Wall clock time and date at job start Mon Mar 30 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46891 * 2 1 4 4 C 1.50705 * 109.47124 * 240.00333 * 2 1 3 5 5 H 1.08004 * 119.99540 * 240.00045 * 4 2 1 6 6 C 1.37871 * 119.99934 * 60.00182 * 4 2 1 7 7 N 1.31510 * 120.00542 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99777 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47404 * 59.99432 * 8 6 4 10 10 H 1.48496 * 109.46976 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46775 * 299.99304 * 8 6 4 12 12 N 1.46499 * 109.47121 * 120.00040 * 2 1 3 13 13 N 1.40104 * 120.00078 * 269.72443 * 12 2 1 14 14 C 1.29743 * 120.00013 * 186.18194 * 13 12 2 15 15 C 1.50945 * 125.97708 * 193.56139 * 14 13 12 16 16 C 1.53469 * 105.33457 * 179.97438 * 15 14 13 17 17 C 1.50998 * 106.36714 * 0.02562 * 16 15 14 18 18 C 1.38175 * 130.39526 * 180.02562 * 17 16 15 19 19 C 1.38742 * 120.27702 * 179.31739 * 18 17 16 20 20 O 1.35875 * 119.97399 * 180.17611 * 19 18 17 21 21 C 1.38888 * 120.04163 * 0.57625 * 19 18 17 22 22 C 1.37628 * 120.08546 * 359.62309 * 21 19 18 23 23 C 1.39326 * 109.63763 * 359.75976 * 17 16 15 24 24 H 1.09001 * 109.46841 * 299.99873 * 1 2 3 25 25 H 1.08995 * 109.47205 * 59.99874 * 1 2 3 26 26 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00731 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99763 * 90.00381 * 12 2 1 29 29 H 1.08997 * 110.27480 * 298.93895 * 15 14 13 30 30 H 1.09003 * 110.26765 * 60.90660 * 15 14 13 31 31 H 1.08996 * 110.07749 * 119.23424 * 16 15 14 32 32 H 1.09005 * 110.07271 * 240.77637 * 16 15 14 33 33 H 1.07993 * 119.86662 * 359.97359 * 18 17 16 34 34 H 0.96693 * 114.00368 * 270.39683 * 20 19 18 35 35 H 1.08003 * 119.95318 * 179.59711 * 21 19 18 36 36 H 1.08001 * 119.91803 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8261 -0.4204 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1962 13 7 2.2574 0.0309 2.3731 14 6 2.8021 -0.5556 3.3942 15 6 2.8608 -0.0127 4.8014 16 6 3.6020 -1.0801 5.6177 17 6 3.9415 -2.1925 4.6547 18 6 4.6027 -3.3876 4.8642 19 6 4.7908 -4.2761 3.8154 20 8 5.4387 -5.4512 4.0291 21 6 4.3247 -3.9615 2.5454 22 6 3.6686 -2.7716 2.3265 23 6 3.4681 -1.8725 3.3840 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7082 1.1610 -3.4844 28 1 2.1801 -1.6468 1.1721 29 1 3.4117 0.9276 4.8208 30 1 1.8537 0.1324 5.1925 31 1 4.5146 -0.6607 6.0411 32 1 2.9586 -1.4566 6.4130 33 1 4.9652 -3.6359 5.8507 34 1 6.3963 -5.4006 3.9051 35 1 4.4777 -4.6513 1.7286 36 1 3.3077 -2.5295 1.3378 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780237844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:33 Heat of formation + Delta-G solvation = 3.777769 kcal Electronic energy + Delta-G solvation = -18796.150342 eV Core-core repulsion = 15859.263576 eV Total energy + Delta-G solvation = -2936.886766 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26968 -39.02848 -37.56804 -35.95284 -35.08706 -32.98573 -31.25135 -29.60904 -28.94832 -27.33761 -25.47730 -23.87651 -22.67594 -21.78220 -20.88695 -18.88888 -18.74978 -17.78518 -17.07907 -16.69161 -16.37809 -15.99732 -15.59671 -15.28430 -14.55741 -14.33203 -14.25475 -13.88699 -13.51109 -13.22015 -13.21027 -13.00956 -12.90309 -12.84121 -12.54312 -12.48699 -12.29459 -12.09817 -11.65608 -11.48551 -11.16970 -10.80817 -10.59054 -9.86600 -9.78554 -8.34438 -8.16270 -6.38845 -0.14124 0.30893 1.39185 1.41135 1.49191 1.54117 2.15893 2.43472 2.72590 3.07245 3.15210 3.50690 3.77282 3.95850 4.17006 4.25791 4.37506 4.43459 4.46370 4.70581 4.78047 4.92393 4.97832 5.04923 5.09145 5.15537 5.25464 5.26751 5.36226 5.42348 5.47583 5.57890 5.77699 5.80526 5.87332 6.16980 6.37922 6.79665 6.84334 7.32729 7.73844 8.83852 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.005409 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.189616 B = 5174.934328 C = 6310.452107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.303 3.697 3 H 0.001 0.999 4 C -0.553 4.553 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.273 1.273 12 N -0.643 5.643 13 N -0.241 5.241 14 C 0.041 3.959 15 C -0.050 4.050 16 C -0.067 4.067 17 C -0.060 4.060 18 C -0.131 4.131 19 C 0.114 3.886 20 O -0.503 6.503 21 C -0.154 4.154 22 C -0.113 4.113 23 C -0.120 4.120 24 H 0.020 0.980 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.268 0.732 28 H 0.374 0.626 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.160 0.840 34 H 0.412 0.588 35 H 0.137 0.863 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.686 -7.759 16.545 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.199 3.801 3 H 0.019 0.981 4 C -0.592 4.592 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.198 1.198 12 N -0.384 5.384 13 N -0.050 5.050 14 C -0.149 4.149 15 C -0.089 4.089 16 C -0.104 4.104 17 C -0.062 4.062 18 C -0.149 4.149 19 C 0.068 3.932 20 O -0.316 6.316 21 C -0.173 4.173 22 C -0.134 4.134 23 C -0.123 4.123 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.216 0.784 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.178 0.822 34 H 0.271 0.729 35 H 0.155 0.845 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.558 -6.796 16.002 18.957 hybrid contribution 0.896 -1.187 -1.581 2.170 sum 8.454 -7.983 14.421 18.524 Atomic orbital electron populations 1.21984 0.98543 0.98911 0.99817 1.18169 0.90549 0.91550 0.79796 0.98145 1.21475 1.32801 1.13498 0.91397 0.92627 1.25687 0.94774 0.95607 1.01800 1.69997 1.36543 1.23571 1.24826 0.85460 0.78587 0.78728 0.77952 1.19315 1.20239 1.19833 1.48932 1.73375 1.07526 1.08520 1.73994 1.11857 1.25391 0.93806 1.24021 1.01078 0.93462 0.96302 1.20715 1.02864 0.99520 0.85827 1.20899 1.02184 0.91067 0.96234 1.20752 0.95587 0.95592 0.94301 1.21020 1.01391 0.92032 1.00474 1.18377 0.97140 0.86005 0.91664 1.84752 1.26270 1.28599 1.91997 1.21346 1.01295 0.96656 0.97962 1.21217 0.99843 0.94443 0.97944 1.20372 1.01216 0.95219 0.95480 0.96065 0.91077 0.95443 0.92261 0.78405 0.88451 0.88457 0.86867 0.87026 0.82197 0.72870 0.84491 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.29 71.98 0.67 -6.32 16 2 C 0.30 16.67 3.23 44.25 0.14 16.81 16 3 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 4 C -0.55 -31.26 8.74 25.60 0.22 -31.03 16 5 H 0.06 3.07 7.79 -2.91 -0.02 3.05 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -52.48 11.32 21.44 0.24 -52.24 16 8 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.64 -31.31 5.87 -172.51 -1.01 -32.32 16 13 N -0.24 -10.67 11.58 -42.57 -0.49 -11.16 16 14 C 0.04 1.44 7.44 45.41 0.34 1.78 16 15 C -0.05 -1.15 6.86 30.08 0.21 -0.95 16 16 C -0.07 -1.13 6.79 30.10 0.20 -0.92 16 17 C -0.06 -1.43 6.20 -19.52 -0.12 -1.55 16 18 C -0.13 -2.75 9.97 22.38 0.22 -2.52 16 19 C 0.11 2.68 6.71 22.55 0.15 2.83 16 20 O -0.50 -9.44 13.50 -92.15 -1.24 -10.69 16 21 C -0.15 -4.36 9.96 22.28 0.22 -4.14 16 22 C -0.11 -3.89 9.19 22.61 0.21 -3.68 16 23 C -0.12 -3.92 6.00 -20.06 -0.12 -4.04 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.37 17.37 4.63 -213.31 -0.99 16.38 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.41 3.50 9.06 -74.06 -0.67 2.83 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.11 4.14 5.29 -2.91 -0.02 4.13 16 Total: -1.00 -69.54 303.07 1.77 -67.77 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.55 Total: 25.30 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 2.80 Total: -32.07 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -1.26 Total: -95.73 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.24 Total: -10.69 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.54 1.77 -67.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780237844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.551 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds