Wall clock time and date at job start Mon Mar 30 2020 04:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47830 * 2 1 4 4 C 1.50698 * 109.46867 * 120.00385 * 2 1 3 5 5 H 1.07998 * 120.00158 * 119.99672 * 4 2 1 6 6 C 1.37879 * 120.00187 * 299.99510 * 4 2 1 7 7 N 1.31515 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00287 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46915 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47338 * 299.99939 * 8 6 4 11 11 H 1.48499 * 109.46942 * 60.00181 * 8 6 4 12 12 N 1.46500 * 109.46725 * 239.99892 * 2 1 3 13 13 N 1.40101 * 120.00089 * 90.00768 * 12 2 1 14 14 C 1.29744 * 119.99969 * 186.19163 * 13 12 2 15 15 C 1.50965 * 125.97554 * 192.98977 * 14 13 12 16 16 C 1.53481 * 105.31544 * 179.97438 * 15 14 13 17 17 C 1.50982 * 106.36103 * 0.02562 * 16 15 14 18 18 C 1.39246 * 109.65991 * 359.71787 * 17 16 15 19 19 C 1.40206 * 119.40545 * 179.62427 * 18 17 16 20 20 C 1.37800 * 120.20257 * 0.62191 * 19 18 17 21 21 C 1.38255 * 120.20810 * 359.70171 * 20 19 18 22 22 C 1.38723 * 130.46786 * 179.97438 * 17 16 15 23 23 O 1.35901 * 119.89964 * 359.97438 * 22 17 16 24 24 H 1.08994 * 109.47830 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47005 * 300.00172 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99518 * 1 2 3 27 27 H 0.97001 * 119.99827 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99827 * 269.99788 * 12 2 1 29 29 H 1.08996 * 110.27289 * 298.95807 * 15 14 13 30 30 H 1.09001 * 110.27414 * 60.94392 * 15 14 13 31 31 H 1.08995 * 110.07658 * 119.22208 * 16 15 14 32 32 H 1.08998 * 110.07507 * 240.72021 * 16 15 14 33 33 H 1.07998 * 119.89740 * 180.32605 * 19 18 17 34 34 H 1.07998 * 119.89665 * 179.71690 * 20 19 18 35 35 H 1.07997 * 119.95057 * 179.97438 * 21 20 19 36 36 H 0.96696 * 114.00162 * 89.99682 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 1.8278 -0.4193 5.2204 10 1 1.8279 -2.5199 4.0082 11 1 3.8074 -1.1192 4.0077 12 7 2.0182 -0.6906 -1.1962 13 7 2.2519 0.0299 -2.3748 14 6 2.5681 -0.5965 -3.4661 15 6 3.1119 0.0347 -4.7251 16 6 3.3173 -1.1282 -5.7055 17 6 2.8857 -2.3789 -4.9782 18 6 2.4648 -2.0513 -3.6919 19 6 2.0104 -3.0654 -2.8370 20 6 1.9934 -4.3756 -3.2635 21 6 2.4185 -4.6976 -4.5390 22 6 2.8637 -3.7014 -5.3965 23 8 3.2792 -4.0225 -6.6499 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7088 1.1612 3.4844 28 1 2.1799 -1.6468 -1.1721 29 1 2.3945 0.7483 -5.1300 30 1 4.0613 0.5294 -4.5199 31 1 2.7031 -0.9816 -6.5938 32 1 4.3683 -1.2004 -5.9853 33 1 1.6771 -2.8195 -1.8396 34 1 1.6467 -5.1534 -2.5993 35 1 2.4038 -5.7259 -4.8688 36 1 4.2228 -4.2242 -6.7119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:32 Heat of formation + Delta-G solvation = 24.837833 kcal Electronic energy + Delta-G solvation = -18854.336255 eV Core-core repulsion = 15918.362722 eV Total energy + Delta-G solvation = -2935.973533 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23077 -37.62404 -35.91397 -35.25796 -33.47451 -31.05486 -29.54686 -28.87451 -27.38021 -25.30030 -24.29856 -22.61750 -21.29705 -20.19669 -19.69261 -18.27024 -16.51580 -15.99181 -15.68673 -15.50139 -15.07165 -14.97311 -14.35267 -13.94888 -13.49941 -12.73080 -12.52603 -12.26520 -12.14093 -12.05591 -11.92105 -11.66034 -11.29013 -11.23217 -11.02017 -10.77852 -10.65825 -10.51700 -10.26114 -10.13409 -9.54149 -9.04828 -8.77721 -8.50953 -8.49842 -6.76496 -6.16762 -4.25338 1.08429 1.33135 2.84052 3.23874 3.28700 3.30154 3.66325 3.89010 4.22046 4.33329 4.48179 4.88153 5.03865 5.15695 5.20317 5.32367 5.41210 5.49905 5.55324 5.87411 5.94759 6.04083 6.15797 6.16069 6.37731 6.50255 6.58323 6.73823 6.83535 6.94807 7.02324 7.11390 7.53983 7.61804 7.73977 7.81035 8.11121 8.25318 8.81142 9.25474 9.41487 10.89319 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.004831 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.300207 B = 5794.305743 C = 6388.678500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.292 3.708 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.619 5.619 13 N -0.177 5.177 14 C 0.009 3.991 15 C -0.045 4.045 16 C -0.067 4.067 17 C -0.116 4.116 18 C -0.047 4.047 19 C -0.125 4.125 20 C -0.099 4.099 21 C -0.152 4.152 22 C 0.114 3.886 23 O -0.499 6.499 24 H 0.025 0.975 25 H 0.092 0.908 26 H 0.012 0.988 27 H 0.266 0.734 28 H 0.374 0.626 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -7.542 -14.330 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.190 3.810 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.358 5.358 13 N 0.010 4.990 14 C -0.178 4.178 15 C -0.085 4.085 16 C -0.105 4.105 17 C -0.119 4.119 18 C -0.050 4.050 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.171 4.171 22 C 0.069 3.931 23 O -0.309 6.309 24 H 0.045 0.955 25 H 0.110 0.890 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.215 0.785 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.710 -6.218 -13.724 15.517 hybrid contribution 0.738 -1.866 0.851 2.180 sum 4.448 -8.084 -12.873 15.838 Atomic orbital electron populations 1.22234 0.99013 0.99225 1.00653 1.18622 0.90150 0.93839 0.78396 0.93794 1.21142 1.32434 1.13363 0.90108 0.92284 1.24847 0.94754 0.94979 0.98916 1.69879 1.35848 1.22458 1.24081 0.86475 0.79224 0.79595 0.81642 1.21029 1.20141 1.20129 1.49478 1.72176 1.08978 1.05204 1.74003 1.04210 1.27458 0.93357 1.22955 1.10177 0.89205 0.95476 1.20417 1.00997 0.96839 0.90212 1.20645 1.01459 0.90398 0.97970 1.20779 1.01543 0.94104 0.95486 1.20074 0.97190 0.93914 0.93842 1.21396 1.00722 0.92391 1.00061 1.20849 0.99220 0.96106 0.95539 1.21270 1.03135 0.98960 0.93760 1.17917 1.00380 0.90389 0.84375 1.84808 1.29791 1.90660 1.25615 0.95539 0.88985 0.96916 0.92453 0.78469 0.90016 0.89954 0.90026 0.90316 0.85331 0.85381 0.85498 0.75974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.29 37.16 0.35 -3.43 16 2 C 0.29 7.51 3.23 -69.08 -0.22 7.28 16 3 H 0.04 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.53 -14.27 8.74 -34.44 -0.30 -14.57 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.62 -14.06 5.87 -5.88 -0.03 -14.10 16 13 N -0.18 -3.77 11.58 35.20 0.41 -3.36 16 14 C 0.01 0.16 7.44 -79.53 -0.59 -0.43 16 15 C -0.05 -0.61 6.87 -27.50 -0.19 -0.79 16 16 C -0.07 -0.79 6.73 -27.50 -0.18 -0.97 16 17 C -0.12 -1.65 6.17 -103.93 -0.64 -2.29 16 18 C -0.05 -0.79 6.00 -104.97 -0.63 -1.41 16 19 C -0.12 -2.03 9.20 -39.00 -0.36 -2.39 16 20 C -0.10 -1.34 10.02 -39.74 -0.40 -1.74 16 21 C -0.15 -1.90 9.98 -39.38 -0.39 -2.29 16 22 C 0.11 1.48 6.70 -39.21 -0.26 1.22 16 23 O -0.50 -5.41 13.44 -19.43 -0.26 -5.67 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.37 7.99 4.63 -182.60 -0.85 7.15 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.13 2.26 5.28 -52.49 -0.28 1.98 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.39 2.30 9.06 45.56 0.41 2.72 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -30.18 302.98 -8.01 -38.20 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.37 Total: 8.73 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -3.92 Total: -20.09 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 1.00 Total: -41.37 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.26 Total: -5.67 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.18 -8.01 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.034 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds