Wall clock time and date at job start Mon Mar 30 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00351 * 2 1 4 4 H 1.48497 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46944 * 300.00611 * 3 2 1 6 6 H 1.48501 * 109.47017 * 60.00244 * 3 2 1 7 7 C 1.39941 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00370 * 171.95487 * 7 2 1 9 9 C 1.41439 * 119.99458 * 351.94732 * 7 2 1 10 10 C 1.40786 * 120.17416 * 148.85245 * 9 7 2 11 11 C 1.37713 * 120.04079 * 179.74644 * 10 9 7 12 12 C 1.38373 * 120.41255 * 359.97438 * 11 10 9 13 13 C 1.39880 * 120.35622 * 359.97438 * 12 11 10 14 14 C 1.47890 * 120.02722 * 180.02562 * 13 12 11 15 15 O 1.21548 * 120.00029 * 179.97438 * 14 13 12 16 16 N 1.34775 * 119.99452 * 0.02562 * 14 13 12 17 17 N 1.36605 * 119.99530 * 184.39244 * 16 14 13 18 18 C 1.48540 * 110.99656 * 116.98693 * 17 16 14 19 19 C 1.54937 * 103.22410 * 159.71935 * 18 17 16 20 20 C 1.54600 * 102.92342 * 322.58527 * 19 18 17 21 21 C 1.47902 * 111.00052 * 234.38204 * 17 16 14 22 22 C 1.39038 * 119.95233 * 0.06173 * 13 12 11 23 23 H 0.97002 * 119.99717 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.98127 * 359.72831 * 10 9 7 25 25 H 1.08000 * 119.79787 * 180.02562 * 11 10 9 26 26 H 1.08000 * 119.82522 * 179.97438 * 12 11 10 27 27 H 0.97002 * 120.00691 * 4.39020 * 16 14 13 28 28 H 1.08992 * 110.66822 * 278.15292 * 18 17 16 29 29 H 1.08999 * 110.66448 * 41.28957 * 18 17 16 30 30 H 1.09004 * 110.72336 * 204.23047 * 19 18 17 31 31 H 1.08997 * 110.72533 * 80.94690 * 19 18 17 32 32 H 1.08995 * 110.31104 * 263.03765 * 20 19 18 33 33 H 1.09003 * 110.30610 * 140.87339 * 20 19 18 34 34 H 1.09004 * 109.91640 * 333.51385 * 21 17 16 35 35 H 1.08998 * 109.91357 * 94.60466 * 21 17 16 36 36 H 1.07997 * 120.20473 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0799 -1.2165 -0.1314 9 6 1.3112 -2.4308 0.1705 10 6 1.7838 -3.6078 -0.4404 11 6 1.1061 -4.7942 -0.2678 12 6 -0.0407 -4.8397 0.5052 13 6 -0.5247 -3.6807 1.1209 14 6 -1.7507 -3.7377 1.9459 15 8 -2.1706 -2.7304 2.4810 16 7 -2.4018 -4.9070 2.1052 17 7 -3.5821 -4.9434 2.7920 18 6 -4.6970 -5.3774 1.9116 19 6 -5.7737 -5.8608 2.9154 20 6 -4.9347 -6.5418 4.0211 21 6 -3.5263 -5.9331 3.8897 22 6 0.1473 -2.4747 0.9560 23 1 -0.4850 0.8401 0.0004 24 1 2.6783 -3.5804 -1.0451 25 1 1.4724 -5.6948 -0.7379 26 1 -0.5649 -5.7751 0.6339 27 1 -2.0324 -5.7227 1.7322 28 1 -5.0694 -4.5402 1.3215 29 1 -4.3800 -6.1950 1.2642 30 1 -6.4459 -6.5780 2.4444 31 1 -6.3312 -5.0159 3.3196 32 1 -4.8980 -7.6190 3.8588 33 1 -5.3524 -6.3205 5.0033 34 1 -2.8051 -6.7142 3.6490 35 1 -3.2432 -5.4404 4.8198 36 1 -0.2230 -1.5773 1.4291 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773392353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:19 Heat of formation + Delta-G solvation = -5.656820 kcal Electronic energy + Delta-G solvation = -18866.735011 eV Core-core repulsion = 15929.439131 eV Total energy + Delta-G solvation = -2937.295880 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27111 -39.63109 -38.49286 -35.63370 -35.10941 -32.25106 -31.30041 -29.92436 -29.65720 -27.16170 -24.55221 -22.93654 -22.44865 -21.85480 -21.37534 -19.63517 -18.66202 -17.71296 -17.05100 -16.65246 -16.41016 -15.94194 -15.76388 -15.06215 -14.87836 -14.64811 -14.29805 -14.07851 -13.78710 -13.48806 -13.41273 -12.93153 -12.81851 -12.53276 -12.33727 -12.21412 -12.18317 -11.88087 -11.50840 -11.48975 -11.13646 -10.81268 -10.31907 -9.85696 -9.48815 -9.34271 -8.58890 -6.41573 0.35491 0.99951 1.37832 1.46228 1.53811 1.75886 2.10921 2.21948 2.82216 3.30766 3.66164 3.76545 3.83248 4.05325 4.06313 4.21266 4.39869 4.48859 4.55115 4.64655 4.81204 4.88077 4.89650 4.95729 5.08598 5.12013 5.16154 5.22195 5.32043 5.50597 5.66891 5.83620 5.88296 6.04716 6.19321 6.27018 6.50058 6.65309 6.90087 6.94066 7.58501 8.37659 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.004749 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.611914 B = 5894.070768 C = 6526.197749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.025 3.975 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.084 0.916 9 C 0.067 3.933 10 C -0.206 4.206 11 C -0.098 4.098 12 C -0.188 4.188 13 C -0.137 4.137 14 C 0.577 3.423 15 O -0.570 6.570 16 N -0.572 5.572 17 N -0.308 5.308 18 C 0.009 3.991 19 C -0.114 4.114 20 C -0.119 4.119 21 C 0.011 3.989 22 C -0.119 4.119 23 H 0.284 0.716 24 H 0.112 0.888 25 H 0.142 0.858 26 H 0.136 0.864 27 H 0.394 0.606 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 -13.772 3.262 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.530 4.530 8 H 0.102 0.898 9 C 0.065 3.935 10 C -0.225 4.225 11 C -0.116 4.116 12 C -0.208 4.208 13 C -0.142 4.142 14 C 0.367 3.633 15 O -0.448 6.448 16 N -0.319 5.319 17 N -0.125 5.125 18 C -0.118 4.118 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.116 4.116 22 C -0.140 4.140 23 H 0.094 0.906 24 H 0.130 0.870 25 H 0.160 0.840 26 H 0.153 0.847 27 H 0.237 0.763 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.700 -12.392 3.812 15.079 hybrid contribution 0.513 0.067 -0.471 0.699 sum -7.187 -12.325 3.341 14.653 Atomic orbital electron populations 1.69880 1.09108 1.30221 1.37488 1.26847 0.95538 1.04905 0.91510 0.85086 0.79487 0.76056 0.78627 1.17374 1.19029 1.19694 1.19882 0.95756 0.91141 1.46194 0.89769 1.17955 0.91978 0.94000 0.89570 1.21522 1.03098 0.93712 1.04207 1.20951 0.94994 0.97479 0.98198 1.20883 0.99749 0.95953 1.04214 1.19694 0.95915 0.96076 1.02491 1.18662 0.83114 0.82234 0.79257 1.90659 1.68516 1.36110 1.49497 1.45237 1.20149 1.09909 1.56584 1.65711 0.93224 1.47675 1.05922 1.23845 0.91621 0.99825 0.96511 1.22462 0.96541 1.01026 0.95266 1.22388 0.92235 1.00779 1.00401 1.23459 0.99863 0.93639 0.94672 1.21472 0.97651 0.95690 0.99182 0.90571 0.86979 0.84006 0.84669 0.76296 0.91358 0.91145 0.87728 0.91041 0.88698 0.89566 0.91420 0.90890 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.15 10.88 21.83 0.24 -47.91 16 2 C 0.02 1.32 5.28 85.26 0.45 1.77 16 3 Si 0.99 40.50 29.57 68.60 2.03 42.53 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.50 -27.49 9.05 23.47 0.21 -27.27 16 8 H 0.08 4.36 7.86 -2.92 -0.02 4.33 16 9 C 0.07 3.67 5.53 -21.32 -0.12 3.55 16 10 C -0.21 -9.50 9.78 22.77 0.22 -9.28 16 11 C -0.10 -3.81 10.01 22.18 0.22 -3.59 16 12 C -0.19 -7.32 9.55 22.70 0.22 -7.10 16 13 C -0.14 -6.59 5.87 -20.13 -0.12 -6.71 16 14 C 0.58 26.80 7.88 86.80 0.68 27.48 16 15 O -0.57 -31.87 16.66 -3.87 -0.06 -31.93 16 16 N -0.57 -19.66 4.70 -175.57 -0.82 -20.49 16 17 N -0.31 -9.60 5.15 -502.19 -2.59 -12.18 16 18 C 0.01 0.22 6.85 86.65 0.59 0.82 16 19 C -0.11 -1.90 7.06 31.80 0.22 -1.68 16 20 C -0.12 -1.81 6.93 31.47 0.22 -1.59 16 21 C 0.01 0.25 6.92 86.45 0.60 0.85 16 22 C -0.12 -6.73 8.19 23.01 0.19 -6.54 16 23 H 0.28 15.04 8.30 -92.71 -0.77 14.27 16 24 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 25 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 26 H 0.14 3.93 6.39 -2.91 -0.02 3.91 16 27 H 0.39 10.75 6.74 -215.49 -1.45 9.29 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.33 7.90 -2.38 -0.02 1.31 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 6.22 5.90 -2.91 -0.02 6.20 16 Total: -1.00 -72.47 303.36 2.02 -70.44 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.36 Total: 28.84 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 3.60 Total: -29.29 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.18 Total: -80.58 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.06 Total: -31.93 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -72.47 2.02 -70.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773392353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.785 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds