Wall clock time and date at job start Mon Mar 30 2020 04:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86802 * 120.00030 * 2 1 4 4 H 1.48502 * 109.47118 * 273.26752 * 3 2 1 5 5 H 1.48500 * 109.46895 * 33.26737 * 3 2 1 6 6 H 1.48496 * 109.46808 * 153.26662 * 3 2 1 7 7 C 1.39888 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00111 * 345.94383 * 7 2 1 9 9 C 1.41020 * 120.00234 * 165.94965 * 7 2 1 10 10 C 1.40673 * 120.26658 * 329.09055 * 9 7 2 11 11 C 1.38004 * 119.77019 * 179.74572 * 10 9 7 12 12 N 1.39857 * 119.83870 * 180.29871 * 11 10 9 13 13 C 1.48330 * 111.00042 * 33.26971 * 12 11 10 14 14 C 1.55937 * 105.02711 * 121.58104 * 13 12 11 15 15 H 1.09005 * 116.47431 * 159.87512 * 14 13 12 16 16 C 1.59095 * 98.89688 * 34.47099 * 14 13 12 17 17 C 1.49797 * 110.99946 * 150.47685 * 12 11 10 18 18 H 1.09005 * 116.41212 * 74.96526 * 17 12 11 19 19 C 1.56105 * 103.75361 * 305.51800 * 17 12 11 20 20 O 1.44107 * 105.40284 * 288.52596 * 19 17 12 21 21 C 1.39603 * 120.32031 * 0.55343 * 11 10 9 22 22 C 1.38061 * 120.54849 * 359.44228 * 21 11 10 23 23 C 1.38729 * 120.21816 * 0.27908 * 22 21 11 24 24 N 1.38865 * 120.16040 * 180.02562 * 23 22 21 25 25 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.11232 * 0.02726 * 10 9 7 27 27 H 1.09001 * 110.34017 * 241.80001 * 13 12 11 28 28 H 1.09004 * 110.34245 * 4.04589 * 13 12 11 29 29 H 1.08991 * 112.15903 * 190.42897 * 16 14 13 30 30 H 1.09001 * 113.41821 * 62.18635 * 16 14 13 31 31 H 1.09006 * 110.25551 * 47.50408 * 19 17 12 32 32 H 1.08998 * 110.26092 * 169.44806 * 19 17 12 33 33 H 1.07998 * 119.72454 * 179.72016 * 21 11 10 34 34 H 1.08000 * 119.88744 * 180.29579 * 22 21 11 35 35 H 0.97000 * 120.00392 * 354.67450 * 24 23 22 36 36 H 0.97001 * 120.00407 * 174.67377 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4215 2.0863 -1.3978 5 1 1.4768 2.6317 0.7680 6 1 3.5734 1.4211 0.6298 7 6 2.0085 -1.2115 -0.0005 8 1 1.4928 -2.1329 0.2262 9 6 3.3871 -1.2297 -0.2970 10 6 3.9355 -0.2796 -1.1777 11 6 5.2869 -0.3036 -1.4565 12 7 5.8347 0.6442 -2.3269 13 6 5.1254 1.9420 -2.2143 14 6 6.2269 2.9715 -1.8161 15 1 6.0031 4.0210 -2.0074 16 6 7.4476 2.3515 -2.6264 17 6 7.2627 0.9319 -1.9775 18 1 7.9916 0.1684 -2.2493 19 6 7.2022 1.3338 -0.4703 20 8 6.5799 2.6333 -0.4454 21 6 6.1088 -1.2725 -0.8781 22 6 5.5845 -2.2112 -0.0120 23 6 4.2302 -2.2044 0.2886 24 7 3.7043 -3.1488 1.1603 25 1 -0.4850 0.8400 0.0004 26 1 3.3020 0.4688 -1.6304 27 1 4.6605 2.2035 -3.1649 28 1 4.3754 1.8967 -1.4247 29 1 8.3974 2.8125 -2.3554 30 1 7.2905 2.3400 -3.7049 31 1 6.6003 0.6164 0.0877 32 1 8.2078 1.3872 -0.0532 33 1 7.1642 -1.2851 -1.1066 34 1 6.2310 -2.9530 0.4331 35 1 4.2673 -3.8618 1.5003 36 1 2.7738 -3.0955 1.4294 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718286092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:59 Heat of formation + Delta-G solvation = 1.786892 kcal Electronic energy + Delta-G solvation = -20358.197673 eV Core-core repulsion = 17421.224577 eV Total energy + Delta-G solvation = -2936.973097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.47250 -39.62850 -36.62603 -35.40666 -34.18835 -32.60445 -31.33922 -30.85356 -27.82198 -26.68493 -25.96004 -23.67321 -22.36277 -21.93733 -20.41875 -19.31568 -18.52839 -17.78433 -17.51516 -17.07765 -16.66035 -16.36828 -15.83878 -15.32160 -14.90617 -14.41708 -14.25612 -13.85312 -13.75175 -13.59093 -13.34850 -13.13530 -12.87802 -12.72568 -12.62157 -12.50890 -12.28315 -12.04201 -11.75559 -11.49465 -11.30396 -10.98479 -10.47488 -9.64983 -9.43433 -8.82529 -7.85569 -6.25578 0.81455 0.97749 1.18029 1.33433 1.42869 2.08854 2.56062 2.73383 3.06116 3.26648 3.42884 3.53973 3.59598 3.82224 3.89753 4.20371 4.26976 4.40284 4.57137 4.60724 4.75714 4.78963 4.81588 4.85952 4.94293 4.96043 4.99518 5.20438 5.38101 5.43120 5.62738 5.70137 5.74789 5.99734 6.21793 6.23336 6.57934 6.64294 6.86980 7.14758 7.46751 8.25568 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.010073 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.385416 B = 2779.093491 C = 3719.893246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.046 3.954 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.472 4.472 8 H 0.065 0.935 9 C 0.029 3.971 10 C -0.244 4.244 11 C 0.076 3.924 12 N -0.472 5.472 13 C -0.017 4.017 14 C 0.045 3.955 15 H 0.166 0.834 16 C -0.132 4.132 17 C 0.034 3.966 18 H 0.156 0.844 19 C 0.005 3.995 20 O -0.404 6.404 21 C -0.193 4.193 22 C -0.161 4.161 23 C 0.113 3.887 24 N -0.873 5.873 25 H 0.287 0.713 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.397 0.603 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.257 4.159 -3.229 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.503 4.503 8 H 0.083 0.917 9 C 0.023 3.977 10 C -0.266 4.266 11 C -0.022 4.022 12 N -0.188 5.188 13 C -0.144 4.144 14 C -0.013 4.013 15 H 0.183 0.817 16 C -0.170 4.170 17 C -0.072 4.072 18 H 0.173 0.827 19 C -0.072 4.072 20 O -0.324 6.324 21 C -0.215 4.215 22 C -0.186 4.186 23 C 0.009 3.991 24 N -0.415 5.415 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.226 0.774 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 14.925 4.228 -3.623 15.929 hybrid contribution -0.872 0.268 0.967 1.329 sum 14.053 4.496 -2.656 14.992 Atomic orbital electron populations 1.69731 1.08539 1.30487 1.40577 1.26558 0.95244 1.03321 0.91421 0.85701 0.78653 0.77896 0.78800 1.18704 1.21848 1.18997 1.19094 0.92764 0.94734 1.43755 0.91712 1.17416 0.92851 0.93965 0.93421 1.20602 0.94769 1.05326 1.05936 1.18643 0.92672 0.96149 0.94749 1.62311 1.03542 1.06414 1.46515 1.24430 0.97941 0.89883 1.02166 1.25685 0.94400 0.99855 0.81316 0.81674 1.24614 0.98584 0.92544 1.01236 1.25314 0.90029 0.99322 0.92558 0.82657 1.24502 0.99085 0.84872 0.98749 1.89016 1.79988 1.35333 1.28017 1.20411 0.98703 0.98851 1.03548 1.20339 0.92490 1.02214 1.03513 1.18093 0.92221 0.94099 0.94663 1.41884 1.14539 1.31590 1.53455 0.90327 0.89189 0.88647 0.93412 0.86975 0.87130 0.91950 0.88674 0.85013 0.85136 0.77394 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.59 13.93 21.82 0.30 -49.28 16 2 C 0.05 2.59 5.45 85.23 0.46 3.06 16 3 Si 0.96 47.32 22.53 68.60 1.55 48.86 16 4 H -0.26 -12.17 6.10 99.48 0.61 -11.56 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -13.81 6.73 99.48 0.67 -13.14 16 7 C -0.47 -26.73 8.88 23.35 0.21 -26.52 16 8 H 0.06 3.82 7.13 -2.91 -0.02 3.80 16 9 C 0.03 1.51 5.13 -21.18 -0.11 1.40 16 10 C -0.24 -12.15 5.92 22.81 0.14 -12.01 16 11 C 0.08 3.24 4.52 38.13 0.17 3.41 16 12 N -0.47 -16.86 5.42 -641.33 -3.47 -20.33 16 13 C -0.02 -0.62 5.60 87.04 0.49 -0.13 16 14 C 0.04 1.23 5.98 33.81 0.20 1.43 16 15 H 0.17 3.44 8.14 -2.38 -0.02 3.42 16 16 C -0.13 -2.71 7.00 34.26 0.24 -2.47 16 17 C 0.03 0.89 4.21 46.90 0.20 1.09 16 18 H 0.16 3.25 7.46 -2.38 -0.02 3.23 16 19 C 0.01 0.16 6.51 73.06 0.48 0.63 16 20 O -0.40 -13.89 11.27 -148.98 -1.68 -15.57 16 21 C -0.19 -7.31 7.32 22.56 0.17 -7.14 16 22 C -0.16 -6.24 9.87 22.35 0.22 -6.02 16 23 C 0.11 5.07 6.79 38.97 0.26 5.33 16 24 N -0.87 -33.37 8.97 -50.31 -0.45 -33.82 16 25 H 0.29 15.07 8.30 -92.71 -0.77 14.30 16 26 H 0.09 4.68 3.50 -2.91 -0.01 4.67 16 27 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.05 2.05 2.82 -2.38 -0.01 2.04 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.37 5.13 -2.38 -0.01 2.36 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.13 4.01 6.44 -2.91 -0.02 3.99 16 34 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 35 H 0.40 11.96 8.84 -92.71 -0.82 11.14 16 36 H 0.39 15.79 7.20 -92.71 -0.67 15.12 16 Total: -1.00 -67.48 270.80 -1.11 -68.59 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.48 Total: 39.51 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 3.12 Total: -37.96 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.62 Total: -103.44 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.68 Total: -15.57 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.55 Total: 48.86 kcal Total: -67.48 -1.11 -68.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.376 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds