Wall clock time and date at job start Mon Mar 30 2020 04:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47830 * 2 1 4 4 C 1.50698 * 109.46867 * 120.00385 * 2 1 3 5 5 H 1.07998 * 120.00158 * 119.99672 * 4 2 1 6 6 C 1.37879 * 120.00187 * 299.99510 * 4 2 1 7 7 N 1.31515 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00287 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46915 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47338 * 299.99939 * 8 6 4 11 11 H 1.48499 * 109.46942 * 60.00181 * 8 6 4 12 12 N 1.46500 * 109.46725 * 239.99892 * 2 1 3 13 13 N 1.40101 * 120.00089 * 90.00768 * 12 2 1 14 14 C 1.29744 * 119.99969 * 186.19163 * 13 12 2 15 15 C 1.50965 * 125.97554 * 192.98977 * 14 13 12 16 16 C 1.53481 * 105.31544 * 179.97438 * 15 14 13 17 17 C 1.50982 * 106.36103 * 0.02562 * 16 15 14 18 18 C 1.39246 * 109.65991 * 359.71787 * 17 16 15 19 19 C 1.40206 * 119.40545 * 179.62427 * 18 17 16 20 20 C 1.37800 * 120.20257 * 0.62191 * 19 18 17 21 21 C 1.38255 * 120.20810 * 359.70171 * 20 19 18 22 22 C 1.38723 * 130.46786 * 179.97438 * 17 16 15 23 23 O 1.35901 * 119.89964 * 359.97438 * 22 17 16 24 24 H 1.08994 * 109.47830 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47005 * 300.00172 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99518 * 1 2 3 27 27 H 0.97001 * 119.99827 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99827 * 269.99788 * 12 2 1 29 29 H 1.08996 * 110.27289 * 298.95807 * 15 14 13 30 30 H 1.09001 * 110.27414 * 60.94392 * 15 14 13 31 31 H 1.08995 * 110.07658 * 119.22208 * 16 15 14 32 32 H 1.08998 * 110.07507 * 240.72021 * 16 15 14 33 33 H 1.07998 * 119.89740 * 180.32605 * 19 18 17 34 34 H 1.07998 * 119.89665 * 179.71690 * 20 19 18 35 35 H 1.07997 * 119.95057 * 179.97438 * 21 20 19 36 36 H 0.96696 * 114.00162 * 89.99682 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 1.8278 -0.4193 5.2204 10 1 1.8279 -2.5199 4.0082 11 1 3.8074 -1.1192 4.0077 12 7 2.0182 -0.6906 -1.1962 13 7 2.2519 0.0299 -2.3748 14 6 2.5681 -0.5965 -3.4661 15 6 3.1119 0.0347 -4.7251 16 6 3.3173 -1.1282 -5.7055 17 6 2.8857 -2.3789 -4.9782 18 6 2.4648 -2.0513 -3.6919 19 6 2.0104 -3.0654 -2.8370 20 6 1.9934 -4.3756 -3.2635 21 6 2.4185 -4.6976 -4.5390 22 6 2.8637 -3.7014 -5.3965 23 8 3.2792 -4.0225 -6.6499 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7088 1.1612 3.4844 28 1 2.1799 -1.6468 -1.1721 29 1 2.3945 0.7483 -5.1300 30 1 4.0613 0.5294 -4.5199 31 1 2.7031 -0.9816 -6.5938 32 1 4.3683 -1.2004 -5.9853 33 1 1.6771 -2.8195 -1.8396 34 1 1.6467 -5.1534 -2.5993 35 1 2.4038 -5.7259 -4.8688 36 1 4.2228 -4.2242 -6.7119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:32 Heat of formation + Delta-G solvation = 4.734035 kcal Electronic energy + Delta-G solvation = -18855.208021 eV Core-core repulsion = 15918.362722 eV Total energy + Delta-G solvation = -2936.845299 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33032 -38.75536 -37.37750 -36.47536 -35.17449 -32.85656 -30.65930 -30.07077 -28.92470 -27.34539 -25.61405 -23.69822 -22.73355 -21.70777 -20.98910 -19.48733 -18.25085 -17.26482 -17.06920 -16.66661 -16.50931 -16.14962 -15.62930 -15.40548 -14.76331 -14.51095 -14.20240 -13.49349 -13.41514 -13.26937 -13.19702 -13.04641 -12.85445 -12.81706 -12.57563 -12.37421 -12.30264 -12.10482 -11.73622 -11.60832 -11.21069 -10.77225 -10.60567 -9.99822 -9.54624 -8.36269 -8.19677 -6.37768 -0.09878 0.26900 1.41095 1.43541 1.50924 1.55780 2.15168 2.44299 2.74138 3.08674 3.28729 3.39371 3.75510 3.98586 4.09113 4.27475 4.35964 4.40788 4.53268 4.67661 4.83035 4.85257 4.91601 5.02961 5.06516 5.14894 5.20644 5.26660 5.38148 5.41195 5.47855 5.57589 5.75622 5.81743 5.85960 6.16664 6.38006 6.80056 6.89492 7.33687 7.71832 8.85079 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.004831 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.300207 B = 5794.305743 C = 6388.678500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.302 3.698 3 H 0.003 0.997 4 C -0.549 4.549 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.971 3.029 9 H -0.279 1.279 10 H -0.267 1.267 11 H -0.272 1.272 12 N -0.641 5.641 13 N -0.237 5.237 14 C 0.037 3.963 15 C -0.050 4.050 16 C -0.061 4.061 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.143 4.143 20 C -0.103 4.103 21 C -0.138 4.138 22 C 0.118 3.882 23 O -0.499 6.499 24 H 0.028 0.972 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.268 0.732 28 H 0.376 0.624 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -9.702 -16.569 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.199 3.801 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.795 3.205 9 H -0.204 1.204 10 H -0.192 1.192 11 H -0.198 1.198 12 N -0.381 5.381 13 N -0.047 5.047 14 C -0.152 4.152 15 C -0.089 4.089 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.094 4.094 19 C -0.164 4.164 20 C -0.121 4.121 21 C -0.158 4.158 22 C 0.074 3.926 23 O -0.312 6.312 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.218 0.782 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.955 -8.387 -15.988 18.722 hybrid contribution 0.428 -1.327 1.221 1.853 sum 5.384 -9.714 -14.767 18.477 Atomic orbital electron populations 1.22043 0.98954 0.98912 0.99666 1.18188 0.90172 0.91872 0.79906 0.97899 1.21407 1.32756 1.13536 0.91119 0.92427 1.25706 0.94753 0.95610 1.01856 1.70006 1.36630 1.23628 1.24835 0.85417 0.78614 0.78678 0.77750 1.20393 1.19225 1.19769 1.48933 1.74991 1.08709 1.05480 1.73995 1.08576 1.28133 0.93961 1.23968 1.04929 0.90874 0.95444 1.20701 1.01750 0.97970 0.88474 1.20732 1.03596 0.88016 0.97456 1.21100 1.00260 0.95681 0.94464 1.20197 1.00218 0.93395 0.95635 1.21424 1.01713 0.93936 0.99317 1.21096 0.99025 0.95305 0.96680 1.21653 1.00820 1.00478 0.92825 1.17959 0.99723 0.89901 0.85045 1.84761 1.32049 1.90446 1.23944 0.95327 0.90927 0.96676 0.92282 0.78151 0.88695 0.88392 0.88246 0.87333 0.87685 0.83328 0.82414 0.73084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.16 9.29 71.98 0.67 -6.49 16 2 C 0.30 16.55 3.23 44.24 0.14 16.69 16 3 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 4 C -0.55 -30.79 8.74 25.60 0.22 -30.56 16 5 H 0.06 3.15 7.79 -2.91 -0.02 3.13 16 6 C 0.02 1.17 5.30 84.66 0.45 1.62 16 7 N -0.91 -52.35 11.32 21.45 0.24 -52.10 16 8 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.64 -30.98 5.87 -172.53 -1.01 -31.99 16 13 N -0.24 -10.55 11.58 -42.55 -0.49 -11.05 16 14 C 0.04 1.34 7.44 45.42 0.34 1.68 16 15 C -0.05 -1.23 6.87 30.09 0.21 -1.02 16 16 C -0.06 -1.20 6.73 30.10 0.20 -0.99 16 17 C -0.11 -2.87 6.17 -19.42 -0.12 -2.99 16 18 C -0.09 -3.01 6.00 -20.09 -0.12 -3.13 16 19 C -0.14 -4.70 9.20 22.64 0.21 -4.49 16 20 C -0.10 -2.62 10.02 22.17 0.22 -2.40 16 21 C -0.14 -2.97 9.98 22.40 0.22 -2.75 16 22 C 0.12 2.63 6.70 22.51 0.15 2.78 16 23 O -0.50 -8.36 13.44 -92.43 -1.24 -9.60 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 4.06 6.07 -2.39 -0.01 4.04 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.38 17.18 4.63 -213.32 -0.99 16.19 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 3.92 5.28 -2.91 -0.02 3.91 16 34 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.41 2.74 9.06 -74.06 -0.67 2.07 16 Total: -1.00 -68.46 302.98 1.77 -66.68 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.54 Total: 25.10 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 2.80 Total: -32.05 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -1.26 Total: -95.15 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.24 Total: -9.60 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -68.46 1.77 -66.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.416 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds