Wall clock time and date at job start Mon Mar 30 2020 04:08:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30906 * 1
3 3 Si 1.86802 * 120.00030 * 2 1
4 4 H 1.48502 * 109.47118 * 273.26752 * 3 2 1
5 5 H 1.48500 * 109.46895 * 33.26737 * 3 2 1
6 6 H 1.48496 * 109.46808 * 153.26662 * 3 2 1
7 7 C 1.39888 * 120.00024 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00111 * 345.94383 * 7 2 1
9 9 C 1.41020 * 120.00234 * 165.94965 * 7 2 1
10 10 C 1.40673 * 120.26658 * 329.09055 * 9 7 2
11 11 C 1.38004 * 119.77019 * 179.74572 * 10 9 7
12 12 N 1.39857 * 119.83870 * 180.29871 * 11 10 9
13 13 C 1.48330 * 111.00042 * 33.26971 * 12 11 10
14 14 C 1.55937 * 105.02711 * 121.58104 * 13 12 11
15 15 H 1.09005 * 116.47431 * 159.87512 * 14 13 12
16 16 C 1.59095 * 98.89688 * 34.47099 * 14 13 12
17 17 C 1.49797 * 110.99946 * 150.47685 * 12 11 10
18 18 H 1.09005 * 116.41212 * 74.96526 * 17 12 11
19 19 C 1.56105 * 103.75361 * 305.51800 * 17 12 11
20 20 O 1.44107 * 105.40284 * 288.52596 * 19 17 12
21 21 C 1.39603 * 120.32031 * 0.55343 * 11 10 9
22 22 C 1.38061 * 120.54849 * 359.44228 * 21 11 10
23 23 C 1.38729 * 120.21816 * 0.27908 * 22 21 11
24 24 N 1.38865 * 120.16040 * 180.02562 * 23 22 21
25 25 H 0.96998 * 119.99932 * 359.97438 * 1 2 3
26 26 H 1.07998 * 120.11232 * 0.02726 * 10 9 7
27 27 H 1.09001 * 110.34017 * 241.80001 * 13 12 11
28 28 H 1.09004 * 110.34245 * 4.04589 * 13 12 11
29 29 H 1.08991 * 112.15903 * 190.42897 * 16 14 13
30 30 H 1.09001 * 113.41821 * 62.18635 * 16 14 13
31 31 H 1.09006 * 110.25551 * 47.50408 * 19 17 12
32 32 H 1.08998 * 110.26092 * 169.44806 * 19 17 12
33 33 H 1.07998 * 119.72454 * 179.72016 * 21 11 10
34 34 H 1.08000 * 119.88744 * 180.29579 * 22 21 11
35 35 H 0.97000 * 120.00392 * 354.67450 * 24 23 22
36 36 H 0.97001 * 120.00407 * 174.67377 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3091 0.0000 0.0000
3 14 2.2431 1.6177 0.0000
4 1 2.4215 2.0863 -1.3978
5 1 1.4768 2.6317 0.7680
6 1 3.5734 1.4211 0.6298
7 6 2.0085 -1.2115 -0.0005
8 1 1.4928 -2.1329 0.2262
9 6 3.3871 -1.2297 -0.2970
10 6 3.9355 -0.2796 -1.1777
11 6 5.2869 -0.3036 -1.4565
12 7 5.8347 0.6442 -2.3269
13 6 5.1254 1.9420 -2.2143
14 6 6.2269 2.9715 -1.8161
15 1 6.0031 4.0210 -2.0074
16 6 7.4476 2.3515 -2.6264
17 6 7.2627 0.9319 -1.9775
18 1 7.9916 0.1684 -2.2493
19 6 7.2022 1.3338 -0.4703
20 8 6.5799 2.6333 -0.4454
21 6 6.1088 -1.2725 -0.8781
22 6 5.5845 -2.2112 -0.0120
23 6 4.2302 -2.2044 0.2886
24 7 3.7043 -3.1488 1.1603
25 1 -0.4850 0.8400 0.0004
26 1 3.3020 0.4688 -1.6304
27 1 4.6605 2.2035 -3.1649
28 1 4.3754 1.8967 -1.4247
29 1 8.3974 2.8125 -2.3554
30 1 7.2905 2.3400 -3.7049
31 1 6.6003 0.6164 0.0877
32 1 8.2078 1.3872 -0.0532
33 1 7.1642 -1.2851 -1.1066
34 1 6.2310 -2.9530 0.4331
35 1 4.2673 -3.8618 1.5003
36 1 2.7738 -3.0955 1.4294
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000718286092.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:08:59
Heat of formation + Delta-G solvation = 25.048861 kcal
Electronic energy + Delta-G solvation = -20357.188959 eV
Core-core repulsion = 17421.224577 eV
Total energy + Delta-G solvation = -2935.964382 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.13199 -37.95384 -35.12294 -33.50265 -32.67802 -30.88980 -29.96959 -29.42032
-26.19351 -25.01374 -24.48285 -22.07388 -20.96616 -20.48058 -18.90203 -17.57971
-16.93774 -16.30084 -15.99483 -15.51179 -15.19041 -14.76080 -14.24156 -13.56983
-13.18704 -12.84849 -12.67230 -12.50150 -12.24055 -12.08330 -11.83882 -11.52256
-11.43628 -11.37376 -11.08544 -10.97652 -10.72547 -10.47006 -9.85751 -9.81430
-9.61432 -9.14901 -9.05872 -8.14978 -7.61045 -6.84373 -6.17150 -4.29423
2.62128 2.73922 3.10734 3.24473 3.37862 3.87861 4.03484 4.29361
4.40526 4.63763 4.67655 4.98406 5.05150 5.12911 5.44752 5.48070
5.65339 5.74432 5.80818 5.86027 5.94530 6.14943 6.19579 6.24615
6.26481 6.44903 6.58864 6.82315 6.94875 7.11977 7.23854 7.30960
7.46120 7.76470 7.91591 8.13446 8.34074 8.47269 8.78614 8.92664
8.99413 10.18146
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.020653 B = 0.010073 C = 0.007525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1355.385416 B = 2779.093491 C = 3719.893246
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.822 5.822
2 C 0.083 3.917
3 Si 0.908 3.092
4 H -0.270 1.270
5 H -0.296 1.296
6 H -0.242 1.242
7 C -0.449 4.449
8 H 0.088 0.912
9 C 0.065 3.935
10 C -0.235 4.235
11 C 0.086 3.914
12 N -0.463 5.463
13 C -0.005 4.005
14 C 0.047 3.953
15 H 0.137 0.863
16 C -0.156 4.156
17 C 0.035 3.965
18 H 0.129 0.871
19 C 0.008 3.992
20 O -0.377 6.377
21 C -0.216 4.216
22 C -0.160 4.160
23 C 0.123 3.877
24 N -0.882 5.882
25 H 0.282 0.718
26 H 0.105 0.895
27 H 0.086 0.914
28 H 0.082 0.918
29 H 0.083 0.917
30 H 0.094 0.906
31 H 0.099 0.901
32 H 0.066 0.934
33 H 0.096 0.904
34 H 0.095 0.905
35 H 0.379 0.621
36 H 0.395 0.605
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.218 3.574 -2.207 11.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.447 5.447
2 C -0.134 4.134
3 Si 0.736 3.264
4 H -0.196 1.196
5 H -0.224 1.224
6 H -0.165 1.165
7 C -0.479 4.479
8 H 0.106 0.894
9 C 0.059 3.941
10 C -0.258 4.258
11 C -0.011 4.011
12 N -0.180 5.180
13 C -0.132 4.132
14 C -0.011 4.011
15 H 0.154 0.846
16 C -0.194 4.194
17 C -0.072 4.072
18 H 0.147 0.853
19 C -0.069 4.069
20 O -0.296 6.296
21 C -0.238 4.238
22 C -0.185 4.185
23 C 0.021 3.979
24 N -0.423 5.423
25 H 0.092 0.908
26 H 0.123 0.877
27 H 0.104 0.896
28 H 0.100 0.900
29 H 0.101 0.899
30 H 0.112 0.888
31 H 0.117 0.883
32 H 0.084 0.916
33 H 0.114 0.886
34 H 0.113 0.887
35 H 0.204 0.796
36 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges 10.864 3.659 -2.599 11.755
hybrid contribution 0.120 0.542 0.697 0.891
sum 10.984 4.201 -1.902 11.913
Atomic orbital electron populations
1.69695 1.07812 1.29841 1.37376 1.26057 0.94741 1.01358 0.91249
0.86509 0.81053 0.80120 0.78699 1.19641 1.22360 1.16543 1.19102
0.91616 0.95390 1.41748 0.89381 1.17242 0.93011 0.91950 0.91904
1.20498 0.93341 1.05975 1.05987 1.18459 0.93416 0.94883 0.94352
1.62347 1.01457 1.06613 1.47535 1.24349 0.97306 0.88758 1.02767
1.25350 0.94538 0.99050 0.82150 0.84600 1.24627 0.98673 0.95180
1.00878 1.24985 0.91940 0.96929 0.93307 0.85340 1.24520 0.98608
0.85854 0.97908 1.89037 1.79697 1.34894 1.25960 1.19914 0.97173
1.00746 1.05949 1.19893 0.93006 1.01666 1.03947 1.17864 0.91421
0.94246 0.94391 1.41953 1.14398 1.31688 1.54247 0.90751 0.87722
0.89611 0.89960 0.89872 0.88789 0.88280 0.91593 0.88608 0.88709
0.79554 0.77581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -22.32 13.93 55.55 0.77 -21.55 16
2 C 0.08 2.21 5.45 -17.33 -0.09 2.11 16
3 Si 0.91 21.72 22.53 -169.99 -3.83 17.89 16
4 H -0.27 -6.17 6.10 56.52 0.34 -5.82 16
5 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16
6 H -0.24 -6.07 6.73 56.52 0.38 -5.69 16
7 C -0.45 -12.03 8.88 -37.91 -0.34 -12.37 16
8 H 0.09 2.42 7.13 -52.49 -0.37 2.05 16
9 C 0.06 1.64 5.13 -106.66 -0.55 1.09 16
10 C -0.24 -5.79 5.92 -38.75 -0.23 -6.02 16
11 C 0.09 1.90 4.52 -83.77 -0.38 1.52 16
12 N -0.46 -8.88 5.42 -154.06 -0.83 -9.72 16
13 C -0.01 -0.10 5.60 -1.46 -0.01 -0.10 16
14 C 0.05 0.72 5.98 -21.77 -0.13 0.59 16
15 H 0.14 1.67 8.14 -51.93 -0.42 1.25 16
16 C -0.16 -2.01 7.00 -21.06 -0.15 -2.16 16
17 C 0.04 0.55 4.21 -62.16 -0.26 0.28 16
18 H 0.13 1.74 7.46 -51.93 -0.39 1.35 16
19 C 0.01 0.14 6.51 38.82 0.25 0.40 16
20 O -0.38 -6.95 11.27 -35.23 -0.40 -7.35 16
21 C -0.22 -4.42 7.32 -39.14 -0.29 -4.71 16
22 C -0.16 -3.33 9.87 -39.46 -0.39 -3.72 16
23 C 0.12 2.79 6.79 -83.23 -0.56 2.22 16
24 N -0.88 -16.99 8.97 32.75 0.29 -16.69 16
25 H 0.28 7.04 8.30 -40.82 -0.34 6.71 16
26 H 0.11 2.64 3.50 -52.49 -0.18 2.45 16
27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16
28 H 0.08 1.77 2.82 -51.93 -0.15 1.62 16
29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16
31 H 0.10 1.99 5.13 -51.93 -0.27 1.72 16
32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
33 H 0.10 1.71 6.44 -52.49 -0.34 1.38 16
34 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16
35 H 0.38 6.00 8.84 -40.82 -0.36 5.64 16
36 H 0.40 7.73 7.20 -40.82 -0.29 7.44 16
LS Contribution 270.80 15.07 4.08 4.08
Total: -1.00 -29.45 270.80 -7.13 -36.59
By element:
Atomic # 1 Polarization: 21.70 SS G_CDS: -4.10 Total: 17.60 kcal
Atomic # 6 Polarization: -17.73 SS G_CDS: -3.12 Total: -20.85 kcal
Atomic # 7 Polarization: -48.19 SS G_CDS: 0.23 Total: -47.96 kcal
Atomic # 8 Polarization: -6.95 SS G_CDS: -0.40 Total: -7.35 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -3.83 Total: 17.89 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -29.45 -7.13 -36.59 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000718286092.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.634 kcal
(2) G-P(sol) polarization free energy of solvation -29.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.049 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds