Wall clock time and date at job start Mon Mar 30 2020 04:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99715 * 2 1 4 4 C 1.50700 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.32990 * 89.99869 * 4 3 2 6 6 N 1.31863 * 120.85937 * 179.97438 * 5 4 3 7 7 C 1.32518 * 121.62790 * 0.02586 * 6 5 4 8 8 N 1.38838 * 119.71703 * 180.02562 * 7 6 5 9 9 C 1.36915 * 119.99796 * 275.24265 * 8 7 6 10 10 H 1.08000 * 119.99629 * 340.17461 * 9 8 7 11 11 C 1.38817 * 120.00077 * 160.17611 * 9 8 7 12 12 N 1.31561 * 119.99974 * 336.00762 * 11 9 8 13 13 Si 1.86799 * 119.99835 * 156.01396 * 11 9 8 14 14 H 1.48500 * 109.47290 * 94.94165 * 13 11 9 15 15 H 1.48506 * 109.46978 * 214.94016 * 13 11 9 16 16 H 1.48495 * 109.47385 * 334.93623 * 13 11 9 17 17 C 1.46494 * 120.00410 * 95.23682 * 8 7 6 18 18 C 1.47201 * 109.47530 * 275.73793 * 17 8 7 19 19 N 8.26851 * 148.62133 * 325.78297 * 2 1 3 20 20 C 1.39190 * 120.57400 * 359.97304 * 7 6 5 21 21 C 1.50706 * 120.45209 * 180.02562 * 20 7 6 22 22 C 1.38352 * 119.09105 * 359.76945 * 20 7 6 23 23 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47322 * 299.99700 * 1 2 3 25 25 H 1.08999 * 109.47190 * 60.00470 * 1 2 3 26 26 H 1.00895 * 111.00488 * 236.04621 * 2 1 3 27 27 H 1.09000 * 109.46917 * 299.99642 * 3 2 1 28 28 H 1.08995 * 109.47504 * 59.99488 * 3 2 1 29 29 H 1.07992 * 119.57112 * 359.97438 * 5 4 3 30 30 H 0.96996 * 120.00241 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.47009 * 35.73903 * 17 8 7 32 32 H 1.09001 * 109.47203 * 155.73620 * 17 8 7 33 33 H 1.08999 * 109.46635 * 90.40161 * 21 20 7 34 34 H 1.08991 * 109.46862 * 210.39838 * 21 20 7 35 35 H 1.08998 * 109.47145 * 330.39856 * 21 20 7 36 36 H 1.08003 * 120.74503 * 180.26722 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1998 1.3125 -1.1917 6 7 5.5180 1.2779 -1.2033 7 6 6.2226 1.2594 -0.0811 8 7 7.6093 1.2235 -0.1396 9 6 8.2578 0.0256 -0.2771 10 1 7.7521 -0.8944 -0.0238 11 6 9.5655 -0.0064 -0.7419 12 7 10.0264 0.9820 -1.4778 13 14 10.6706 -1.4529 -0.3226 14 1 10.6275 -2.4451 -1.4267 15 1 12.0647 -0.9744 -0.1412 16 1 10.1983 -2.0890 0.9333 17 6 8.3785 2.4673 -0.0545 18 6 8.4635 3.0841 -1.3883 19 7 8.5282 3.5601 -2.4210 20 6 5.5846 1.2766 1.1558 21 6 6.3886 1.2560 2.4303 22 6 4.2024 1.3183 1.1993 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8307 -0.5261 -0.7813 27 1 1.6459 1.8947 -0.8900 28 1 1.6459 1.8948 0.8899 29 1 3.6588 1.3264 -2.1262 30 1 10.9402 0.9598 -1.8023 31 1 7.8839 3.1541 0.6325 32 1 9.3825 2.2494 0.3098 33 1 6.6033 2.2785 2.7410 34 1 5.8195 0.7511 3.2108 35 1 7.3245 0.7236 2.2609 36 1 3.6800 1.3369 2.1444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722995195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:50 Heat of formation + Delta-G solvation = 91.599201 kcal Electronic energy + Delta-G solvation = -19099.832308 eV Core-core repulsion = 16199.046517 eV Total energy + Delta-G solvation = -2900.785791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.82069 -36.82191 -35.69744 -34.21115 -32.89732 -32.03447 -30.50697 -27.38701 -26.86533 -26.19369 -24.12395 -23.07663 -21.78220 -20.28811 -17.63240 -17.00192 -16.48192 -15.97205 -15.37603 -14.75312 -14.63143 -14.27243 -13.95496 -13.51357 -13.11978 -13.02475 -12.55561 -12.35981 -12.23339 -12.08377 -11.85891 -11.79841 -11.69367 -11.33549 -11.05328 -11.00312 -10.87325 -10.38431 -10.14904 -10.01802 -9.13458 -9.03804 -8.57989 -8.57485 -8.00955 -7.40399 -6.09255 -3.52980 1.65919 1.92625 3.28126 3.36391 3.38782 3.98196 4.14539 4.34174 4.43695 4.59924 4.86024 4.97727 5.10971 5.12172 5.23931 5.33196 5.41928 5.46145 5.57294 5.62811 5.70552 5.78524 5.85711 6.09844 6.18284 6.25433 6.40468 6.63833 6.73448 6.81859 6.86029 6.90945 7.17692 7.25398 7.64550 8.07851 8.76252 8.90964 9.19131 9.53330 9.88255 10.98030 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.005740 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.563822 B = 4876.842807 C = 5266.340903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.692 5.692 3 C 0.111 3.889 4 C -0.169 4.169 5 C 0.106 3.894 6 N -0.491 5.491 7 C 0.394 3.606 8 N -0.523 5.523 9 C -0.271 4.271 10 H 0.083 0.917 11 C 0.016 3.984 12 N -0.886 5.886 13 Si 0.912 3.088 14 H -0.286 1.286 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.266 3.734 18 C 0.245 3.755 19 N -0.493 5.493 20 C -0.142 4.142 21 C -0.101 4.101 22 C -0.057 4.057 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.344 0.656 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.135 0.865 30 H 0.263 0.737 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.932 0.412 8.731 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.018 4.018 4 C -0.172 4.172 5 C -0.054 4.054 6 N -0.202 5.202 7 C 0.167 3.833 8 N -0.241 5.241 9 C -0.398 4.398 10 H 0.100 0.900 11 C -0.185 4.185 12 N -0.527 5.527 13 Si 0.741 3.259 14 H -0.213 1.213 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.138 3.862 18 C -0.074 4.074 19 N -0.174 5.174 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.083 4.083 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.162 0.838 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.152 0.848 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.119 1.041 7.013 14.041 hybrid contribution -0.106 -0.816 -0.116 0.831 sum -12.225 0.225 6.897 14.038 Atomic orbital electron populations 1.22196 0.88051 1.01757 1.00218 1.60454 1.07196 1.14109 1.50481 1.20699 0.90749 0.89535 1.00804 1.20513 0.95324 1.06826 0.94584 1.22360 0.90153 0.96530 0.96390 1.68028 1.07229 1.11487 1.33457 1.18616 0.87350 0.90590 0.86792 1.41671 0.96714 1.03750 1.81955 1.19202 0.94918 0.84912 1.40778 0.89966 1.25037 0.99160 0.98179 0.96161 1.69946 1.16914 1.33459 1.32340 0.86134 0.79752 0.81456 0.78603 1.21306 1.21169 1.19819 1.18219 0.98702 0.84424 0.84891 1.30197 0.90760 0.90388 0.96078 1.80909 1.11092 1.13666 1.11687 1.21148 0.93800 1.02831 0.96974 1.20616 1.00826 1.01777 0.92658 1.21103 0.92970 0.96828 0.97416 0.91523 0.91808 0.96183 0.83795 0.94588 0.90534 0.84773 0.92648 0.91876 0.86760 0.92010 0.92753 0.89215 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.07 0.64 0.88 16 2 N -0.69 -7.82 6.84 -122.42 -0.84 -8.66 16 3 C 0.11 1.30 5.83 -4.98 -0.03 1.27 16 4 C -0.17 -2.53 5.41 -104.43 -0.57 -3.09 16 5 C 0.11 1.86 10.85 -17.56 -0.19 1.67 16 6 N -0.49 -10.89 10.40 -12.43 -0.13 -11.01 16 7 C 0.39 8.42 5.99 -155.06 -0.93 7.49 16 8 N -0.52 -12.05 1.62 -118.17 -0.19 -12.24 16 9 C -0.27 -6.81 9.29 -15.07 -0.14 -6.95 16 10 H 0.08 2.09 7.94 -52.49 -0.42 1.68 16 11 C 0.02 0.41 4.77 -17.45 -0.08 0.33 16 12 N -0.89 -24.02 9.72 55.49 0.54 -23.48 16 13 Si 0.91 20.17 29.62 -169.99 -5.03 15.14 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 17 C 0.27 5.72 5.41 -6.83 -0.04 5.69 16 18 C 0.24 6.07 13.51 -20.66 -0.28 5.79 16 19 N -0.49 -13.19 18.56 42.27 0.78 -12.41 16 20 C -0.14 -2.47 5.92 -104.22 -0.62 -3.09 16 21 C -0.10 -1.49 9.79 36.01 0.35 -1.13 16 22 C -0.06 -0.86 9.53 -39.32 -0.37 -1.23 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.34 3.89 8.81 -39.29 -0.35 3.55 16 27 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.11 2.48 6.70 -51.93 -0.35 2.13 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 1.48 7.21 -51.93 -0.37 1.11 16 36 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -31.07 315.08 -7.21 -38.28 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.84 Total: 2.02 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.25 Total: 7.62 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: 0.17 Total: -67.80 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.07 -7.21 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722995195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.877 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds