Wall clock time and date at job start Mon Mar 30 2020 04:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46959 * 2 1 4 4 C 1.50705 * 109.47271 * 119.99599 * 2 1 3 5 5 H 1.08000 * 119.99754 * 120.00032 * 4 2 1 6 6 C 1.37870 * 120.00065 * 300.00329 * 4 2 1 7 7 N 1.31522 * 120.00211 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00109 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46891 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46881 * 119.99807 * 8 6 4 11 11 H 1.48494 * 109.47188 * 240.00326 * 8 6 4 12 12 N 1.46499 * 109.47533 * 240.00089 * 2 1 3 13 13 C 1.34773 * 119.99954 * 84.99480 * 12 2 1 14 14 O 1.21550 * 120.00329 * 0.02562 * 13 12 2 15 15 C 1.47854 * 119.99850 * 180.02562 * 13 12 2 16 16 C 1.39608 * 120.13101 * 0.02562 * 15 13 12 17 17 C 1.37942 * 119.83319 * 179.97438 * 16 15 13 18 18 C 1.38377 * 120.16329 * 0.27389 * 17 16 15 19 19 C 1.38297 * 120.33935 * 359.44561 * 18 17 16 20 20 C 1.38206 * 120.04872 * 0.55434 * 19 18 17 21 21 C 1.51163 * 108.32409 * 179.68500 * 20 19 18 22 22 N 1.48055 * 105.65863 * 342.52154 * 21 20 19 23 23 C 1.48052 * 103.84807 * 27.55643 * 22 21 20 24 24 H 1.09002 * 109.46536 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47051 * 300.00121 * 1 2 3 26 26 H 1.08997 * 109.46665 * 60.00388 * 1 2 3 27 27 H 0.96999 * 120.00013 * 180.02562 * 7 6 4 28 28 H 0.97006 * 119.99953 * 265.00114 * 12 2 1 29 29 H 1.07999 * 120.08441 * 359.97438 * 16 15 13 30 30 H 1.08002 * 119.91513 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.82517 * 179.71744 * 18 17 16 32 32 H 1.09003 * 110.20750 * 101.56492 * 21 20 19 33 33 H 1.08996 * 110.20998 * 223.46771 * 21 20 19 34 34 H 1.00897 * 111.00185 * 146.89905 * 22 21 20 35 35 H 1.09006 * 110.20758 * 213.37665 * 23 22 21 36 36 H 1.08999 * 110.20769 * 91.48014 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1466 -2.2868 3.6039 10 1 3.1467 -0.1871 4.8165 11 1 1.1662 -1.5866 4.8161 12 7 2.0185 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8584 1.1612 -2.4116 15 6 2.6395 -0.7153 -3.5644 16 6 2.9715 -2.0701 -3.5050 17 6 3.4298 -2.7145 -4.6353 18 6 3.5662 -2.0201 -5.8244 19 6 3.2339 -0.6794 -5.8926 20 6 2.7737 -0.0224 -4.7671 21 6 2.5010 1.4180 -5.1359 22 7 3.2270 1.6498 -6.4052 23 6 3.2769 0.3107 -7.0346 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 0.7095 1.1619 3.4844 28 1 2.2492 -1.6318 -1.1526 29 1 2.8697 -2.6122 -2.5765 30 1 3.6873 -3.7624 -4.5907 31 1 3.9298 -2.5290 -6.7049 32 1 1.4318 1.5739 -5.2797 33 1 2.8781 2.0833 -4.3593 34 1 2.7320 2.3061 -6.9902 35 1 4.2019 0.1943 -7.5993 36 1 2.4159 0.1694 -7.6879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703037276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:32 Heat of formation + Delta-G solvation = -25.045839 kcal Electronic energy + Delta-G solvation = -18999.479565 eV Core-core repulsion = 16061.342914 eV Total energy + Delta-G solvation = -2938.136651 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63547 -40.02466 -37.29226 -36.75025 -34.39045 -32.75724 -31.15038 -30.66555 -28.41299 -27.37093 -25.40914 -23.75364 -22.55174 -22.02001 -21.06253 -19.13113 -17.79145 -17.57603 -17.08643 -16.57168 -16.48792 -16.17285 -15.71195 -15.47445 -14.77089 -14.64291 -14.43317 -14.10976 -13.75463 -13.51266 -13.26820 -13.10076 -12.93724 -12.86698 -12.75666 -12.39580 -12.31458 -12.25180 -12.11847 -11.12852 -10.78444 -10.61381 -10.25552 -10.02792 -9.68859 -9.25996 -8.19456 -6.37491 -0.13319 0.28205 1.44079 1.44873 1.57295 1.94489 2.31976 2.55153 2.82189 3.11251 3.21213 3.42514 3.53527 3.82923 4.04518 4.30680 4.32155 4.44835 4.49841 4.58096 4.70895 4.83760 4.87452 4.88208 5.01274 5.05198 5.27369 5.32180 5.37666 5.42093 5.56986 5.60028 5.65703 5.86220 5.91173 6.05969 6.29926 6.69321 6.89212 7.28653 7.46637 8.87404 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033649 B = 0.004735 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.915116 B = 5912.595548 C = 6460.123260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.698 5.698 13 C 0.535 3.465 14 O -0.591 6.591 15 C -0.135 4.135 16 C -0.090 4.090 17 C -0.115 4.115 18 C -0.070 4.070 19 C -0.123 4.123 20 C -0.074 4.074 21 C 0.085 3.915 22 N -0.667 5.667 23 C 0.083 3.917 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.010 0.990 27 H 0.266 0.734 28 H 0.403 0.597 29 H 0.143 0.857 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.359 0.641 35 H 0.111 0.889 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -8.993 -18.388 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.347 5.347 13 C 0.324 3.676 14 O -0.474 6.474 15 C -0.138 4.138 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.088 4.088 19 C -0.124 4.124 20 C -0.076 4.076 21 C -0.044 4.044 22 N -0.297 5.297 23 C -0.045 4.045 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.240 0.760 29 H 0.161 0.839 30 H 0.188 0.812 31 H 0.185 0.815 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.129 0.871 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.062 -7.997 -17.992 20.329 hybrid contribution -0.962 -0.165 1.091 1.464 sum 4.100 -8.162 -16.901 19.211 Atomic orbital electron populations 1.21888 0.98129 0.99529 0.99553 1.18401 0.91244 0.91943 0.81750 0.98406 1.21551 1.32687 1.13625 0.90676 0.90781 1.25828 0.94788 0.95570 1.02387 1.70066 1.36984 1.23932 1.24631 0.85246 0.78115 0.78498 0.78166 1.18247 1.20987 1.20264 1.46216 1.64794 1.14150 1.09535 1.18965 0.77882 0.86514 0.84285 1.90666 1.53218 1.17597 1.85941 1.19567 1.06394 0.95674 0.92204 1.21570 0.96814 0.91733 1.00797 1.21469 0.98790 1.01796 0.91237 1.21113 0.96492 0.91660 0.99522 1.20966 1.00500 0.95728 0.95178 1.20662 0.97301 0.96394 0.93238 1.21257 0.96885 0.92896 0.93387 1.63529 1.51881 1.09317 1.04958 1.21539 1.03821 0.85557 0.93604 0.93967 0.91278 0.97105 0.92486 0.76043 0.83916 0.81150 0.81536 0.92548 0.91214 0.82413 0.87058 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 14.53 2.56 44.25 0.11 14.65 16 3 H 0.00 -0.12 7.58 -2.38 -0.02 -0.14 16 4 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 8 Si 0.98 42.25 29.54 68.60 2.03 44.28 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.70 -30.97 5.02 -448.96 -2.25 -33.22 16 13 C 0.54 23.78 7.74 86.79 0.67 24.46 16 14 O -0.59 -30.94 14.53 -3.87 -0.06 -31.00 16 15 C -0.13 -4.67 5.87 -20.11 -0.12 -4.78 16 16 C -0.09 -2.33 9.54 22.53 0.21 -2.12 16 17 C -0.12 -2.11 10.03 22.23 0.22 -1.88 16 18 C -0.07 -1.22 10.04 22.32 0.22 -1.00 16 19 C -0.12 -2.88 6.26 -19.70 -0.12 -3.00 16 20 C -0.07 -2.38 6.10 -19.43 -0.12 -2.49 16 21 C 0.08 2.69 6.36 85.48 0.54 3.24 16 22 N -0.67 -15.79 7.72 -514.66 -3.97 -19.76 16 23 C 0.08 1.53 7.46 85.50 0.64 2.17 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.40 14.98 6.57 -92.70 -0.61 14.37 16 29 H 0.14 3.24 6.41 -2.91 -0.02 3.22 16 30 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.71 7.28 -2.39 -0.02 2.69 16 34 H 0.36 6.48 8.92 -89.70 -0.80 5.68 16 35 H 0.11 1.59 8.14 -2.38 -0.02 1.58 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.18 300.39 -0.70 -72.88 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.29 Total: 24.99 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.61 Total: -5.09 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -5.98 Total: -106.06 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.06 Total: -31.00 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -72.18 -0.70 -72.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703037276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.833 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds