Wall clock time and date at job start Mon Mar 30 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46891 * 2 1 4 4 C 1.50705 * 109.47124 * 240.00333 * 2 1 3 5 5 H 1.08004 * 119.99540 * 240.00045 * 4 2 1 6 6 C 1.37871 * 119.99934 * 60.00182 * 4 2 1 7 7 N 1.31510 * 120.00542 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99777 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47404 * 59.99432 * 8 6 4 10 10 H 1.48496 * 109.46976 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46775 * 299.99304 * 8 6 4 12 12 N 1.46499 * 109.47121 * 120.00040 * 2 1 3 13 13 N 1.40104 * 120.00078 * 269.72443 * 12 2 1 14 14 C 1.29743 * 120.00013 * 186.18194 * 13 12 2 15 15 C 1.50945 * 125.97708 * 193.56139 * 14 13 12 16 16 C 1.53469 * 105.33457 * 179.97438 * 15 14 13 17 17 C 1.50998 * 106.36714 * 0.02562 * 16 15 14 18 18 C 1.38175 * 130.39526 * 180.02562 * 17 16 15 19 19 C 1.38742 * 120.27702 * 179.31739 * 18 17 16 20 20 O 1.35875 * 119.97399 * 180.17611 * 19 18 17 21 21 C 1.38888 * 120.04163 * 0.57625 * 19 18 17 22 22 C 1.37628 * 120.08546 * 359.62309 * 21 19 18 23 23 C 1.39326 * 109.63763 * 359.75976 * 17 16 15 24 24 H 1.09001 * 109.46841 * 299.99873 * 1 2 3 25 25 H 1.08995 * 109.47205 * 59.99874 * 1 2 3 26 26 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00731 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99763 * 90.00381 * 12 2 1 29 29 H 1.08997 * 110.27480 * 298.93895 * 15 14 13 30 30 H 1.09003 * 110.26765 * 60.90660 * 15 14 13 31 31 H 1.08996 * 110.07749 * 119.23424 * 16 15 14 32 32 H 1.09005 * 110.07271 * 240.77637 * 16 15 14 33 33 H 1.07993 * 119.86662 * 359.97359 * 18 17 16 34 34 H 0.96693 * 114.00368 * 270.39683 * 20 19 18 35 35 H 1.08003 * 119.95318 * 179.59711 * 21 19 18 36 36 H 1.08001 * 119.91803 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8261 -0.4204 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1962 13 7 2.2574 0.0309 2.3731 14 6 2.8021 -0.5556 3.3942 15 6 2.8608 -0.0127 4.8014 16 6 3.6020 -1.0801 5.6177 17 6 3.9415 -2.1925 4.6547 18 6 4.6027 -3.3876 4.8642 19 6 4.7908 -4.2761 3.8154 20 8 5.4387 -5.4512 4.0291 21 6 4.3247 -3.9615 2.5454 22 6 3.6686 -2.7716 2.3265 23 6 3.4681 -1.8725 3.3840 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7082 1.1610 -3.4844 28 1 2.1801 -1.6468 1.1721 29 1 3.4117 0.9276 4.8208 30 1 1.8537 0.1324 5.1925 31 1 4.5146 -0.6607 6.0411 32 1 2.9586 -1.4566 6.4130 33 1 4.9652 -3.6359 5.8507 34 1 6.3963 -5.4006 3.9051 35 1 4.4777 -4.6513 1.7286 36 1 3.3077 -2.5295 1.3378 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780237844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:34 Heat of formation + Delta-G solvation = 24.128751 kcal Electronic energy + Delta-G solvation = -18795.267857 eV Core-core repulsion = 15859.263576 eV Total energy + Delta-G solvation = -2936.004281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15206 -37.94276 -36.00391 -34.65207 -33.50808 -31.26291 -29.97244 -28.49006 -27.37680 -25.28260 -24.20532 -22.74886 -21.29468 -20.23237 -19.51248 -17.92395 -17.17066 -16.07786 -15.71819 -15.37819 -15.07492 -14.93202 -14.08208 -13.91198 -13.13640 -12.86976 -12.62392 -12.47278 -12.18640 -12.04260 -12.00496 -11.61452 -11.51471 -11.17733 -11.04033 -10.83354 -10.48476 -10.31705 -10.22914 -10.17385 -9.48107 -9.06579 -8.78093 -8.62857 -8.45572 -6.72796 -6.16025 -4.25561 1.03635 1.40981 2.82401 3.23572 3.28406 3.29642 3.67195 3.86864 4.15893 4.33722 4.60530 4.88404 5.01917 5.15746 5.20520 5.30622 5.37256 5.51087 5.56388 5.81753 5.94463 6.05108 6.13455 6.15788 6.40626 6.51870 6.56160 6.76308 6.82851 6.99927 7.06826 7.13302 7.54308 7.62595 7.74705 7.83637 8.10815 8.26267 8.80792 9.26834 9.41481 10.89182 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.005409 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.189616 B = 5174.934328 C = 6310.452107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.293 3.707 3 H 0.042 0.958 4 C -0.534 4.534 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.620 5.620 13 N -0.180 5.180 14 C 0.012 3.988 15 C -0.045 4.045 16 C -0.074 4.074 17 C -0.076 4.076 18 C -0.132 4.132 19 C 0.095 3.905 20 O -0.500 6.500 21 C -0.138 4.138 22 C -0.100 4.100 23 C -0.070 4.070 24 H 0.014 0.986 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.373 0.627 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.386 0.614 35 H 0.129 0.871 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -6.092 13.912 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.191 3.809 3 H 0.060 0.940 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.360 5.360 13 N 0.007 4.993 14 C -0.176 4.176 15 C -0.084 4.084 16 C -0.111 4.111 17 C -0.079 4.079 18 C -0.150 4.150 19 C 0.049 3.951 20 O -0.309 6.309 21 C -0.156 4.156 22 C -0.121 4.121 23 C -0.073 4.073 24 H 0.033 0.967 25 H 0.109 0.891 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.214 0.786 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.241 0.759 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.845 -5.122 13.353 15.450 hybrid contribution 1.246 -1.562 -1.027 2.247 sum 7.090 -6.685 12.326 15.713 Atomic orbital electron populations 1.22172 0.98685 0.99265 1.00622 1.18604 0.90446 0.93580 0.78311 0.94009 1.21196 1.32502 1.13327 0.90325 0.92415 1.24841 0.94743 0.94953 0.98906 1.69872 1.35787 1.22446 1.24078 0.86500 0.79191 0.79675 0.81730 1.20105 1.20995 1.20166 1.49470 1.70300 1.07784 1.08407 1.74005 1.07406 1.24529 0.93370 1.22938 1.05855 0.93260 0.95540 1.20396 1.01168 0.98064 0.88787 1.20768 1.00566 0.92985 0.96825 1.20354 0.97633 0.94752 0.95172 1.20690 1.02217 0.92941 0.99195 1.18290 0.98592 0.85904 0.92289 1.84815 1.24148 1.29714 1.92243 1.21221 1.00769 0.97118 0.96503 1.21271 0.99002 0.93106 0.98728 1.20202 0.98506 0.94868 0.93759 0.96654 0.89127 0.95513 0.92447 0.78574 0.89999 0.89974 0.90010 0.89964 0.85729 0.75881 0.85276 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.29 37.16 0.35 -3.33 16 2 C 0.29 7.53 3.23 -69.08 -0.22 7.31 16 3 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.53 -14.38 8.74 -34.44 -0.30 -14.68 16 5 H 0.06 1.51 7.79 -52.48 -0.41 1.11 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.88 -24.56 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.62 -14.12 5.87 -5.88 -0.03 -14.15 16 13 N -0.18 -3.81 11.58 35.19 0.41 -3.40 16 14 C 0.01 0.20 7.44 -79.54 -0.59 -0.39 16 15 C -0.04 -0.58 6.86 -27.52 -0.19 -0.77 16 16 C -0.07 -0.80 6.79 -27.49 -0.19 -0.99 16 17 C -0.08 -1.05 6.20 -104.10 -0.65 -1.69 16 18 C -0.13 -1.67 9.97 -39.42 -0.39 -2.06 16 19 C 0.09 1.26 6.71 -39.15 -0.26 1.00 16 20 O -0.50 -5.67 13.50 -19.35 -0.26 -5.93 16 21 C -0.14 -2.00 9.96 -39.56 -0.39 -2.40 16 22 C -0.10 -1.68 9.19 -39.05 -0.36 -2.03 16 23 C -0.07 -1.17 6.00 -104.93 -0.63 -1.80 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.37 8.03 4.63 -182.59 -0.85 7.19 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.39 2.46 9.06 45.56 0.41 2.87 16 35 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.13 2.40 5.29 -52.49 -0.28 2.13 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -30.29 303.07 -8.01 -38.31 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.37 Total: 8.92 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.92 Total: -20.08 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.00 Total: -41.49 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.26 Total: -5.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.29 -8.01 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780237844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.434 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds