Wall clock time and date at job start Mon Mar 30 2020 04:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48509 * 109.46888 * 85.66292 * 3 2 1 5 5 H 1.48496 * 109.47386 * 325.66721 * 3 2 1 6 6 H 1.48501 * 109.46963 * 205.65981 * 3 2 1 7 7 C 1.39931 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 36.15193 * 7 2 1 9 9 C 1.41413 * 119.99864 * 216.15842 * 7 2 1 10 10 C 1.40771 * 120.20909 * 21.30041 * 9 7 2 11 11 C 1.37651 * 119.88453 * 179.71946 * 10 9 7 12 12 C 1.38522 * 120.32001 * 0.55782 * 11 10 9 13 13 C 1.39257 * 120.43028 * 359.72108 * 12 11 10 14 14 N 1.39936 * 119.94650 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99463 * 213.77423 * 14 13 12 16 16 O 1.21278 * 120.00044 * 4.55873 * 15 14 13 17 17 C 1.50697 * 119.99580 * 184.55780 * 15 14 13 18 18 H 1.09006 * 115.55175 * 34.32999 * 17 15 14 19 19 C 1.52999 * 117.49783 * 248.62580 * 17 15 14 20 20 C 1.53005 * 117.50040 * 180.02562 * 17 15 14 21 21 H 1.08992 * 117.49757 * 214.97937 * 20 17 15 22 22 C 1.52997 * 117.49379 * 359.97438 * 20 17 15 23 23 N 1.46901 * 109.46966 * 184.99827 * 22 20 17 24 24 C 1.38281 * 120.10120 * 359.97438 * 13 12 11 25 25 H 0.97007 * 119.99908 * 185.09397 * 1 2 3 26 26 H 1.08007 * 120.05934 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.83856 * 180.29648 * 11 10 9 28 28 H 1.07999 * 119.79046 * 179.69178 * 12 11 10 29 29 H 0.96994 * 119.99924 * 33.78244 * 14 13 12 30 30 H 1.09001 * 117.50177 * 359.97438 * 19 17 15 31 31 H 1.09004 * 117.50083 * 145.02252 * 19 17 15 32 32 H 1.09003 * 109.47321 * 304.99864 * 22 20 17 33 33 H 1.09000 * 109.47637 * 65.00069 * 22 20 17 34 34 H 1.00894 * 111.00269 * 179.97438 * 23 22 20 35 35 H 1.00901 * 111.00038 * 303.95550 * 23 22 20 36 36 H 1.08003 * 120.16002 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3980 2.0994 1.3962 5 1 1.4885 2.6245 -0.7896 6 1 3.5826 1.4155 -0.6063 7 6 2.0080 -1.2118 -0.0005 8 1 1.6240 -2.0568 -0.5527 9 6 3.2178 -1.3300 0.7220 10 6 3.5034 -0.4410 1.7755 11 6 4.6805 -0.5658 2.4781 12 6 5.5915 -1.5551 2.1463 13 6 5.3251 -2.4380 1.1028 14 7 6.2528 -3.4333 0.7758 15 6 6.4030 -3.8194 -0.5068 16 8 5.7952 -3.2480 -1.3871 17 6 7.3261 -4.9609 -0.8468 18 1 7.3766 -5.7608 -0.1080 19 6 8.6051 -4.6294 -1.6182 20 6 7.4539 -5.3512 -2.3207 21 1 7.5886 -6.4078 -2.5517 22 6 6.6343 -4.5528 -3.3364 23 7 6.7953 -5.1464 -4.6704 24 6 4.1453 -2.3326 0.3893 25 1 -0.4850 -0.8368 0.0746 26 1 2.7983 0.3350 2.0347 27 1 4.8967 0.1136 3.2893 28 1 6.5146 -1.6421 2.7001 29 1 6.7877 -3.8454 1.4722 30 1 8.7787 -3.5857 -1.8801 31 1 9.4975 -5.2112 -1.3869 32 1 5.5820 -4.5761 -3.0529 33 1 6.9831 -3.5203 -3.3537 34 1 6.2629 -4.6369 -5.3596 35 1 7.7693 -5.1955 -4.9293 36 1 3.9379 -3.0165 -0.4205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715117092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:50 Heat of formation + Delta-G solvation = -18.766891 kcal Electronic energy + Delta-G solvation = -18898.527249 eV Core-core repulsion = 15960.662874 eV Total energy + Delta-G solvation = -2937.864375 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57324 -39.56148 -37.86599 -36.22714 -35.12389 -34.38604 -32.02360 -30.47752 -26.95456 -26.50125 -25.45368 -23.02537 -22.59501 -21.88915 -20.82816 -20.19354 -18.22571 -17.80350 -17.09056 -16.58447 -16.52964 -16.16568 -15.83830 -15.43477 -15.24908 -14.65986 -14.58825 -14.19710 -13.95364 -13.81895 -13.51639 -13.24964 -12.95269 -12.57575 -12.32742 -12.18611 -11.89432 -11.54895 -11.39509 -11.28104 -11.16080 -10.73579 -10.55223 -9.67682 -9.65378 -9.45710 -8.86538 -6.56295 0.68733 0.84334 1.34233 1.51952 1.59798 1.74765 2.13886 2.16563 2.48113 2.77221 3.35327 3.50003 3.72716 3.84314 4.02734 4.15991 4.34929 4.38297 4.56008 4.65706 4.71366 4.80527 4.89326 4.94858 4.99307 5.04627 5.10784 5.30626 5.39506 5.61500 5.74774 5.83584 5.88509 6.09602 6.15155 6.42874 6.57691 6.59447 6.66291 6.83172 7.29969 7.80544 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.005583 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.663775 B = 5013.703030 C = 5780.110627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.031 3.969 3 Si 1.095 2.905 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.566 4.566 8 H 0.039 0.961 9 C 0.087 3.913 10 C -0.273 4.273 11 C -0.058 4.058 12 C -0.258 4.258 13 C 0.173 3.827 14 N -0.656 5.656 15 C 0.522 3.478 16 O -0.559 6.559 17 C -0.188 4.188 18 H 0.161 0.839 19 C -0.127 4.127 20 C -0.120 4.120 21 H 0.139 0.861 22 C 0.102 3.898 23 N -0.851 5.851 24 C -0.242 4.242 25 H 0.283 0.717 26 H 0.101 0.899 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.424 0.576 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.014 0.986 34 H 0.345 0.655 35 H 0.349 0.651 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.976 -7.377 0.361 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.188 4.188 3 Si 0.914 3.086 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.084 3.916 10 C -0.293 4.293 11 C -0.076 4.076 12 C -0.279 4.279 13 C 0.079 3.921 14 N -0.302 5.302 15 C 0.311 3.689 16 O -0.437 6.437 17 C -0.209 4.209 18 H 0.178 0.822 19 C -0.164 4.164 20 C -0.139 4.139 21 H 0.157 0.843 22 C -0.029 4.029 23 N -0.382 5.382 24 C -0.264 4.264 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.262 0.738 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.901 -6.099 -0.043 17.967 hybrid contribution -0.287 -1.194 -0.202 1.245 sum 16.614 -7.293 -0.246 18.146 Atomic orbital electron populations 1.70614 1.09136 1.32619 1.30741 1.28310 0.95265 1.06709 0.88531 0.83403 0.74813 0.70762 0.79668 1.16969 1.19378 1.20265 1.20457 1.07513 1.00016 1.31419 0.94285 1.17726 0.91018 0.91669 0.91223 1.21159 1.01262 1.05283 1.01586 1.20865 0.92451 0.96617 0.97696 1.20548 1.02810 1.00451 1.04083 1.17632 0.88123 0.90346 0.95959 1.43395 1.39331 1.38080 1.09389 1.20708 0.82095 0.84172 0.81900 1.90758 1.48511 1.56477 1.47905 1.22339 1.00976 0.99107 0.98481 0.82189 1.23232 0.91683 1.01819 0.99657 1.22399 1.00381 1.01437 0.89703 0.84285 1.21200 0.99164 0.93841 0.88652 1.58755 1.16285 1.59581 1.03575 1.20808 0.95269 1.05684 1.04631 0.90680 0.88090 0.84300 0.84229 0.73795 0.89714 0.83670 0.93299 0.96760 0.84205 0.83799 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.78 13.65 21.82 0.30 -45.49 16 2 C 0.03 1.72 5.11 85.25 0.44 2.15 16 3 Si 1.09 50.41 25.78 68.60 1.77 52.17 16 4 H -0.25 -10.14 6.53 99.48 0.65 -9.49 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.57 -34.22 9.29 23.46 0.22 -34.00 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 9 C 0.09 4.86 5.20 -21.31 -0.11 4.75 16 10 C -0.27 -13.51 7.70 22.75 0.18 -13.33 16 11 C -0.06 -2.36 10.02 22.20 0.22 -2.14 16 12 C -0.26 -9.86 9.97 22.58 0.23 -9.64 16 13 C 0.17 7.41 6.27 38.10 0.24 7.65 16 14 N -0.66 -21.31 5.34 -303.65 -1.62 -22.93 16 15 C 0.52 17.68 7.34 87.66 0.64 18.32 16 16 O -0.56 -24.91 10.78 -3.02 -0.03 -24.94 16 17 C -0.19 -4.05 6.19 -11.54 -0.07 -4.12 16 18 H 0.16 2.32 8.14 -2.38 -0.02 2.30 16 19 C -0.13 -2.12 9.88 30.58 0.30 -1.82 16 20 C -0.12 -2.58 5.95 -10.81 -0.06 -2.64 16 21 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 22 C 0.10 2.94 5.33 86.30 0.46 3.40 16 23 N -0.85 -19.40 9.62 -186.72 -1.80 -21.19 16 24 C -0.24 -12.89 8.39 22.85 0.19 -12.69 16 25 H 0.28 15.88 8.73 -92.70 -0.81 15.07 16 26 H 0.10 4.92 4.95 -2.91 -0.01 4.90 16 27 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 28 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 29 H 0.42 9.51 8.82 -92.71 -0.82 8.69 16 30 H 0.08 1.71 8.03 -2.39 -0.02 1.70 16 31 H 0.15 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.05 1.83 6.92 -2.39 -0.02 1.81 16 33 H 0.01 0.46 7.29 -2.39 -0.02 0.45 16 34 H 0.35 7.53 9.08 -89.70 -0.81 6.71 16 35 H 0.35 6.09 8.99 -89.69 -0.81 5.29 16 36 H 0.08 4.60 6.41 -2.91 -0.02 4.58 16 Total: -1.00 -73.04 300.37 0.08 -72.96 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -1.40 Total: 33.53 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 2.87 Total: -44.11 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -3.12 Total: -89.61 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.03 Total: -24.94 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.77 Total: 52.17 kcal Total: -73.04 0.08 -72.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715117092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.196 kcal (2) G-P(sol) polarization free energy of solvation -73.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds