1 7.0755 -3.4215 -2.8577 32 1 1.1372 -5.2852 -1.8430 33 1 -0.4205 -4.0069 0.5603 34 1 -0.8879 -5.5483 -0.3377 35 1 1.3249 -6.6013 0.3173 36 1 1.7928 -5.0601 1.2155 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694759305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:15 Heat of formation + Delta-G solvation = 25.517182 kcal Electronic energy + Delta-G solvation = -19981.184538 eV Core-core repulsion = 17045.240464 eV Total energy + Delta-G solvation = -2935.944074 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.89370 -40.36788 -37.43481 -36.07553 -34.79251 -34.22023 -32.05813 -29.75362 -28.84357 -25.71094 -24.46033 -23.74045 -23.24910 -22.73877 -20.44178 -19.18505 -18.18026 -17.65512 -17.15216 -17.05685 -16.32502 -16.16120 -15.62496 -15.10730 -14.91170 -14.61980 -14.47962 -13.97964 -13.89454 -13.73794 -13.59170 -13.55067 -13.08017 -12.71725 -12.66437 -12.37159 -12.24380 -11.80599 -11.58286 -11.24481 -10.82702 -10.70352 -10.44007 -10.17423 -9.93885 -9.28550 -8.31813 -6.36053 -0.08632 0.31173 1.33625 1.35587 1.42925 1.59377 2.07402 2.30222 2.85317 3.01700 3.08106 3.40169 3.75125 3.77214 3.85479 3.99379 4.14803 4.16696 4.22012 4.50547 4.59241 4.61768 4.70231 4.72304 4.79987 4.84416 4.89502 4.97179 5.08601 5.15711 5.34545 5.37796 5.40669 5.77525 5.86259 6.11246 6.48284 6.64498 7.06509 7.16155 7.27781 8.83304 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.011311 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.557976 B = 2474.826999 C = 3838.821762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.012 4.012 3 C -0.177 4.177 4 C 0.105 3.895 5 N -0.524 5.524 6 C 0.143 3.857 7 C -0.204 4.204 8 C 0.568 3.432 9 O -0.560 6.560 10 N -0.562 5.562 11 C 0.221 3.779 12 C -0.531 4.531 13 H 0.039 0.961 14 C 0.033 3.967 15 N -0.929 5.929 16 Si 0.926 3.074 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.239 1.239 20 C 0.062 3.938 21 C -0.183 4.183 22 C -0.192 4.192 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.054 0.946 26 H 0.183 0.817 27 H 0.190 0.810 28 H 0.150 0.850 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.268 0.732 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 7.392 0.192 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.021 4.021 3 C -0.196 4.196 4 C -0.051 4.051 5 N -0.234 5.234 6 C -0.013 4.013 7 C -0.209 4.209 8 C 0.357 3.643 9 O -0.442 6.442 10 N -0.289 5.289 11 C 0.099 3.901 12 C -0.569 4.569 13 H 0.058 0.942 14 C -0.168 4.168 15 N -0.568 5.568 16 Si 0.750 3.250 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.162 1.162 20 C -0.042 4.042 21 C -0.220 4.220 22 C -0.231 4.231 23 H 0.103 0.897 24 H 0.124 0.876 25 H 0.073 0.927 26 H 0.200 0.800 27 H 0.207 0.793 28 H 0.167 0.833 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.939 7.239 0.528 13.973 hybrid contribution 0.148 -0.207 -0.607 0.658 sum -11.791 7.032 -0.079 13.729 Atomic orbital electron populations 1.20836 0.87996 1.03905 1.03552 1.20724 0.98164 0.91258 0.91904 1.22323 0.95004 0.99146 1.03109 1.23623 0.92974 0.96549 0.91985 1.67772 1.42061 0.99113 1.14404 1.23424 0.91028 0.96939 0.89932 1.20889 0.95459 0.94762 1.09790 1.18291 0.81068 0.83960 0.80952 1.90473 1.36143 1.79446 1.38162 1.47322 1.43736 1.12981 1.24817 1.19629 0.88010 0.96297 0.86126 1.21288 0.91259 1.41639 1.02706 0.94243 1.25563 0.94409 0.95108 1.01690 1.70008 1.00624 1.48189 1.37960 0.86024 0.79886 0.79135 0.79952 1.19946 1.20591 1.16220 1.21900 1.00469 0.85214 0.96635 1.24016 0.91132 1.04540 1.02291 1.23132 1.01757 0.99812 0.98352 0.89713 0.87647 0.92693 0.79978 0.79330 0.83256 0.93138 0.95274 0.92255 0.83980 0.85713 0.86694 0.86665 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 9.17 71.24 0.65 -1.95 16 2 C -0.01 -0.37 5.95 -19.40 -0.12 -0.49 16 3 C -0.18 -4.47 9.79 22.32 0.22 -4.25 16 4 C 0.10 3.12 11.17 84.69 0.95 4.07 16 5 N -0.52 -21.44 10.35 -194.77 -2.02 -23.46 16 6 C 0.14 6.38 9.07 85.04 0.77 7.15 16 7 C -0.20 -8.10 4.46 -19.99 -0.09 -8.19 16 8 C 0.57 23.56 5.92 86.79 0.51 24.07 16 9 O -0.56 -23.51 12.28 -3.90 -0.05 -23.56 16 10 N -0.56 -23.20 2.82 -805.54 -2.27 -25.48 16 11 C 0.22 9.80 3.84 85.63 0.33 10.13 16 12 C -0.53 -28.07 7.02 25.60 0.18 -27.90 16 13 H 0.04 2.39 7.56 -2.91 -0.02 2.37 16 14 C 0.03 1.79 5.47 84.66 0.46 2.25 16 15 N -0.93 -55.11 13.96 21.45 0.30 -54.81 16 16 Si 0.93 41.13 27.47 68.60 1.88 43.01 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 20 C 0.06 2.21 6.62 44.99 0.30 2.50 16 21 C -0.18 -5.72 9.64 30.59 0.29 -5.43 16 22 C -0.19 -6.62 9.90 30.59 0.30 -6.32 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.10 1.75 8.07 -2.39 -0.02 1.73 16 25 H 0.05 1.51 7.32 -2.38 -0.02 1.49 16 26 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 28 H 0.15 7.82 5.18 -2.91 -0.02 7.81 16 29 H 0.05 2.11 7.09 -2.38 -0.02 2.10 16 30 H 0.03 1.30 6.10 -2.39 -0.01 1.29 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.14 4.47 8.09 -2.38 -0.02 4.45 16 33 H 0.13 4.48 4.96 -26.04 -0.13 4.35 16 34 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.06 2.53 7.82 -2.39 -0.02 2.51 16 Total: -1.00 -66.98 296.68 3.53 -63.45 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.92 Total: 25.19 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.77 Total: -4.35 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -3.99 Total: -103.75 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.01 kcal Total: -66.98 3.53 -63.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694759305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.972 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds