Wall clock time and date at job start Mon Mar 30 2020 04:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47277 * 274.08574 * 3 2 1 5 5 H 1.09001 * 109.47235 * 305.00866 * 4 3 2 6 6 C 1.52999 * 109.47374 * 185.00201 * 4 3 2 7 7 O 1.42901 * 109.47132 * 305.00451 * 6 4 3 8 8 N 1.46506 * 109.46890 * 65.00447 * 4 3 2 9 9 C 1.39846 * 119.99942 * 205.00343 * 8 4 3 10 10 C 1.39606 * 119.84080 * 359.72038 * 9 8 4 11 11 C 1.38063 * 120.54672 * 179.76291 * 10 9 8 12 12 C 1.38732 * 120.22332 * 0.51575 * 11 10 9 13 13 N 1.38859 * 120.16474 * 179.72026 * 12 11 10 14 14 C 1.41566 * 119.67189 * 359.74451 * 12 11 10 15 15 C 1.41027 * 120.26491 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00548 * 25.57084 * 15 14 12 17 17 C 1.39894 * 120.00008 * 205.56832 * 15 14 12 18 18 N 1.30901 * 119.99714 * 15.35189 * 17 15 14 19 19 Si 1.86788 * 120.00102 * 195.34825 * 17 15 14 20 20 H 1.48497 * 109.47221 * 94.97032 * 19 17 15 21 21 H 1.48505 * 109.47120 * 214.96881 * 19 17 15 22 22 H 1.48504 * 109.47466 * 334.97123 * 19 17 15 23 23 C 1.38008 * 119.84259 * 180.02562 * 9 8 4 24 24 H 4.44649 * 5.63223 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46909 * 154.08982 * 3 2 1 26 26 H 1.08998 * 109.47630 * 34.08898 * 3 2 1 27 27 H 1.09002 * 109.47158 * 184.99971 * 6 4 3 28 28 H 1.09002 * 109.46784 * 65.00574 * 6 4 3 29 29 H 0.96700 * 113.99733 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00056 * 24.99814 * 8 4 3 31 31 H 1.07999 * 119.72546 * 0.02562 * 10 9 8 32 32 H 1.07999 * 119.88386 * 180.26042 * 11 10 9 33 33 H 0.97002 * 120.00019 * 180.02562 * 13 12 11 34 34 H 0.97006 * 120.00010 * 0.02562 * 13 12 11 35 35 H 0.97000 * 120.00074 * 179.97438 * 18 17 15 36 36 H 1.08007 * 120.11224 * 359.95271 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1019 1.4388 5 1 2.7210 0.6991 2.0365 6 6 4.6808 0.0241 1.4496 7 8 5.2458 -0.9535 0.5737 8 7 2.7691 -1.3975 2.0029 9 6 2.6376 -1.5462 3.3872 10 6 2.8814 -0.4594 4.2288 11 6 2.7511 -0.5886 5.5972 12 6 2.3857 -1.8065 6.1521 13 7 2.2607 -1.9365 7.5289 14 6 2.1415 -2.9162 5.3076 15 6 1.7699 -4.1602 5.8583 16 1 1.2775 -4.2002 6.8186 17 6 2.0392 -5.3424 5.1606 18 7 2.8860 -5.3349 4.1624 19 14 1.1903 -6.9317 5.6532 20 1 -0.0183 -7.1283 4.8132 21 1 2.1212 -8.0718 5.4559 22 1 0.7932 -6.8584 7.0823 23 6 2.2734 -2.7682 3.9151 24 1 -1.0500 -0.0002 -0.0001 25 1 3.0089 0.9252 -0.4491 26 1 3.0098 -0.8502 -0.5760 27 1 5.0516 -0.1374 2.4618 28 1 4.9653 1.0211 1.1132 29 1 6.2116 -0.9319 0.5310 30 1 2.6042 -2.1521 1.4162 31 1 3.1702 0.4914 3.8058 32 1 2.9383 0.2603 6.2381 33 1 2.0055 -2.7893 7.9143 34 1 2.4286 -1.1746 8.1053 35 1 3.0730 -6.1547 3.6788 36 1 2.0897 -3.6079 3.2611 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717786007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:04 Heat of formation + Delta-G solvation = 26.079212 kcal Electronic energy + Delta-G solvation = -19010.752274 eV Core-core repulsion = 16074.832572 eV Total energy + Delta-G solvation = -2935.919703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.39952 -37.13567 -35.19664 -33.66303 -33.40166 -31.67123 -29.62395 -29.30014 -26.50690 -25.78717 -24.69275 -21.56250 -20.62808 -19.50902 -18.08331 -17.36183 -16.79272 -16.03850 -15.44944 -15.09206 -14.89555 -14.56863 -14.44893 -13.80112 -13.13598 -13.08113 -12.66027 -12.29408 -11.97841 -11.89276 -11.61342 -11.32858 -11.20062 -11.04299 -10.97833 -10.33107 -10.09795 -9.94681 -9.79936 -9.69142 -9.60799 -9.27006 -9.03008 -7.72023 -7.18600 -6.56886 -5.48329 -4.03334 2.93403 3.09183 3.11599 3.15933 3.18420 3.34006 3.52191 4.06061 4.37576 4.60323 4.61824 4.86256 5.27624 5.45087 5.50170 5.57418 5.61058 5.85903 5.94446 6.04816 6.25994 6.31150 6.39877 6.64481 7.15896 7.18803 7.36189 7.53477 7.73592 7.85413 7.90480 7.91731 8.05299 8.17579 8.49830 8.80276 8.95361 8.98899 9.04659 9.29434 9.37927 10.41186 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.006066 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.679580 B = 4615.159252 C = 5081.870720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.175 4.175 3 C -0.015 4.015 4 C 0.172 3.828 5 H 0.087 0.913 6 C 0.058 3.942 7 O -0.565 6.565 8 N -0.745 5.745 9 C 0.182 3.818 10 C -0.261 4.261 11 C -0.152 4.152 12 C 0.083 3.917 13 N -0.889 5.889 14 C 0.095 3.905 15 C -0.463 4.463 16 H 0.071 0.929 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.200 4.200 24 H 0.213 0.787 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.372 0.628 30 H 0.390 0.610 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.388 0.612 34 H 0.373 0.627 35 H 0.274 0.726 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 7.652 -5.487 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.175 4.175 3 C -0.052 4.052 4 C 0.064 3.936 5 H 0.104 0.896 6 C -0.022 4.022 7 O -0.369 6.369 8 N -0.379 5.379 9 C 0.083 3.917 10 C -0.285 4.285 11 C -0.177 4.177 12 C -0.018 4.018 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.494 4.494 16 H 0.089 0.911 17 C -0.141 4.141 18 N -0.425 5.425 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.224 4.224 24 H 0.230 0.770 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.217 0.783 30 H 0.224 0.776 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.216 0.784 34 H 0.198 0.802 35 H 0.085 0.915 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.973 7.510 -5.824 9.553 hybrid contribution 0.077 -0.882 0.472 1.004 sum 1.050 6.628 -5.352 8.583 Atomic orbital electron populations 1.24772 0.95878 1.01635 1.01129 1.23014 0.94442 0.99977 1.00074 1.18931 0.84788 1.03538 0.97978 1.20629 0.91028 0.89550 0.92402 0.89569 1.22874 0.95476 0.89952 0.93857 1.86486 1.24612 1.58714 1.67136 1.44247 1.79554 1.09917 1.04163 1.17519 0.98084 0.94246 0.81803 1.19594 1.19798 0.96457 0.92651 1.19680 1.09007 0.94840 0.94139 1.17849 1.05569 0.94689 0.83670 1.41804 1.83502 1.13875 1.04026 1.16985 0.92444 0.90960 0.90622 1.19146 1.35190 0.90347 1.04756 0.91143 1.25755 0.93436 1.00510 0.94359 1.69883 1.25752 1.29080 1.17787 0.86409 0.79842 0.81150 0.79825 1.19729 1.20608 1.18943 1.20520 1.12249 0.94798 0.94875 0.77040 0.89310 0.88683 0.92489 0.94208 0.78265 0.77634 0.89886 0.89904 0.78374 0.80170 0.91481 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.17 19.25 29.55 0.57 -2.60 16 2 C -0.18 -2.70 13.06 -37.12 -0.48 -3.18 16 3 C -0.02 -0.21 4.97 -29.52 -0.15 -0.36 16 4 C 0.17 2.73 2.03 -67.93 -0.14 2.59 16 5 H 0.09 1.42 6.48 -51.93 -0.34 1.08 16 6 C 0.06 0.82 6.77 37.16 0.25 1.07 16 7 O -0.57 -7.94 12.83 -35.23 -0.45 -8.39 16 8 N -0.75 -14.79 4.90 -52.17 -0.26 -15.04 16 9 C 0.18 4.29 6.63 -83.78 -0.56 3.74 16 10 C -0.26 -5.92 8.83 -39.14 -0.35 -6.27 16 11 C -0.15 -3.52 9.86 -39.46 -0.39 -3.91 16 12 C 0.08 2.04 6.79 -83.23 -0.56 1.47 16 13 N -0.89 -18.46 8.98 32.75 0.29 -18.16 16 14 C 0.10 2.56 5.58 -106.66 -0.60 1.97 16 15 C -0.46 -12.35 8.50 -37.91 -0.32 -12.67 16 16 H 0.07 1.79 6.67 -52.49 -0.35 1.44 16 17 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 18 N -0.80 -21.27 10.88 55.55 0.60 -20.67 16 19 Si 0.90 19.30 29.59 -169.99 -5.03 14.27 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 24 H 0.21 2.38 7.80 -54.09 -0.42 1.96 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.34 7.73 -51.93 -0.40 0.94 16 27 H 0.06 0.92 7.77 -51.93 -0.40 0.52 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.37 3.59 9.12 45.56 0.42 4.00 16 30 H 0.39 7.90 8.61 -40.82 -0.35 7.55 16 31 H 0.08 1.68 6.15 -52.49 -0.32 1.36 16 32 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.39 7.93 7.04 -40.82 -0.29 7.64 16 34 H 0.37 6.55 8.83 -40.82 -0.36 6.19 16 35 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.12 3.30 6.14 -52.48 -0.32 2.98 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -30.53 309.41 -6.86 -37.39 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -3.54 Total: 27.86 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -3.14 Total: -21.92 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.64 Total: -53.88 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.45 Total: -8.39 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.53 -6.86 -37.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717786007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.472 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds