Wall clock time and date at job start Mon Mar 30 2020 04:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48509 * 109.46888 * 85.66292 * 3 2 1 5 5 H 1.48496 * 109.47386 * 325.66721 * 3 2 1 6 6 H 1.48501 * 109.46963 * 205.65981 * 3 2 1 7 7 C 1.39931 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 36.15193 * 7 2 1 9 9 C 1.41413 * 119.99864 * 216.15842 * 7 2 1 10 10 C 1.40771 * 120.20909 * 21.30041 * 9 7 2 11 11 C 1.37651 * 119.88453 * 179.71946 * 10 9 7 12 12 C 1.38522 * 120.32001 * 0.55782 * 11 10 9 13 13 C 1.39257 * 120.43028 * 359.72108 * 12 11 10 14 14 N 1.39936 * 119.94650 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99463 * 213.77423 * 14 13 12 16 16 O 1.21278 * 120.00044 * 4.55873 * 15 14 13 17 17 C 1.50697 * 119.99580 * 184.55780 * 15 14 13 18 18 H 1.09006 * 115.55175 * 34.32999 * 17 15 14 19 19 C 1.52999 * 117.49783 * 248.62580 * 17 15 14 20 20 C 1.53005 * 117.50040 * 180.02562 * 17 15 14 21 21 H 1.08992 * 117.49757 * 214.97937 * 20 17 15 22 22 C 1.52997 * 117.49379 * 359.97438 * 20 17 15 23 23 N 1.46901 * 109.46966 * 184.99827 * 22 20 17 24 24 C 1.38281 * 120.10120 * 359.97438 * 13 12 11 25 25 H 0.97007 * 119.99908 * 185.09397 * 1 2 3 26 26 H 1.08007 * 120.05934 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.83856 * 180.29648 * 11 10 9 28 28 H 1.07999 * 119.79046 * 179.69178 * 12 11 10 29 29 H 0.96994 * 119.99924 * 33.78244 * 14 13 12 30 30 H 1.09001 * 117.50177 * 359.97438 * 19 17 15 31 31 H 1.09004 * 117.50083 * 145.02252 * 19 17 15 32 32 H 1.09003 * 109.47321 * 304.99864 * 22 20 17 33 33 H 1.09000 * 109.47637 * 65.00069 * 22 20 17 34 34 H 1.00894 * 111.00269 * 179.97438 * 23 22 20 35 35 H 1.00901 * 111.00038 * 303.95550 * 23 22 20 36 36 H 1.08003 * 120.16002 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3980 2.0994 1.3962 5 1 1.4885 2.6245 -0.7896 6 1 3.5826 1.4155 -0.6063 7 6 2.0080 -1.2118 -0.0005 8 1 1.6240 -2.0568 -0.5527 9 6 3.2178 -1.3300 0.7220 10 6 3.5034 -0.4410 1.7755 11 6 4.6805 -0.5658 2.4781 12 6 5.5915 -1.5551 2.1463 13 6 5.3251 -2.4380 1.1028 14 7 6.2528 -3.4333 0.7758 15 6 6.4030 -3.8194 -0.5068 16 8 5.7952 -3.2480 -1.3871 17 6 7.3261 -4.9609 -0.8468 18 1 7.3766 -5.7608 -0.1080 19 6 8.6051 -4.6294 -1.6182 20 6 7.4539 -5.3512 -2.3207 21 1 7.5886 -6.4078 -2.5517 22 6 6.6343 -4.5528 -3.3364 23 7 6.7953 -5.1464 -4.6704 24 6 4.1453 -2.3326 0.3893 25 1 -0.4850 -0.8368 0.0746 26 1 2.7983 0.3350 2.0347 27 1 4.8967 0.1136 3.2893 28 1 6.5146 -1.6421 2.7001 29 1 6.7877 -3.8454 1.4722 30 1 8.7787 -3.5857 -1.8801 31 1 9.4975 -5.2112 -1.3869 32 1 5.5820 -4.5761 -3.0529 33 1 6.9831 -3.5203 -3.3537 34 1 6.2629 -4.6369 -5.3596 35 1 7.7693 -5.1955 -4.9293 36 1 3.9379 -3.0165 -0.4205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715117092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:50 Heat of formation + Delta-G solvation = 3.782130 kcal Electronic energy + Delta-G solvation = -18897.549451 eV Core-core repulsion = 15960.662874 eV Total energy + Delta-G solvation = -2936.886577 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18647 -37.97616 -36.50316 -34.48454 -33.49131 -33.17705 -30.11310 -28.73323 -25.50291 -24.89078 -24.21923 -21.50914 -20.86248 -20.60939 -19.41086 -18.28353 -17.00072 -16.18153 -15.62272 -15.41751 -15.11492 -14.55844 -14.00379 -13.95329 -13.74324 -13.43552 -13.00374 -12.70216 -12.42024 -12.37540 -11.93742 -11.40943 -11.38685 -11.11260 -10.69843 -10.48156 -10.32712 -10.27550 -10.05713 -9.64664 -9.48763 -9.02930 -8.81990 -8.62401 -7.70683 -7.40152 -7.09876 -4.47009 2.38542 2.73605 3.03189 3.23884 3.38870 3.46268 3.57613 3.79874 4.05279 4.32270 4.45069 4.75619 4.79791 5.04018 5.13665 5.33714 5.46585 5.56887 5.67275 5.85304 5.98582 6.06212 6.27750 6.36586 6.55711 6.76035 6.87731 6.91633 7.14453 7.36861 7.44392 7.51859 7.58464 7.71580 7.85625 7.99271 8.11650 8.43147 8.57098 8.73000 8.81794 9.87916 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.005583 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.663775 B = 5013.703030 C = 5780.110627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.058 3.942 3 Si 1.062 2.938 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.260 4.260 11 C -0.059 4.059 12 C -0.281 4.281 13 C 0.167 3.833 14 N -0.666 5.666 15 C 0.532 3.468 16 O -0.511 6.511 17 C -0.185 4.185 18 H 0.123 0.877 19 C -0.156 4.156 20 C -0.113 4.113 21 H 0.118 0.882 22 C 0.095 3.905 23 N -0.855 5.855 24 C -0.212 4.212 25 H 0.291 0.709 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.400 0.600 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.343 0.657 35 H 0.333 0.667 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.812 -7.072 -1.626 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.166 4.166 3 Si 0.886 3.114 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.279 4.279 11 C -0.077 4.077 12 C -0.302 4.302 13 C 0.075 3.925 14 N -0.309 5.309 15 C 0.318 3.682 16 O -0.386 6.386 17 C -0.207 4.207 18 H 0.141 0.859 19 C -0.194 4.194 20 C -0.132 4.132 21 H 0.136 0.864 22 C -0.035 4.035 23 N -0.385 5.385 24 C -0.233 4.233 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.234 0.766 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.711 -5.751 -2.054 14.102 hybrid contribution 0.812 -1.138 0.403 1.455 sum 13.523 -6.889 -1.651 15.266 Atomic orbital electron populations 1.70560 1.08846 1.33183 1.28509 1.27280 0.95120 1.04699 0.89516 0.83806 0.76362 0.73221 0.78011 1.19884 1.21216 1.18916 1.20539 1.05373 1.00030 1.28757 0.90358 1.17520 0.91133 0.90433 0.90544 1.21024 0.99711 1.05522 1.01675 1.20354 0.93843 0.96041 0.97506 1.19967 1.01855 1.02752 1.05638 1.17505 0.88722 0.89510 0.96748 1.43456 1.40164 1.38996 1.08328 1.19682 0.82222 0.83610 0.82651 1.90746 1.46628 1.54696 1.46530 1.22300 1.00817 1.00251 0.97371 0.85858 1.23111 0.91444 1.02161 1.02671 1.22362 0.99502 1.00540 0.90788 0.86445 1.21472 1.01250 0.94199 0.86530 1.58799 1.15024 1.60145 1.04508 1.20872 0.93251 1.05342 1.03871 0.89807 0.88093 0.88647 0.88978 0.76627 0.88330 0.87868 0.89013 0.94419 0.84509 0.85561 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.23 13.65 55.55 0.76 -20.48 16 2 C 0.06 1.54 5.11 -17.35 -0.09 1.45 16 3 Si 1.06 24.65 25.78 -169.99 -4.38 20.27 16 4 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.56 9.29 -37.74 -0.35 -14.91 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.11 2.89 5.20 -106.85 -0.56 2.33 16 10 C -0.26 -6.51 7.70 -38.84 -0.30 -6.81 16 11 C -0.06 -1.30 10.02 -39.69 -0.40 -1.70 16 12 C -0.28 -5.96 9.97 -39.10 -0.39 -6.35 16 13 C 0.17 3.70 6.27 -83.76 -0.53 3.17 16 14 N -0.67 -11.56 5.34 -9.91 -0.05 -11.62 16 15 C 0.53 9.20 7.34 -10.98 -0.08 9.12 16 16 O -0.51 -10.89 10.78 5.56 0.06 -10.83 16 17 C -0.19 -2.28 6.19 -91.77 -0.57 -2.85 16 18 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 19 C -0.16 -1.62 9.88 -26.75 -0.26 -1.88 16 20 C -0.11 -1.33 5.95 -90.64 -0.54 -1.87 16 21 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 22 C 0.10 1.34 5.33 -3.83 -0.02 1.32 16 23 N -0.86 -9.87 9.62 -10.37 -0.10 -9.97 16 24 C -0.21 -5.42 8.39 -38.69 -0.32 -5.75 16 25 H 0.29 7.59 8.73 -40.82 -0.36 7.23 16 26 H 0.10 2.50 4.95 -52.48 -0.26 2.24 16 27 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.40 5.32 8.82 -40.82 -0.36 4.96 16 30 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.58 6.92 -51.93 -0.36 1.23 16 33 H 0.04 0.59 7.29 -51.93 -0.38 0.21 16 34 H 0.34 3.65 9.08 -39.29 -0.36 3.29 16 35 H 0.33 3.15 8.99 -39.29 -0.35 2.80 16 36 H 0.11 2.88 6.41 -52.48 -0.34 2.54 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -30.42 300.37 -8.14 -38.55 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -4.54 Total: 14.27 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -4.40 Total: -24.73 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.61 Total: -42.06 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.83 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.38 Total: 20.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.42 -8.14 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715117092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.335 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds