Wall clock time and date at job start Mon Mar 30 2020 04:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86800 * 120.00199 * 2 1 4 4 H 1.48498 * 109.47561 * 240.00087 * 3 2 1 5 5 H 1.48502 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47031 * 119.99861 * 3 2 1 7 7 C 1.39889 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 167.96391 * 7 2 1 9 9 C 1.41020 * 119.99992 * 347.96463 * 7 2 1 10 10 C 1.40661 * 120.27218 * 328.80085 * 9 7 2 11 11 C 1.38005 * 119.77543 * 180.02562 * 10 9 7 12 12 N 1.39851 * 119.84092 * 180.02562 * 11 10 9 13 13 C 1.48196 * 111.00190 * 143.95460 * 12 11 10 14 14 C 1.52787 * 85.76047 * 223.19391 * 13 12 11 15 15 C 1.52885 * 121.55604 * 256.97564 * 14 13 12 16 16 O 1.44425 * 85.08829 * 256.24455 * 15 14 13 17 17 C 1.44426 * 93.61245 * 336.69150 * 16 15 14 18 18 C 1.48194 * 111.00291 * 44.26339 * 12 11 10 19 19 C 1.39600 * 120.31830 * 0.26599 * 11 10 9 20 20 C 1.38055 * 120.54713 * 359.45029 * 19 11 10 21 21 C 1.38737 * 120.22314 * 0.55230 * 20 19 11 22 22 N 1.38865 * 120.16487 * 179.74412 * 21 20 19 23 23 H 0.97003 * 120.00310 * 355.00630 * 1 2 3 24 24 H 1.08006 * 120.10954 * 359.97438 * 10 9 7 25 25 H 1.08996 * 113.83015 * 108.98829 * 13 12 11 26 26 H 1.09000 * 113.82195 * 337.40210 * 13 12 11 27 27 H 1.08993 * 113.93271 * 10.27990 * 15 14 13 28 28 H 1.08999 * 113.93090 * 142.21274 * 15 14 13 29 29 H 1.09000 * 113.92886 * 269.27162 * 17 16 15 30 30 H 1.09004 * 113.93452 * 137.34750 * 17 16 15 31 31 H 1.09005 * 113.82555 * 22.59630 * 18 12 11 32 32 H 1.08993 * 113.82925 * 251.01542 * 18 12 11 33 33 H 1.07996 * 119.72511 * 179.73395 * 19 11 10 34 34 H 1.08003 * 119.88940 * 180.27617 * 20 19 11 35 35 H 0.96997 * 119.99990 * 185.15620 * 22 21 20 36 36 H 0.97009 * 119.99841 * 5.15382 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0705 -1.2217 -0.1956 9 6 1.3265 -2.4194 0.2536 10 6 0.2073 -2.4363 1.1054 11 6 -0.4520 -3.6243 1.3474 12 7 -1.5653 -3.6425 2.1936 13 6 -2.5801 -4.6109 1.7155 14 6 -3.6043 -3.5241 2.0384 15 6 -4.4732 -3.5913 3.2946 16 8 -5.5265 -3.9975 2.3938 17 6 -4.9028 -3.3867 1.2432 18 6 -2.4722 -2.5071 1.9028 19 6 -0.0100 -4.8088 0.7554 20 6 1.0834 -4.8065 -0.0874 21 6 1.7631 -3.6251 -0.3463 22 7 2.8661 -3.6251 -1.1900 23 1 -0.4851 0.8369 0.0731 24 1 -0.1345 -1.5227 1.5692 25 1 -2.6695 -5.4996 2.3402 26 1 -2.5027 -4.8412 0.6530 27 1 -4.1716 -4.3656 3.9999 28 1 -4.6437 -2.6237 3.7666 29 1 -5.2084 -2.3548 1.0704 30 1 -4.9374 -4.0009 0.3434 31 1 -2.3622 -2.1022 0.8967 32 1 -2.4764 -1.7379 2.6750 33 1 -0.5306 -5.7337 0.9548 34 1 1.4136 -5.7283 -0.5432 35 1 3.3843 -2.8142 -1.3108 36 1 3.1182 -4.4362 -1.6586 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697131735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:49 Heat of formation + Delta-G solvation = 33.852775 kcal Electronic energy + Delta-G solvation = -19411.137434 eV Core-core repulsion = 16475.554819 eV Total energy + Delta-G solvation = -2935.582616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.40960 -40.04109 -38.40072 -35.36604 -34.50820 -31.44499 -30.86596 -28.36794 -27.61312 -27.36489 -26.44340 -24.46657 -22.82665 -21.14293 -19.51060 -19.00925 -17.83321 -17.41014 -17.22535 -16.99097 -16.85317 -16.43109 -15.79863 -15.48933 -15.02651 -14.59114 -14.17758 -13.95382 -13.70456 -13.46048 -13.33754 -13.05704 -12.91535 -12.74426 -12.32014 -12.14032 -12.12762 -11.74251 -11.36638 -11.17248 -11.03697 -10.94181 -10.60877 -9.82401 -9.20555 -8.51483 -7.72803 -6.07270 1.04698 1.26729 1.40969 1.49436 1.53411 2.27187 2.66138 2.79068 3.01325 3.29216 3.48234 3.64987 3.85711 4.04082 4.33123 4.39993 4.43208 4.57461 4.58603 4.66349 4.71622 4.75472 4.87938 4.90610 4.98015 5.11665 5.17433 5.17872 5.34353 5.44778 5.69932 5.83971 5.94190 6.13933 6.34693 6.45322 6.80853 6.97490 7.03476 7.31746 7.55241 8.52265 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.006558 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.822630 B = 4268.649682 C = 5362.127341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.036 3.964 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.072 0.928 9 C 0.040 3.960 10 C -0.162 4.162 11 C 0.024 3.976 12 N -0.446 5.446 13 C 0.042 3.958 14 C -0.157 4.157 15 C 0.072 3.928 16 O -0.400 6.400 17 C 0.053 3.947 18 C 0.030 3.970 19 C -0.203 4.203 20 C -0.178 4.178 21 C 0.103 3.897 22 N -0.874 5.874 23 H 0.279 0.721 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.393 0.607 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -3.772 1.449 6.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.527 4.527 8 H 0.090 0.910 9 C 0.035 3.965 10 C -0.184 4.184 11 C -0.073 4.073 12 N -0.162 5.162 13 C -0.085 4.085 14 C -0.158 4.158 15 C -0.004 4.004 16 O -0.320 6.320 17 C -0.024 4.024 18 C -0.097 4.097 19 C -0.225 4.225 20 C -0.202 4.202 21 C 0.000 4.000 22 N -0.416 5.416 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.221 0.779 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.535 -3.832 2.119 7.058 hybrid contribution 0.833 1.072 -1.073 1.730 sum -4.702 -2.760 1.046 5.552 Atomic orbital electron populations 1.69867 1.08338 1.29754 1.38724 1.26437 0.95508 1.03470 0.92206 0.85430 0.78718 0.77018 0.79528 1.18666 1.20007 1.19259 1.19275 0.95684 0.91607 1.46087 0.91023 1.17463 0.94284 0.91796 0.92997 1.20649 1.00687 0.95276 1.01832 1.19225 0.96760 0.94310 0.96967 1.65938 1.01922 1.05540 1.42834 1.23622 0.88579 0.95979 1.00310 1.24749 0.94411 0.97615 0.99006 1.23756 0.82566 1.01765 0.92309 1.89664 1.46624 1.74888 1.20781 1.23921 0.87950 0.99582 0.90968 1.23625 0.90755 0.94393 1.00966 1.20276 1.01626 0.95916 1.04636 1.20193 0.99761 0.95643 1.04648 1.18229 0.92214 0.94030 0.95493 1.41790 1.31980 1.15073 1.52794 0.91032 0.88379 0.88043 0.90720 0.87806 0.88262 0.88507 0.88179 0.91907 0.89777 0.86898 0.86535 0.77909 0.77874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.55 11.08 21.82 0.24 -43.31 16 2 C 0.04 1.80 5.21 85.23 0.44 2.24 16 3 Si 0.97 38.73 29.58 68.60 2.03 40.76 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.49 -25.93 8.40 23.35 0.20 -25.73 16 8 H 0.07 3.56 6.81 -2.91 -0.02 3.54 16 9 C 0.04 2.10 5.52 -21.18 -0.12 1.99 16 10 C -0.16 -8.42 7.48 22.81 0.17 -8.25 16 11 C 0.02 1.12 5.41 38.14 0.21 1.33 16 12 N -0.45 -17.41 6.35 -728.70 -4.63 -22.04 16 13 C 0.04 1.34 6.54 85.98 0.56 1.90 16 14 C -0.16 -4.47 1.43 -52.35 -0.08 -4.54 16 15 C 0.07 1.75 9.00 71.93 0.65 2.40 16 16 O -0.40 -10.90 12.45 -148.98 -1.86 -12.76 16 17 C 0.05 1.31 9.00 71.93 0.65 1.96 16 18 C 0.03 1.08 6.66 85.98 0.57 1.66 16 19 C -0.20 -8.73 8.75 22.56 0.20 -8.53 16 20 C -0.18 -7.66 9.87 22.35 0.22 -7.44 16 21 C 0.10 4.83 6.79 38.97 0.26 5.09 16 22 N -0.87 -33.77 8.97 -50.31 -0.45 -34.22 16 23 H 0.28 13.42 8.30 -92.71 -0.77 12.65 16 24 H 0.10 5.43 5.84 -2.91 -0.02 5.41 16 25 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.07 2.45 7.22 -2.39 -0.02 2.43 16 27 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.06 2.61 7.55 -2.38 -0.02 2.59 16 32 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.11 4.26 7.07 -2.91 -0.02 4.24 16 34 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.39 15.05 7.13 -92.71 -0.66 14.39 16 36 H 0.39 12.36 8.84 -92.70 -0.82 11.54 16 Total: -1.00 -60.04 295.50 -1.09 -61.13 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: -0.36 Total: 46.38 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 3.94 Total: -35.94 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -4.84 Total: -99.57 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -1.86 Total: -12.76 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -60.04 -1.09 -61.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697131735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.981 kcal (2) G-P(sol) polarization free energy of solvation -60.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds