Wall clock time and date at job start Mon Mar 30 2020 04:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86802 * 120.00030 * 2 1 4 4 H 1.48502 * 109.47118 * 273.26752 * 3 2 1 5 5 H 1.48500 * 109.46895 * 33.26737 * 3 2 1 6 6 H 1.48496 * 109.46808 * 153.26662 * 3 2 1 7 7 C 1.39888 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00111 * 345.94383 * 7 2 1 9 9 C 1.41020 * 120.00234 * 165.94965 * 7 2 1 10 10 C 1.40673 * 120.26658 * 329.09055 * 9 7 2 11 11 C 1.38004 * 119.77019 * 179.74572 * 10 9 7 12 12 N 1.39857 * 119.83870 * 180.29871 * 11 10 9 13 13 C 1.48330 * 111.00042 * 33.26971 * 12 11 10 14 14 C 1.55937 * 105.02711 * 121.58104 * 13 12 11 15 15 H 1.09005 * 116.47431 * 159.87512 * 14 13 12 16 16 C 1.59095 * 98.89688 * 34.47099 * 14 13 12 17 17 C 1.49797 * 110.99946 * 150.47685 * 12 11 10 18 18 H 1.09005 * 116.41212 * 74.96526 * 17 12 11 19 19 C 1.56105 * 103.75361 * 305.51800 * 17 12 11 20 20 O 1.44107 * 105.40284 * 288.52596 * 19 17 12 21 21 C 1.39603 * 120.32031 * 0.55343 * 11 10 9 22 22 C 1.38061 * 120.54849 * 359.44228 * 21 11 10 23 23 C 1.38729 * 120.21816 * 0.27908 * 22 21 11 24 24 N 1.38865 * 120.16040 * 180.02562 * 23 22 21 25 25 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.11232 * 0.02726 * 10 9 7 27 27 H 1.09001 * 110.34017 * 241.80001 * 13 12 11 28 28 H 1.09004 * 110.34245 * 4.04589 * 13 12 11 29 29 H 1.08991 * 112.15903 * 190.42897 * 16 14 13 30 30 H 1.09001 * 113.41821 * 62.18635 * 16 14 13 31 31 H 1.09006 * 110.25551 * 47.50408 * 19 17 12 32 32 H 1.08998 * 110.26092 * 169.44806 * 19 17 12 33 33 H 1.07998 * 119.72454 * 179.72016 * 21 11 10 34 34 H 1.08000 * 119.88744 * 180.29579 * 22 21 11 35 35 H 0.97000 * 120.00392 * 354.67450 * 24 23 22 36 36 H 0.97001 * 120.00407 * 174.67377 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4215 2.0863 -1.3978 5 1 1.4768 2.6317 0.7680 6 1 3.5734 1.4211 0.6298 7 6 2.0085 -1.2115 -0.0005 8 1 1.4928 -2.1329 0.2262 9 6 3.3871 -1.2297 -0.2970 10 6 3.9355 -0.2796 -1.1777 11 6 5.2869 -0.3036 -1.4565 12 7 5.8347 0.6442 -2.3269 13 6 5.1254 1.9420 -2.2143 14 6 6.2269 2.9715 -1.8161 15 1 6.0031 4.0210 -2.0074 16 6 7.4476 2.3515 -2.6264 17 6 7.2627 0.9319 -1.9775 18 1 7.9916 0.1684 -2.2493 19 6 7.2022 1.3338 -0.4703 20 8 6.5799 2.6333 -0.4454 21 6 6.1088 -1.2725 -0.8781 22 6 5.5845 -2.2112 -0.0120 23 6 4.2302 -2.2044 0.2886 24 7 3.7043 -3.1488 1.1603 25 1 -0.4850 0.8400 0.0004 26 1 3.3020 0.4688 -1.6304 27 1 4.6605 2.2035 -3.1649 28 1 4.3754 1.8967 -1.4247 29 1 8.3974 2.8125 -2.3554 30 1 7.2905 2.3400 -3.7049 31 1 6.6003 0.6164 0.0877 32 1 8.2078 1.3872 -0.0532 33 1 7.1642 -1.2851 -1.1066 34 1 6.2310 -2.9530 0.4331 35 1 4.2673 -3.8618 1.5003 36 1 2.7738 -3.0955 1.4294 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718286092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:59 Heat of formation + Delta-G solvation = 25.048861 kcal Electronic energy + Delta-G solvation = -20357.188959 eV Core-core repulsion = 17421.224577 eV Total energy + Delta-G solvation = -2935.964382 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13199 -37.95384 -35.12294 -33.50265 -32.67802 -30.88980 -29.96959 -29.42032 -26.19351 -25.01374 -24.48285 -22.07388 -20.96616 -20.48058 -18.90203 -17.57971 -16.93774 -16.30084 -15.99483 -15.51179 -15.19041 -14.76080 -14.24156 -13.56983 -13.18704 -12.84849 -12.67230 -12.50150 -12.24055 -12.08330 -11.83882 -11.52256 -11.43628 -11.37376 -11.08544 -10.97652 -10.72547 -10.47006 -9.85751 -9.81430 -9.61432 -9.14901 -9.05872 -8.14978 -7.61045 -6.84373 -6.17150 -4.29423 2.62128 2.73922 3.10734 3.24473 3.37862 3.87861 4.03484 4.29361 4.40526 4.63763 4.67655 4.98406 5.05150 5.12911 5.44752 5.48070 5.65339 5.74432 5.80818 5.86027 5.94530 6.14943 6.19579 6.24615 6.26481 6.44903 6.58864 6.82315 6.94875 7.11977 7.23854 7.30960 7.46120 7.76470 7.91591 8.13446 8.34074 8.47269 8.78614 8.92664 8.99413 10.18146 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.010073 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.385416 B = 2779.093491 C = 3719.893246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.296 1.296 6 H -0.242 1.242 7 C -0.449 4.449 8 H 0.088 0.912 9 C 0.065 3.935 10 C -0.235 4.235 11 C 0.086 3.914 12 N -0.463 5.463 13 C -0.005 4.005 14 C 0.047 3.953 15 H 0.137 0.863 16 C -0.156 4.156 17 C 0.035 3.965 18 H 0.129 0.871 19 C 0.008 3.992 20 O -0.377 6.377 21 C -0.216 4.216 22 C -0.160 4.160 23 C 0.123 3.877 24 N -0.882 5.882 25 H 0.282 0.718 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.379 0.621 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.218 3.574 -2.207 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.165 1.165 7 C -0.479 4.479 8 H 0.106 0.894 9 C 0.059 3.941 10 C -0.258 4.258 11 C -0.011 4.011 12 N -0.180 5.180 13 C -0.132 4.132 14 C -0.011 4.011 15 H 0.154 0.846 16 C -0.194 4.194 17 C -0.072 4.072 18 H 0.147 0.853 19 C -0.069 4.069 20 O -0.296 6.296 21 C -0.238 4.238 22 C -0.185 4.185 23 C 0.021 3.979 24 N -0.423 5.423 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.204 0.796 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 10.864 3.659 -2.599 11.755 hybrid contribution 0.120 0.542 0.697 0.891 sum 10.984 4.201 -1.902 11.913 Atomic orbital electron populations 1.69695 1.07812 1.29841 1.37376 1.26057 0.94741 1.01358 0.91249 0.86509 0.81053 0.80120 0.78699 1.19641 1.22360 1.16543 1.19102 0.91616 0.95390 1.41748 0.89381 1.17242 0.93011 0.91950 0.91904 1.20498 0.93341 1.05975 1.05987 1.18459 0.93416 0.94883 0.94352 1.62347 1.01457 1.06613 1.47535 1.24349 0.97306 0.88758 1.02767 1.25350 0.94538 0.99050 0.82150 0.84600 1.24627 0.98673 0.95180 1.00878 1.24985 0.91940 0.96929 0.93307 0.85340 1.24520 0.98608 0.85854 0.97908 1.89037 1.79697 1.34894 1.25960 1.19914 0.97173 1.00746 1.05949 1.19893 0.93006 1.01666 1.03947 1.17864 0.91421 0.94246 0.94391 1.41953 1.14398 1.31688 1.54247 0.90751 0.87722 0.89611 0.89960 0.89872 0.88789 0.88280 0.91593 0.88608 0.88709 0.79554 0.77581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.32 13.93 55.55 0.77 -21.55 16 2 C 0.08 2.21 5.45 -17.33 -0.09 2.11 16 3 Si 0.91 21.72 22.53 -169.99 -3.83 17.89 16 4 H -0.27 -6.17 6.10 56.52 0.34 -5.82 16 5 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.24 -6.07 6.73 56.52 0.38 -5.69 16 7 C -0.45 -12.03 8.88 -37.91 -0.34 -12.37 16 8 H 0.09 2.42 7.13 -52.49 -0.37 2.05 16 9 C 0.06 1.64 5.13 -106.66 -0.55 1.09 16 10 C -0.24 -5.79 5.92 -38.75 -0.23 -6.02 16 11 C 0.09 1.90 4.52 -83.77 -0.38 1.52 16 12 N -0.46 -8.88 5.42 -154.06 -0.83 -9.72 16 13 C -0.01 -0.10 5.60 -1.46 -0.01 -0.10 16 14 C 0.05 0.72 5.98 -21.77 -0.13 0.59 16 15 H 0.14 1.67 8.14 -51.93 -0.42 1.25 16 16 C -0.16 -2.01 7.00 -21.06 -0.15 -2.16 16 17 C 0.04 0.55 4.21 -62.16 -0.26 0.28 16 18 H 0.13 1.74 7.46 -51.93 -0.39 1.35 16 19 C 0.01 0.14 6.51 38.82 0.25 0.40 16 20 O -0.38 -6.95 11.27 -35.23 -0.40 -7.35 16 21 C -0.22 -4.42 7.32 -39.14 -0.29 -4.71 16 22 C -0.16 -3.33 9.87 -39.46 -0.39 -3.72 16 23 C 0.12 2.79 6.79 -83.23 -0.56 2.22 16 24 N -0.88 -16.99 8.97 32.75 0.29 -16.69 16 25 H 0.28 7.04 8.30 -40.82 -0.34 6.71 16 26 H 0.11 2.64 3.50 -52.49 -0.18 2.45 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.77 2.82 -51.93 -0.15 1.62 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.99 5.13 -51.93 -0.27 1.72 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.71 6.44 -52.49 -0.34 1.38 16 34 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.38 6.00 8.84 -40.82 -0.36 5.64 16 36 H 0.40 7.73 7.20 -40.82 -0.29 7.44 16 LS Contribution 270.80 15.07 4.08 4.08 Total: -1.00 -29.45 270.80 -7.13 -36.59 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -4.10 Total: 17.60 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.12 Total: -20.85 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.23 Total: -47.96 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.40 Total: -7.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -3.83 Total: 17.89 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.45 -7.13 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.634 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds