Wall clock time and date at job start Mon Mar 30 2020 04:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47472 * 91.38864 * 3 2 1 5 5 H 1.08996 * 109.46919 * 54.99299 * 4 3 2 6 6 O 1.42893 * 109.46782 * 294.99633 * 4 3 2 7 7 C 1.52994 * 109.47351 * 174.99756 * 4 3 2 8 8 N 1.46497 * 109.47299 * 185.00145 * 7 4 3 9 9 C 1.39858 * 120.00272 * 180.02562 * 8 7 4 10 10 C 1.39602 * 119.83801 * 359.71718 * 9 8 7 11 11 C 1.38060 * 120.54580 * 179.76329 * 10 9 8 12 12 C 1.38724 * 120.22257 * 0.51512 * 11 10 9 13 13 N 1.38867 * 120.16492 * 179.72106 * 12 11 10 14 14 C 1.41562 * 119.67445 * 359.74869 * 12 11 10 15 15 C 1.41033 * 120.27039 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99953 * 25.57034 * 15 14 12 17 17 C 1.39892 * 120.00089 * 205.57080 * 15 14 12 18 18 N 1.30896 * 119.99743 * 15.34161 * 17 15 14 19 19 Si 1.86797 * 119.99920 * 195.34644 * 17 15 14 20 20 H 1.48495 * 109.47277 * 59.99421 * 19 17 15 21 21 H 1.48502 * 109.46964 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46718 * 299.99682 * 19 17 15 23 23 C 1.38002 * 119.84091 * 179.97438 * 9 8 7 24 24 H 4.44655 * 5.63363 * 180.02562 * 4 1 2 25 25 H 1.09011 * 109.46909 * 211.38666 * 3 2 1 26 26 H 1.08998 * 109.47715 * 331.37952 * 3 2 1 27 27 H 0.96699 * 114.00394 * 299.99749 * 6 4 3 28 28 H 1.09004 * 109.47441 * 304.99878 * 7 4 3 29 29 H 1.09000 * 109.47389 * 64.99409 * 7 4 3 30 30 H 0.97002 * 119.99601 * 359.97438 * 8 7 4 31 31 H 1.08006 * 119.72489 * 0.02562 * 10 9 8 32 32 H 1.08004 * 119.88223 * 180.26214 * 11 10 9 33 33 H 0.96997 * 119.99937 * 180.02562 * 13 12 11 34 34 H 0.96995 * 119.99746 * 0.02562 * 13 12 11 35 35 H 0.97005 * 119.99693 * 179.97438 * 18 17 15 36 36 H 1.08010 * 120.11315 * 359.94673 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1560 0.0358 -1.4421 5 1 2.7210 0.8902 -1.9605 6 8 2.7786 -1.1695 -2.1102 7 6 4.6807 0.1623 -1.4408 8 7 5.1591 0.3160 -2.8169 9 6 6.5280 0.4501 -3.0705 10 6 7.4350 0.4430 -2.0093 11 6 8.7897 0.5694 -2.2434 12 6 9.2639 0.7160 -3.5388 13 7 10.6263 0.8489 -3.7723 14 6 8.3520 0.7300 -4.6215 15 6 8.8203 0.8788 -5.9435 16 1 9.8257 0.5772 -6.1974 17 6 7.9824 1.4172 -6.9259 18 7 6.8925 2.0539 -6.5793 19 14 8.4189 1.2273 -8.7322 20 1 8.4923 -0.2158 -9.0746 21 1 7.3777 1.8818 -9.5645 22 1 9.7341 1.8655 -8.9933 23 6 6.9750 0.5942 -4.3682 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.8782 0.5353 26 1 3.0098 -0.9012 0.4922 27 1 3.1312 -1.9723 -1.7024 28 1 4.9726 1.0341 -0.8552 29 1 5.1193 -0.7337 -1.0015 30 1 4.5265 0.3240 -3.5522 31 1 7.0742 0.3334 -0.9972 32 1 9.4823 0.5583 -1.4147 33 1 10.9552 0.9516 -4.6790 34 1 11.2490 0.8390 -3.0287 35 1 6.3117 2.4276 -7.2605 36 1 6.2700 0.6026 -5.1864 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717926088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:54 Heat of formation + Delta-G solvation = -0.953187 kcal Electronic energy + Delta-G solvation = -18443.006581 eV Core-core repulsion = 15505.914666 eV Total energy + Delta-G solvation = -2937.091915 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.89898 -38.99739 -36.44427 -35.31163 -34.64098 -33.42328 -31.30925 -31.18575 -28.72129 -26.78896 -25.95661 -23.46121 -22.40589 -21.45468 -19.34735 -18.77143 -17.98653 -17.28102 -17.16515 -16.90525 -16.67459 -16.34559 -15.60629 -15.04952 -14.65071 -14.53168 -14.23455 -14.01014 -13.71305 -13.63473 -13.31582 -13.09530 -12.82196 -12.68344 -12.24920 -12.07088 -11.80948 -11.56031 -11.39359 -11.15098 -11.05751 -10.91956 -10.72746 -9.38362 -9.12033 -8.47971 -7.27786 -5.99200 1.14964 1.41262 1.50669 1.54176 1.67704 1.85612 1.94242 2.27819 2.90328 2.95900 3.45628 3.57172 3.79342 3.97105 3.99581 4.12993 4.19538 4.62439 4.64520 4.75436 4.80055 4.88774 5.14552 5.17663 5.24988 5.37110 5.45237 5.68529 5.90803 6.08775 6.19362 6.30453 6.58422 6.73725 6.80218 6.98831 7.08673 7.15865 7.26909 7.49011 7.69014 8.52048 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.004576 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.535086 B = 6117.519457 C = 7143.623505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.211 4.211 3 C -0.036 4.036 4 C 0.114 3.886 5 H 0.089 0.911 6 O -0.572 6.572 7 C 0.109 3.891 8 N -0.757 5.757 9 C 0.172 3.828 10 C -0.256 4.256 11 C -0.158 4.158 12 C 0.068 3.932 13 N -0.880 5.880 14 C 0.059 3.941 15 C -0.493 4.493 16 H 0.074 0.926 17 C 0.032 3.968 18 N -0.834 5.834 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.228 4.228 24 H 0.241 0.759 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.388 0.612 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.388 0.612 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.389 0.611 34 H 0.391 0.609 35 H 0.278 0.722 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 -3.551 10.074 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.211 4.211 3 C -0.073 4.073 4 C 0.055 3.945 5 H 0.107 0.893 6 O -0.379 6.379 7 C -0.016 4.016 8 N -0.391 5.391 9 C 0.072 3.928 10 C -0.280 4.280 11 C -0.182 4.182 12 C -0.034 4.034 13 N -0.424 5.424 14 C 0.054 3.946 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.462 5.462 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.253 4.253 24 H 0.257 0.743 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.237 0.763 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.221 0.779 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.217 0.783 34 H 0.218 0.782 35 H 0.088 0.912 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.800 -3.020 9.811 12.313 hybrid contribution 0.306 -0.133 -0.922 0.981 sum -6.494 -3.153 8.889 11.451 Atomic orbital electron populations 1.25660 0.96980 1.00627 0.99735 1.23389 0.95288 1.01066 1.01341 1.19399 0.84985 1.06051 0.96891 1.21943 0.92009 0.88191 0.92384 0.89327 1.86584 1.76940 1.16570 1.57844 1.21874 0.93733 1.01476 0.84489 1.44306 1.03361 1.84552 1.06898 1.17637 0.83973 0.97951 0.93239 1.19944 0.92255 1.19531 0.96297 1.20074 0.95350 1.08959 0.93840 1.18046 0.85444 1.06768 0.93119 1.41688 1.03284 1.87488 1.09912 1.17362 0.91377 0.93437 0.92416 1.19384 1.00228 1.38804 0.94015 0.90792 1.26571 0.94222 0.92232 1.05014 1.69961 1.12746 1.26814 1.36673 0.85376 0.78879 0.79212 0.76877 1.19032 1.20052 1.18425 1.20507 0.95970 1.14901 0.93916 0.74256 0.86849 0.86987 0.76282 0.91891 0.91807 0.77921 0.86910 0.86947 0.78277 0.78180 0.91152 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.18 19.25 74.32 1.43 -2.75 16 2 C -0.21 -4.55 13.10 31.12 0.41 -4.14 16 3 C -0.04 -0.64 5.39 28.79 0.16 -0.48 16 4 C 0.11 2.65 2.97 30.59 0.09 2.74 16 5 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 6 O -0.57 -14.51 13.02 -148.98 -1.94 -16.45 16 7 C 0.11 2.97 4.54 86.38 0.39 3.36 16 8 N -0.76 -28.82 5.68 -339.44 -1.93 -30.75 16 9 C 0.17 8.05 6.64 38.13 0.25 8.30 16 10 C -0.26 -11.11 9.31 22.56 0.21 -10.90 16 11 C -0.16 -6.97 9.86 22.34 0.22 -6.75 16 12 C 0.07 3.30 6.79 38.96 0.26 3.57 16 13 N -0.88 -35.49 8.98 -50.31 -0.45 -35.94 16 14 C 0.06 3.24 5.58 -21.18 -0.12 3.12 16 15 C -0.49 -26.73 8.50 23.36 0.20 -26.53 16 16 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 17 C 0.03 1.67 5.18 85.23 0.44 2.11 16 18 N -0.83 -45.59 10.88 21.82 0.24 -45.35 16 19 Si 0.97 39.85 29.59 68.60 2.03 41.88 16 20 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.23 -12.35 8.50 22.81 0.19 -12.16 16 24 H 0.24 2.91 7.80 -4.42 -0.03 2.87 16 25 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.39 7.08 9.05 -74.06 -0.67 6.41 16 28 H 0.06 1.66 7.93 -2.39 -0.02 1.64 16 29 H 0.06 1.60 7.95 -2.39 -0.02 1.58 16 30 H 0.39 15.26 8.48 -92.71 -0.79 14.48 16 31 H 0.11 4.15 6.69 -2.91 -0.02 4.13 16 32 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.39 15.61 7.04 -92.71 -0.65 14.96 16 34 H 0.39 12.90 8.83 -92.71 -0.82 12.08 16 35 H 0.28 14.05 8.30 -92.70 -0.77 13.28 16 36 H 0.10 5.52 6.14 -2.91 -0.02 5.50 16 Total: -1.00 -66.72 312.46 0.30 -66.42 By element: Atomic # 1 Polarization: 62.49 SS G_CDS: -1.79 Total: 60.70 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 4.14 Total: -40.51 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -2.14 Total: -112.04 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.94 Total: -16.45 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -66.72 0.30 -66.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717926088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.464 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds