Wall clock time and date at job start Mon Mar 30 2020 04:08:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30906 * 1
3 3 Si 1.86802 * 120.00030 * 2 1
4 4 H 1.48502 * 109.47118 * 273.26752 * 3 2 1
5 5 H 1.48500 * 109.46895 * 33.26737 * 3 2 1
6 6 H 1.48496 * 109.46808 * 153.26662 * 3 2 1
7 7 C 1.39888 * 120.00024 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00111 * 345.94383 * 7 2 1
9 9 C 1.41020 * 120.00234 * 165.94965 * 7 2 1
10 10 C 1.40673 * 120.26658 * 329.09055 * 9 7 2
11 11 C 1.38004 * 119.77019 * 179.74572 * 10 9 7
12 12 N 1.39857 * 119.83870 * 180.29871 * 11 10 9
13 13 C 1.48330 * 111.00042 * 33.26971 * 12 11 10
14 14 C 1.55937 * 105.02711 * 121.58104 * 13 12 11
15 15 H 1.09005 * 116.47431 * 159.87512 * 14 13 12
16 16 C 1.59095 * 98.89688 * 34.47099 * 14 13 12
17 17 C 1.49797 * 110.99946 * 150.47685 * 12 11 10
18 18 H 1.09005 * 116.41212 * 74.96526 * 17 12 11
19 19 C 1.56105 * 103.75361 * 305.51800 * 17 12 11
20 20 O 1.44107 * 105.40284 * 288.52596 * 19 17 12
21 21 C 1.39603 * 120.32031 * 0.55343 * 11 10 9
22 22 C 1.38061 * 120.54849 * 359.44228 * 21 11 10
23 23 C 1.38729 * 120.21816 * 0.27908 * 22 21 11
24 24 N 1.38865 * 120.16040 * 180.02562 * 23 22 21
25 25 H 0.96998 * 119.99932 * 359.97438 * 1 2 3
26 26 H 1.07998 * 120.11232 * 0.02726 * 10 9 7
27 27 H 1.09001 * 110.34017 * 241.80001 * 13 12 11
28 28 H 1.09004 * 110.34245 * 4.04589 * 13 12 11
29 29 H 1.08991 * 112.15903 * 190.42897 * 16 14 13
30 30 H 1.09001 * 113.41821 * 62.18635 * 16 14 13
31 31 H 1.09006 * 110.25551 * 47.50408 * 19 17 12
32 32 H 1.08998 * 110.26092 * 169.44806 * 19 17 12
33 33 H 1.07998 * 119.72454 * 179.72016 * 21 11 10
34 34 H 1.08000 * 119.88744 * 180.29579 * 22 21 11
35 35 H 0.97000 * 120.00392 * 354.67450 * 24 23 22
36 36 H 0.97001 * 120.00407 * 174.67377 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3091 0.0000 0.0000
3 14 2.2431 1.6177 0.0000
4 1 2.4215 2.0863 -1.3978
5 1 1.4768 2.6317 0.7680
6 1 3.5734 1.4211 0.6298
7 6 2.0085 -1.2115 -0.0005
8 1 1.4928 -2.1329 0.2262
9 6 3.3871 -1.2297 -0.2970
10 6 3.9355 -0.2796 -1.1777
11 6 5.2869 -0.3036 -1.4565
12 7 5.8347 0.6442 -2.3269
13 6 5.1254 1.9420 -2.2143
14 6 6.2269 2.9715 -1.8161
15 1 6.0031 4.0210 -2.0074
16 6 7.4476 2.3515 -2.6264
17 6 7.2627 0.9319 -1.9775
18 1 7.9916 0.1684 -2.2493
19 6 7.2022 1.3338 -0.4703
20 8 6.5799 2.6333 -0.4454
21 6 6.1088 -1.2725 -0.8781
22 6 5.5845 -2.2112 -0.0120
23 6 4.2302 -2.2044 0.2886
24 7 3.7043 -3.1488 1.1603
25 1 -0.4850 0.8400 0.0004
26 1 3.3020 0.4688 -1.6304
27 1 4.6605 2.2035 -3.1649
28 1 4.3754 1.8967 -1.4247
29 1 8.3974 2.8125 -2.3554
30 1 7.2905 2.3400 -3.7049
31 1 6.6003 0.6164 0.0877
32 1 8.2078 1.3872 -0.0532
33 1 7.1642 -1.2851 -1.1066
34 1 6.2310 -2.9530 0.4331
35 1 4.2673 -3.8618 1.5003
36 1 2.7738 -3.0955 1.4294
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000718286092.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:08:59
Heat of formation + Delta-G solvation = 1.786892 kcal
Electronic energy + Delta-G solvation = -20358.197673 eV
Core-core repulsion = 17421.224577 eV
Total energy + Delta-G solvation = -2936.973097 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-42.47250 -39.62850 -36.62603 -35.40666 -34.18835 -32.60445 -31.33922 -30.85356
-27.82198 -26.68493 -25.96004 -23.67321 -22.36277 -21.93733 -20.41875 -19.31568
-18.52839 -17.78433 -17.51516 -17.07765 -16.66035 -16.36828 -15.83878 -15.32160
-14.90617 -14.41708 -14.25612 -13.85312 -13.75175 -13.59093 -13.34850 -13.13530
-12.87802 -12.72568 -12.62157 -12.50890 -12.28315 -12.04201 -11.75559 -11.49465
-11.30396 -10.98479 -10.47488 -9.64983 -9.43433 -8.82529 -7.85569 -6.25578
0.81455 0.97749 1.18029 1.33433 1.42869 2.08854 2.56062 2.73383
3.06116 3.26648 3.42884 3.53973 3.59598 3.82224 3.89753 4.20371
4.26976 4.40284 4.57137 4.60724 4.75714 4.78963 4.81588 4.85952
4.94293 4.96043 4.99518 5.20438 5.38101 5.43120 5.62738 5.70137
5.74789 5.99734 6.21793 6.23336 6.57934 6.64294 6.86980 7.14758
7.46751 8.25568
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.020653 B = 0.010073 C = 0.007525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1355.385416 B = 2779.093491 C = 3719.893246
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.864 5.864
2 C 0.046 3.954
3 Si 0.962 3.038
4 H -0.261 1.261
5 H -0.291 1.291
6 H -0.265 1.265
7 C -0.472 4.472
8 H 0.065 0.935
9 C 0.029 3.971
10 C -0.244 4.244
11 C 0.076 3.924
12 N -0.472 5.472
13 C -0.017 4.017
14 C 0.045 3.955
15 H 0.166 0.834
16 C -0.132 4.132
17 C 0.034 3.966
18 H 0.156 0.844
19 C 0.005 3.995
20 O -0.404 6.404
21 C -0.193 4.193
22 C -0.161 4.161
23 C 0.113 3.887
24 N -0.873 5.873
25 H 0.287 0.713
26 H 0.090 0.910
27 H 0.095 0.905
28 H 0.048 0.952
29 H 0.112 0.888
30 H 0.110 0.890
31 H 0.062 0.938
32 H 0.095 0.905
33 H 0.132 0.868
34 H 0.131 0.869
35 H 0.397 0.603
36 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.257 4.159 -3.229 16.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.493 5.493
2 C -0.165 4.165
3 Si 0.789 3.211
4 H -0.187 1.187
5 H -0.218 1.218
6 H -0.190 1.190
7 C -0.503 4.503
8 H 0.083 0.917
9 C 0.023 3.977
10 C -0.266 4.266
11 C -0.022 4.022
12 N -0.188 5.188
13 C -0.144 4.144
14 C -0.013 4.013
15 H 0.183 0.817
16 C -0.170 4.170
17 C -0.072 4.072
18 H 0.173 0.827
19 C -0.072 4.072
20 O -0.324 6.324
21 C -0.215 4.215
22 C -0.186 4.186
23 C 0.009 3.991
24 N -0.415 5.415
25 H 0.097 0.903
26 H 0.108 0.892
27 H 0.114 0.886
28 H 0.066 0.934
29 H 0.130 0.870
30 H 0.129 0.871
31 H 0.081 0.919
32 H 0.113 0.887
33 H 0.150 0.850
34 H 0.149 0.851
35 H 0.226 0.774
36 H 0.220 0.780
Dipole moment (debyes) X Y Z Total
from point charges 14.925 4.228 -3.623 15.929
hybrid contribution -0.872 0.268 0.967 1.329
sum 14.053 4.496 -2.656 14.992
Atomic orbital electron populations
1.69731 1.08539 1.30487 1.40577 1.26558 0.95244 1.03321 0.91421
0.85701 0.78653 0.77896 0.78800 1.18704 1.21848 1.18997 1.19094
0.92764 0.94734 1.43755 0.91712 1.17416 0.92851 0.93965 0.93421
1.20602 0.94769 1.05326 1.05936 1.18643 0.92672 0.96149 0.94749
1.62311 1.03542 1.06414 1.46515 1.24430 0.97941 0.89883 1.02166
1.25685 0.94400 0.99855 0.81316 0.81674 1.24614 0.98584 0.92544
1.01236 1.25314 0.90029 0.99322 0.92558 0.82657 1.24502 0.99085
0.84872 0.98749 1.89016 1.79988 1.35333 1.28017 1.20411 0.98703
0.98851 1.03548 1.20339 0.92490 1.02214 1.03513 1.18093 0.92221
0.94099 0.94663 1.41884 1.14539 1.31590 1.53455 0.90327 0.89189
0.88647 0.93412 0.86975 0.87130 0.91950 0.88674 0.85013 0.85136
0.77394 0.77956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -49.59 13.93 21.82 0.30 -49.28 16
2 C 0.05 2.59 5.45 85.23 0.46 3.06 16
3 Si 0.96 47.32 22.53 68.60 1.55 48.86 16
4 H -0.26 -12.17 6.10 99.48 0.61 -11.56 16
5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
6 H -0.27 -13.81 6.73 99.48 0.67 -13.14 16
7 C -0.47 -26.73 8.88 23.35 0.21 -26.52 16
8 H 0.06 3.82 7.13 -2.91 -0.02 3.80 16
9 C 0.03 1.51 5.13 -21.18 -0.11 1.40 16
10 C -0.24 -12.15 5.92 22.81 0.14 -12.01 16
11 C 0.08 3.24 4.52 38.13 0.17 3.41 16
12 N -0.47 -16.86 5.42 -641.33 -3.47 -20.33 16
13 C -0.02 -0.62 5.60 87.04 0.49 -0.13 16
14 C 0.04 1.23 5.98 33.81 0.20 1.43 16
15 H 0.17 3.44 8.14 -2.38 -0.02 3.42 16
16 C -0.13 -2.71 7.00 34.26 0.24 -2.47 16
17 C 0.03 0.89 4.21 46.90 0.20 1.09 16
18 H 0.16 3.25 7.46 -2.38 -0.02 3.23 16
19 C 0.01 0.16 6.51 73.06 0.48 0.63 16
20 O -0.40 -13.89 11.27 -148.98 -1.68 -15.57 16
21 C -0.19 -7.31 7.32 22.56 0.17 -7.14 16
22 C -0.16 -6.24 9.87 22.35 0.22 -6.02 16
23 C 0.11 5.07 6.79 38.97 0.26 5.33 16
24 N -0.87 -33.37 8.97 -50.31 -0.45 -33.82 16
25 H 0.29 15.07 8.30 -92.71 -0.77 14.30 16
26 H 0.09 4.68 3.50 -2.91 -0.01 4.67 16
27 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16
28 H 0.05 2.05 2.82 -2.38 -0.01 2.04 16
29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16
30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16
31 H 0.06 2.37 5.13 -2.38 -0.01 2.36 16
32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16
33 H 0.13 4.01 6.44 -2.91 -0.02 3.99 16
34 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16
35 H 0.40 11.96 8.84 -92.71 -0.82 11.14 16
36 H 0.39 15.79 7.20 -92.71 -0.67 15.12 16
Total: -1.00 -67.48 270.80 -1.11 -68.59
By element:
Atomic # 1 Polarization: 39.99 SS G_CDS: -0.48 Total: 39.51 kcal
Atomic # 6 Polarization: -41.08 SS G_CDS: 3.12 Total: -37.96 kcal
Atomic # 7 Polarization: -99.82 SS G_CDS: -3.62 Total: -103.44 kcal
Atomic # 8 Polarization: -13.89 SS G_CDS: -1.68 Total: -15.57 kcal
Atomic # 14 Polarization: 47.32 SS G_CDS: 1.55 Total: 48.86 kcal
Total: -67.48 -1.11 -68.59 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000718286092.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.376 kcal
(2) G-P(sol) polarization free energy of solvation -67.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds