Wall clock time and date at job start Mon Mar 30 2020 04:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46959 * 2 1 4 4 C 1.50705 * 109.47271 * 119.99599 * 2 1 3 5 5 H 1.08000 * 119.99754 * 120.00032 * 4 2 1 6 6 C 1.37870 * 120.00065 * 300.00329 * 4 2 1 7 7 N 1.31522 * 120.00211 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00109 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46891 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46881 * 119.99807 * 8 6 4 11 11 H 1.48494 * 109.47188 * 240.00326 * 8 6 4 12 12 N 1.46499 * 109.47533 * 240.00089 * 2 1 3 13 13 C 1.34773 * 119.99954 * 84.99480 * 12 2 1 14 14 O 1.21550 * 120.00329 * 0.02562 * 13 12 2 15 15 C 1.47854 * 119.99850 * 180.02562 * 13 12 2 16 16 C 1.39608 * 120.13101 * 0.02562 * 15 13 12 17 17 C 1.37942 * 119.83319 * 179.97438 * 16 15 13 18 18 C 1.38377 * 120.16329 * 0.27389 * 17 16 15 19 19 C 1.38297 * 120.33935 * 359.44561 * 18 17 16 20 20 C 1.38206 * 120.04872 * 0.55434 * 19 18 17 21 21 C 1.51163 * 108.32409 * 179.68500 * 20 19 18 22 22 N 1.48055 * 105.65863 * 342.52154 * 21 20 19 23 23 C 1.48052 * 103.84807 * 27.55643 * 22 21 20 24 24 H 1.09002 * 109.46536 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47051 * 300.00121 * 1 2 3 26 26 H 1.08997 * 109.46665 * 60.00388 * 1 2 3 27 27 H 0.96999 * 120.00013 * 180.02562 * 7 6 4 28 28 H 0.97006 * 119.99953 * 265.00114 * 12 2 1 29 29 H 1.07999 * 120.08441 * 359.97438 * 16 15 13 30 30 H 1.08002 * 119.91513 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.82517 * 179.71744 * 18 17 16 32 32 H 1.09003 * 110.20750 * 101.56492 * 21 20 19 33 33 H 1.08996 * 110.20998 * 223.46771 * 21 20 19 34 34 H 1.00897 * 111.00185 * 146.89905 * 22 21 20 35 35 H 1.09006 * 110.20758 * 213.37665 * 23 22 21 36 36 H 1.08999 * 110.20769 * 91.48014 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1466 -2.2868 3.6039 10 1 3.1467 -0.1871 4.8165 11 1 1.1662 -1.5866 4.8161 12 7 2.0185 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8584 1.1612 -2.4116 15 6 2.6395 -0.7153 -3.5644 16 6 2.9715 -2.0701 -3.5050 17 6 3.4298 -2.7145 -4.6353 18 6 3.5662 -2.0201 -5.8244 19 6 3.2339 -0.6794 -5.8926 20 6 2.7737 -0.0224 -4.7671 21 6 2.5010 1.4180 -5.1359 22 7 3.2270 1.6498 -6.4052 23 6 3.2769 0.3107 -7.0346 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 0.7095 1.1619 3.4844 28 1 2.2492 -1.6318 -1.1526 29 1 2.8697 -2.6122 -2.5765 30 1 3.6873 -3.7624 -4.5907 31 1 3.9298 -2.5290 -6.7049 32 1 1.4318 1.5739 -5.2797 33 1 2.8781 2.0833 -4.3593 34 1 2.7320 2.3061 -6.9902 35 1 4.2019 0.1943 -7.5993 36 1 2.4159 0.1694 -7.6879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703037276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:33 Heat of formation + Delta-G solvation = -2.183312 kcal Electronic energy + Delta-G solvation = -18998.488172 eV Core-core repulsion = 16061.342914 eV Total energy + Delta-G solvation = -2937.145258 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46757 -38.46992 -36.25829 -34.81718 -32.49392 -31.49753 -30.07769 -28.93096 -27.29545 -25.27159 -24.20849 -22.40099 -21.30825 -20.62170 -19.37120 -17.56354 -16.54387 -15.95918 -15.59395 -15.42647 -15.13719 -14.69371 -14.20117 -14.02623 -13.54430 -13.22627 -12.97464 -12.59672 -12.41774 -12.22896 -11.97075 -11.69348 -11.32176 -11.27972 -11.08799 -10.96654 -10.75015 -10.30642 -10.24942 -9.27957 -9.09873 -9.04132 -8.83130 -8.56296 -8.27879 -7.90977 -6.13199 -4.22509 1.00009 1.29137 3.23414 3.26192 3.31315 3.33984 4.00301 4.11414 4.18909 4.33470 4.37595 4.58005 4.91939 5.09448 5.19426 5.19537 5.33590 5.39401 5.48891 5.63507 5.79360 5.89219 6.10317 6.28824 6.35235 6.40695 6.62703 6.81049 6.86258 6.95569 7.12377 7.13804 7.43116 7.55134 7.68541 7.90454 8.13530 8.63479 8.76578 9.08067 9.45032 10.92895 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033649 B = 0.004735 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.915116 B = 5912.595548 C = 6460.123260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.540 3.460 14 O -0.548 6.548 15 C -0.104 4.104 16 C -0.086 4.086 17 C -0.126 4.126 18 C -0.085 4.085 19 C -0.121 4.121 20 C -0.043 4.043 21 C 0.081 3.919 22 N -0.662 5.662 23 C 0.082 3.918 24 H 0.026 0.974 25 H 0.091 0.909 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.344 0.656 35 H 0.089 0.911 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -5.732 -16.565 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.428 6.428 15 C -0.108 4.108 16 C -0.105 4.105 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.121 4.121 20 C -0.045 4.045 21 C -0.047 4.047 22 N -0.290 5.290 23 C -0.047 4.047 24 H 0.045 0.955 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.221 0.779 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.160 0.840 35 H 0.107 0.893 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.653 -4.704 -16.133 17.198 hybrid contribution -0.557 -1.188 0.646 1.463 sum 3.096 -5.892 -15.488 16.857 Atomic orbital electron populations 1.22075 0.98354 0.99143 1.00943 1.18792 0.91082 0.94082 0.79840 0.93180 1.21244 1.32422 1.13245 0.90291 0.92022 1.24886 0.94782 0.94948 0.99065 1.69915 1.35906 1.22436 1.23797 0.86385 0.78598 0.79534 0.82538 1.19727 1.20847 1.20865 1.46496 1.64478 1.13529 1.10398 1.18224 0.79015 0.86850 0.83314 1.90700 1.51417 1.15505 1.85128 1.19801 1.03097 0.94089 0.93789 1.21361 0.96957 0.93175 0.99004 1.20993 1.00926 1.00084 0.92444 1.20566 0.99031 0.92601 0.98141 1.20555 1.01312 0.94494 0.95757 1.20471 0.95801 0.95892 0.92320 1.21481 0.97166 0.93292 0.92761 1.63597 1.52149 1.07646 1.05638 1.21380 1.01692 0.87444 0.94195 0.95465 0.89075 0.96622 0.92609 0.77881 0.84945 0.85195 0.85860 0.91920 0.87389 0.84010 0.89329 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.48 7.58 -51.92 -0.39 1.09 16 4 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.70 -15.02 5.02 -55.87 -0.28 -15.30 16 13 C 0.54 11.39 7.74 -12.33 -0.10 11.29 16 14 O -0.55 -13.22 14.53 5.32 0.08 -13.14 16 15 C -0.10 -1.78 5.87 -105.00 -0.62 -2.40 16 16 C -0.09 -1.19 9.54 -39.18 -0.37 -1.57 16 17 C -0.13 -1.44 10.03 -39.64 -0.40 -1.84 16 18 C -0.08 -0.95 10.04 -39.51 -0.40 -1.34 16 19 C -0.12 -1.58 6.26 -104.36 -0.65 -2.23 16 20 C -0.04 -0.69 6.10 -103.96 -0.63 -1.32 16 21 C 0.08 1.23 6.36 -4.11 -0.03 1.20 16 22 N -0.66 -8.08 7.72 -114.02 -0.88 -8.96 16 23 C 0.08 0.88 7.46 -4.09 -0.03 0.85 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 28 H 0.39 7.17 6.57 -40.82 -0.27 6.90 16 29 H 0.13 1.63 6.41 -52.49 -0.34 1.30 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.11 1.89 7.28 -51.93 -0.38 1.51 16 34 H 0.34 3.25 8.92 -39.29 -0.35 2.90 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 300.39 15.07 4.53 4.53 Total: -1.00 -31.18 300.39 -8.94 -40.13 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.54 Total: 8.30 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.45 Total: -6.88 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.53 Total: -48.54 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.18 -8.94 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703037276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.942 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds