Wall clock time and date at job start Mon Mar 30 2020 04:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47472 * 91.38864 * 3 2 1 5 5 H 1.08996 * 109.46919 * 54.99299 * 4 3 2 6 6 O 1.42893 * 109.46782 * 294.99633 * 4 3 2 7 7 C 1.52994 * 109.47351 * 174.99756 * 4 3 2 8 8 N 1.46497 * 109.47299 * 185.00145 * 7 4 3 9 9 C 1.39858 * 120.00272 * 180.02562 * 8 7 4 10 10 C 1.39602 * 119.83801 * 359.71718 * 9 8 7 11 11 C 1.38060 * 120.54580 * 179.76329 * 10 9 8 12 12 C 1.38724 * 120.22257 * 0.51512 * 11 10 9 13 13 N 1.38867 * 120.16492 * 179.72106 * 12 11 10 14 14 C 1.41562 * 119.67445 * 359.74869 * 12 11 10 15 15 C 1.41033 * 120.27039 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99953 * 25.57034 * 15 14 12 17 17 C 1.39892 * 120.00089 * 205.57080 * 15 14 12 18 18 N 1.30896 * 119.99743 * 15.34161 * 17 15 14 19 19 Si 1.86797 * 119.99920 * 195.34644 * 17 15 14 20 20 H 1.48495 * 109.47277 * 59.99421 * 19 17 15 21 21 H 1.48502 * 109.46964 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46718 * 299.99682 * 19 17 15 23 23 C 1.38002 * 119.84091 * 179.97438 * 9 8 7 24 24 H 4.44655 * 5.63363 * 180.02562 * 4 1 2 25 25 H 1.09011 * 109.46909 * 211.38666 * 3 2 1 26 26 H 1.08998 * 109.47715 * 331.37952 * 3 2 1 27 27 H 0.96699 * 114.00394 * 299.99749 * 6 4 3 28 28 H 1.09004 * 109.47441 * 304.99878 * 7 4 3 29 29 H 1.09000 * 109.47389 * 64.99409 * 7 4 3 30 30 H 0.97002 * 119.99601 * 359.97438 * 8 7 4 31 31 H 1.08006 * 119.72489 * 0.02562 * 10 9 8 32 32 H 1.08004 * 119.88223 * 180.26214 * 11 10 9 33 33 H 0.96997 * 119.99937 * 180.02562 * 13 12 11 34 34 H 0.96995 * 119.99746 * 0.02562 * 13 12 11 35 35 H 0.97005 * 119.99693 * 179.97438 * 18 17 15 36 36 H 1.08010 * 120.11315 * 359.94673 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1560 0.0358 -1.4421 5 1 2.7210 0.8902 -1.9605 6 8 2.7786 -1.1695 -2.1102 7 6 4.6807 0.1623 -1.4408 8 7 5.1591 0.3160 -2.8169 9 6 6.5280 0.4501 -3.0705 10 6 7.4350 0.4430 -2.0093 11 6 8.7897 0.5694 -2.2434 12 6 9.2639 0.7160 -3.5388 13 7 10.6263 0.8489 -3.7723 14 6 8.3520 0.7300 -4.6215 15 6 8.8203 0.8788 -5.9435 16 1 9.8257 0.5772 -6.1974 17 6 7.9824 1.4172 -6.9259 18 7 6.8925 2.0539 -6.5793 19 14 8.4189 1.2273 -8.7322 20 1 8.4923 -0.2158 -9.0746 21 1 7.3777 1.8818 -9.5645 22 1 9.7341 1.8655 -8.9933 23 6 6.9750 0.5942 -4.3682 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.8782 0.5353 26 1 3.0098 -0.9012 0.4922 27 1 3.1312 -1.9723 -1.7024 28 1 4.9726 1.0341 -0.8552 29 1 5.1193 -0.7337 -1.0015 30 1 4.5265 0.3240 -3.5522 31 1 7.0742 0.3334 -0.9972 32 1 9.4823 0.5583 -1.4147 33 1 10.9552 0.9516 -4.6790 34 1 11.2490 0.8390 -3.0287 35 1 6.3117 2.4276 -7.2605 36 1 6.2700 0.6026 -5.1864 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717926088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:55 Heat of formation + Delta-G solvation = 21.215866 kcal Electronic energy + Delta-G solvation = -18442.045259 eV Core-core repulsion = 15505.914666 eV Total energy + Delta-G solvation = -2936.130593 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.48283 -37.57569 -34.88695 -33.78876 -33.44234 -31.90338 -30.11403 -29.38277 -27.26237 -25.04057 -24.46863 -22.10430 -20.83053 -19.70606 -18.40055 -17.03355 -16.59106 -16.06088 -15.76323 -15.43394 -15.09125 -14.66530 -14.35915 -13.76053 -13.58672 -13.26028 -12.61483 -12.53729 -12.32054 -11.89903 -11.68547 -11.38196 -11.21686 -11.08119 -10.98199 -10.60547 -10.36070 -10.27152 -10.01045 -9.75295 -9.68953 -9.32459 -9.03776 -7.76194 -7.20954 -6.59000 -5.52874 -4.05480 2.70854 2.76020 2.93756 3.14198 3.16777 3.32632 3.49161 4.04830 4.09247 4.40122 4.52694 4.83396 4.96545 5.10949 5.14339 5.43631 5.50009 5.56377 5.88821 5.90446 5.96227 6.17875 6.36734 6.62182 7.12495 7.15934 7.33494 7.50373 7.54200 7.63623 7.71340 7.88859 8.02141 8.13723 8.46883 8.76736 8.91491 8.95505 9.01738 9.27060 9.35192 10.39305 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.004576 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.535086 B = 6117.519457 C = 7143.623505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C -0.043 4.043 4 C 0.102 3.898 5 H 0.105 0.895 6 O -0.553 6.553 7 C 0.110 3.890 8 N -0.757 5.757 9 C 0.177 3.823 10 C -0.258 4.258 11 C -0.153 4.153 12 C 0.084 3.916 13 N -0.889 5.889 14 C 0.095 3.905 15 C -0.464 4.464 16 H 0.070 0.930 17 C 0.076 3.924 18 N -0.800 5.800 19 Si 0.903 3.097 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.200 4.200 24 H 0.215 0.785 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.374 0.626 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.392 0.608 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.388 0.612 34 H 0.374 0.626 35 H 0.275 0.725 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 -3.123 8.776 11.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.177 4.177 3 C -0.081 4.081 4 C 0.043 3.957 5 H 0.123 0.877 6 O -0.358 6.358 7 C -0.016 4.016 8 N -0.393 5.393 9 C 0.078 3.922 10 C -0.281 4.281 11 C -0.178 4.178 12 C -0.016 4.016 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.495 4.495 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.427 5.427 19 Si 0.728 3.272 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.225 4.225 24 H 0.232 0.768 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.221 0.779 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.226 0.774 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.217 0.783 34 H 0.199 0.801 35 H 0.086 0.914 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.802 -2.581 8.467 11.163 hybrid contribution 0.372 -0.237 -0.654 0.789 sum -6.430 -2.818 7.813 10.503 Atomic orbital electron populations 1.24833 0.95914 1.01379 1.00860 1.22848 0.94281 1.00217 1.00316 1.19431 0.85668 1.04310 0.98662 1.22135 0.93793 0.88887 0.90929 0.87746 1.86615 1.76667 1.15652 1.56912 1.21650 0.92161 1.00700 0.87106 1.44183 1.04909 1.85337 1.04892 1.17521 0.81932 0.98778 0.93935 1.19586 0.92387 1.20921 0.95255 1.19689 0.94503 1.10013 0.93554 1.17860 0.84270 1.06526 0.92981 1.41810 1.04240 1.88015 1.09125 1.16973 0.90488 0.92250 0.91286 1.19108 0.99589 1.37650 0.93164 0.91157 1.25750 0.94470 0.92969 1.00797 1.69864 1.11644 1.25838 1.35309 0.86472 0.78867 0.79398 0.82456 1.19148 1.20596 1.19384 1.20533 0.96083 1.12738 0.93133 0.76783 0.88298 0.89049 0.77885 0.92599 0.93170 0.77417 0.89850 0.89823 0.78348 0.80129 0.91375 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.28 19.25 29.55 0.57 -1.71 16 2 C -0.18 -2.06 13.10 -37.13 -0.49 -2.55 16 3 C -0.04 -0.43 5.39 -29.52 -0.16 -0.59 16 4 C 0.10 1.25 2.97 -26.73 -0.08 1.17 16 5 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 6 O -0.55 -7.33 13.02 -35.23 -0.46 -7.78 16 7 C 0.11 1.60 4.54 -4.05 -0.02 1.58 16 8 N -0.76 -14.52 5.68 -58.64 -0.33 -14.86 16 9 C 0.18 4.12 6.64 -83.77 -0.56 3.57 16 10 C -0.26 -5.81 9.31 -39.14 -0.36 -6.17 16 11 C -0.15 -3.51 9.86 -39.47 -0.39 -3.90 16 12 C 0.08 2.06 6.79 -83.23 -0.56 1.49 16 13 N -0.89 -18.30 8.98 32.75 0.29 -18.01 16 14 C 0.10 2.55 5.58 -106.65 -0.60 1.95 16 15 C -0.46 -12.27 8.50 -37.90 -0.32 -12.59 16 16 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 17 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 18 N -0.80 -21.12 10.88 55.55 0.60 -20.52 16 19 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.20 -5.26 8.50 -38.75 -0.33 -5.59 16 24 H 0.22 1.54 7.80 -54.09 -0.42 1.12 16 25 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.37 3.72 9.05 45.56 0.41 4.13 16 28 H 0.06 0.81 7.93 -51.93 -0.41 0.40 16 29 H 0.05 0.70 7.95 -51.93 -0.41 0.29 16 30 H 0.39 7.56 8.48 -40.82 -0.35 7.21 16 31 H 0.08 1.67 6.69 -52.48 -0.35 1.32 16 32 H 0.08 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.39 7.85 7.04 -40.82 -0.29 7.56 16 34 H 0.37 6.49 8.83 -40.82 -0.36 6.13 16 35 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 36 H 0.12 3.27 6.14 -52.48 -0.32 2.95 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -30.51 312.46 -7.28 -37.79 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -3.68 Total: 26.07 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.39 Total: -21.48 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.57 Total: -53.38 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.46 Total: -7.78 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.51 -7.28 -37.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717926088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.003 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds