Wall clock time and date at job start Mon Mar 30 2020 04:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47277 * 274.08574 * 3 2 1 5 5 H 1.09001 * 109.47235 * 305.00866 * 4 3 2 6 6 C 1.52999 * 109.47374 * 185.00201 * 4 3 2 7 7 O 1.42901 * 109.47132 * 305.00451 * 6 4 3 8 8 N 1.46506 * 109.46890 * 65.00447 * 4 3 2 9 9 C 1.39846 * 119.99942 * 205.00343 * 8 4 3 10 10 C 1.39606 * 119.84080 * 359.72038 * 9 8 4 11 11 C 1.38063 * 120.54672 * 179.76291 * 10 9 8 12 12 C 1.38732 * 120.22332 * 0.51575 * 11 10 9 13 13 N 1.38859 * 120.16474 * 179.72026 * 12 11 10 14 14 C 1.41566 * 119.67189 * 359.74451 * 12 11 10 15 15 C 1.41027 * 120.26491 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00548 * 25.57084 * 15 14 12 17 17 C 1.39894 * 120.00008 * 205.56832 * 15 14 12 18 18 N 1.30901 * 119.99714 * 15.35189 * 17 15 14 19 19 Si 1.86788 * 120.00102 * 195.34825 * 17 15 14 20 20 H 1.48497 * 109.47221 * 94.97032 * 19 17 15 21 21 H 1.48505 * 109.47120 * 214.96881 * 19 17 15 22 22 H 1.48504 * 109.47466 * 334.97123 * 19 17 15 23 23 C 1.38008 * 119.84259 * 180.02562 * 9 8 4 24 24 H 4.44649 * 5.63223 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46909 * 154.08982 * 3 2 1 26 26 H 1.08998 * 109.47630 * 34.08898 * 3 2 1 27 27 H 1.09002 * 109.47158 * 184.99971 * 6 4 3 28 28 H 1.09002 * 109.46784 * 65.00574 * 6 4 3 29 29 H 0.96700 * 113.99733 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00056 * 24.99814 * 8 4 3 31 31 H 1.07999 * 119.72546 * 0.02562 * 10 9 8 32 32 H 1.07999 * 119.88386 * 180.26042 * 11 10 9 33 33 H 0.97002 * 120.00019 * 180.02562 * 13 12 11 34 34 H 0.97006 * 120.00010 * 0.02562 * 13 12 11 35 35 H 0.97000 * 120.00074 * 179.97438 * 18 17 15 36 36 H 1.08007 * 120.11224 * 359.95271 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1019 1.4388 5 1 2.7210 0.6991 2.0365 6 6 4.6808 0.0241 1.4496 7 8 5.2458 -0.9535 0.5737 8 7 2.7691 -1.3975 2.0029 9 6 2.6376 -1.5462 3.3872 10 6 2.8814 -0.4594 4.2288 11 6 2.7511 -0.5886 5.5972 12 6 2.3857 -1.8065 6.1521 13 7 2.2607 -1.9365 7.5289 14 6 2.1415 -2.9162 5.3076 15 6 1.7699 -4.1602 5.8583 16 1 1.2775 -4.2002 6.8186 17 6 2.0392 -5.3424 5.1606 18 7 2.8860 -5.3349 4.1624 19 14 1.1903 -6.9317 5.6532 20 1 -0.0183 -7.1283 4.8132 21 1 2.1212 -8.0718 5.4559 22 1 0.7932 -6.8584 7.0823 23 6 2.2734 -2.7682 3.9151 24 1 -1.0500 -0.0002 -0.0001 25 1 3.0089 0.9252 -0.4491 26 1 3.0098 -0.8502 -0.5760 27 1 5.0516 -0.1374 2.4618 28 1 4.9653 1.0211 1.1132 29 1 6.2116 -0.9319 0.5310 30 1 2.6042 -2.1521 1.4162 31 1 3.1702 0.4914 3.8058 32 1 2.9383 0.2603 6.2381 33 1 2.0055 -2.7893 7.9143 34 1 2.4286 -1.1746 8.1053 35 1 3.0730 -6.1547 3.6788 36 1 2.0897 -3.6079 3.2611 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717786007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:04 Heat of formation + Delta-G solvation = 3.820484 kcal Electronic energy + Delta-G solvation = -19011.717485 eV Core-core repulsion = 16074.832572 eV Total energy + Delta-G solvation = -2936.884913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98876 -38.60770 -36.49265 -35.34922 -35.02966 -33.11550 -31.31695 -30.95303 -27.87069 -27.34203 -26.51286 -23.24294 -22.21053 -21.19181 -19.23936 -18.97741 -18.13400 -17.74060 -17.20312 -16.69743 -16.41877 -16.20831 -15.60888 -15.06486 -14.70903 -14.32733 -14.17686 -13.94244 -13.69848 -13.60875 -13.22935 -12.95228 -12.74402 -12.67877 -12.50518 -12.05535 -11.77039 -11.46370 -11.20599 -11.02659 -10.98032 -10.93141 -10.72950 -9.36468 -9.12076 -8.47821 -7.25750 -5.98974 1.13381 1.40202 1.52015 1.52928 1.67998 1.92923 1.97221 2.27059 2.90703 2.96655 3.53921 3.54988 3.79256 3.99598 4.12027 4.34115 4.44223 4.59104 4.64215 4.78337 4.86230 4.89724 5.10386 5.23406 5.25352 5.38122 5.46737 5.69097 5.91870 6.08947 6.19788 6.31822 6.58919 6.77416 6.97327 6.99936 7.09868 7.17935 7.27204 7.49731 7.69138 8.52103 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.006066 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.679580 B = 4615.159252 C = 5081.870720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.205 4.205 3 C -0.007 4.007 4 C 0.165 3.835 5 H 0.084 0.916 6 C 0.065 3.935 7 O -0.582 6.582 8 N -0.744 5.744 9 C 0.180 3.820 10 C -0.259 4.259 11 C -0.157 4.157 12 C 0.067 3.933 13 N -0.879 5.879 14 C 0.059 3.941 15 C -0.491 4.491 16 H 0.073 0.927 17 C 0.031 3.969 18 N -0.833 5.833 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.227 4.227 24 H 0.237 0.763 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.391 0.609 30 H 0.384 0.616 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.389 0.611 34 H 0.390 0.610 35 H 0.278 0.722 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 8.922 -5.658 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.206 4.206 3 C -0.044 4.044 4 C 0.059 3.941 5 H 0.102 0.898 6 C -0.014 4.014 7 O -0.389 6.389 8 N -0.376 5.376 9 C 0.079 3.921 10 C -0.283 4.283 11 C -0.181 4.181 12 C -0.035 4.035 13 N -0.423 5.423 14 C 0.054 3.946 15 C -0.522 4.522 16 H 0.092 0.908 17 C -0.182 4.182 18 N -0.461 5.461 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.180 1.180 23 C -0.252 4.252 24 H 0.253 0.747 25 H 0.140 0.860 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.240 0.760 30 H 0.217 0.783 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.217 0.783 34 H 0.218 0.782 35 H 0.088 0.912 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.142 8.822 -5.995 10.727 hybrid contribution 0.062 -1.148 0.456 1.237 sum 1.204 7.675 -5.538 9.541 Atomic orbital electron populations 1.25571 0.96952 1.01068 1.00281 1.23585 0.95460 1.00635 1.00870 1.18928 0.84003 1.04970 0.96479 1.20894 0.92569 0.87216 0.93418 0.89815 1.22730 0.93820 0.91946 0.92934 1.86440 1.26570 1.59077 1.66844 1.44359 1.79102 1.11397 1.02720 1.17611 0.97179 0.93575 0.83692 1.19927 1.18569 0.97151 0.92642 1.20056 1.08035 0.95211 0.94816 1.18023 1.05799 0.94668 0.84986 1.41673 1.83048 1.14675 1.02953 1.17372 0.93642 0.92197 0.91388 1.19399 1.36283 0.91148 1.05408 0.90849 1.26581 0.93664 1.03705 0.94211 1.69980 1.27032 1.30058 1.18986 0.85308 0.78485 0.76834 0.79690 1.19633 1.19967 1.18038 1.20474 1.14461 0.95378 0.94917 0.74678 0.86048 0.89115 0.94837 0.90128 0.76030 0.78326 0.87183 0.87058 0.78308 0.78213 0.91220 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.20 19.25 74.32 1.43 -4.77 16 2 C -0.21 -6.07 13.06 31.12 0.41 -5.67 16 3 C -0.01 -0.18 4.97 28.79 0.14 -0.04 16 4 C 0.17 4.98 2.03 44.99 0.09 5.07 16 5 H 0.08 2.57 6.48 -2.39 -0.02 2.55 16 6 C 0.07 1.69 6.77 71.98 0.49 2.17 16 7 O -0.58 -15.27 12.83 -148.98 -1.91 -17.18 16 8 N -0.74 -29.54 4.90 -318.96 -1.56 -31.10 16 9 C 0.18 8.56 6.63 38.14 0.25 8.82 16 10 C -0.26 -11.46 8.83 22.56 0.20 -11.26 16 11 C -0.16 -7.04 9.86 22.35 0.22 -6.82 16 12 C 0.07 3.29 6.79 38.97 0.26 3.56 16 13 N -0.88 -35.91 8.98 -50.31 -0.45 -36.36 16 14 C 0.06 3.27 5.58 -21.18 -0.12 3.16 16 15 C -0.49 -26.87 8.50 23.36 0.20 -26.68 16 16 H 0.07 3.80 6.67 -2.91 -0.02 3.78 16 17 C 0.03 1.62 5.18 85.23 0.44 2.06 16 18 N -0.83 -45.97 10.88 21.82 0.24 -45.73 16 19 Si 0.97 40.30 29.59 68.60 2.03 42.33 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 C -0.23 -12.50 8.50 22.81 0.19 -12.31 16 24 H 0.24 4.91 7.80 -4.42 -0.03 4.87 16 25 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.09 2.43 7.73 -2.39 -0.02 2.41 16 27 H 0.03 1.03 7.77 -2.39 -0.02 1.01 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.39 6.74 9.12 -74.06 -0.68 6.07 16 30 H 0.38 15.94 8.61 -92.71 -0.80 15.14 16 31 H 0.11 4.20 6.15 -2.91 -0.02 4.18 16 32 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.39 15.81 7.04 -92.71 -0.65 15.16 16 34 H 0.39 13.08 8.83 -92.70 -0.82 12.26 16 35 H 0.28 14.13 8.30 -92.71 -0.77 13.36 16 36 H 0.09 5.52 6.14 -2.91 -0.02 5.50 16 Total: -1.00 -67.28 309.41 0.76 -66.52 By element: Atomic # 1 Polarization: 66.02 SS G_CDS: -1.80 Total: 64.22 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 4.21 Total: -42.69 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -1.78 Total: -113.20 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.91 Total: -17.18 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -67.28 0.76 -66.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717786007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.341 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds