Wall clock time and date at job start Mon Mar 30 2020 04:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47187 * 2 1 4 4 C 1.50687 * 109.47225 * 120.00328 * 2 1 3 5 5 H 1.08004 * 120.00192 * 120.00259 * 4 2 1 6 6 C 1.37877 * 120.00399 * 299.99684 * 4 2 1 7 7 N 1.31526 * 119.99714 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00393 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46775 * 180.02562 * 8 6 4 10 10 H 1.48492 * 109.47239 * 299.99971 * 8 6 4 11 11 H 1.48498 * 109.46937 * 60.00649 * 8 6 4 12 12 N 1.46498 * 109.46902 * 240.00631 * 2 1 3 13 13 N 1.40103 * 120.00624 * 89.99916 * 12 2 1 14 14 C 1.29744 * 120.00120 * 186.18890 * 13 12 2 15 15 C 1.50951 * 125.97014 * 193.43467 * 14 13 12 16 16 C 1.53481 * 105.33116 * 179.97438 * 15 14 13 17 17 C 1.50998 * 106.35992 * 0.02562 * 16 15 14 18 18 C 1.38188 * 130.39039 * 180.02562 * 17 16 15 19 19 C 1.38732 * 120.27694 * 179.31118 * 18 17 16 20 20 O 1.35885 * 119.97594 * 180.17752 * 19 18 17 21 21 C 1.38887 * 120.04610 * 0.57041 * 19 18 17 22 22 C 1.37625 * 120.08243 * 359.62521 * 21 19 18 23 23 C 1.39322 * 109.64564 * 359.75297 * 17 16 15 24 24 H 1.08999 * 109.47495 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47275 * 300.00142 * 1 2 3 26 26 H 1.09001 * 109.47270 * 59.99607 * 1 2 3 27 27 H 0.96996 * 119.99840 * 179.97438 * 7 6 4 28 28 H 0.97005 * 120.00111 * 269.99685 * 12 2 1 29 29 H 1.09004 * 110.27406 * 298.92336 * 15 14 13 30 30 H 1.08995 * 110.27696 * 60.90275 * 15 14 13 31 31 H 1.09003 * 110.07425 * 119.21892 * 16 15 14 32 32 H 1.08996 * 110.07450 * 240.77021 * 16 15 14 33 33 H 1.08003 * 119.85897 * 359.96499 * 18 17 16 34 34 H 0.96699 * 113.99524 * 270.39612 * 20 19 18 35 35 H 1.07994 * 119.95643 * 179.59852 * 21 19 18 36 36 H 1.08004 * 119.91912 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 1.8260 -0.4208 5.2203 10 1 1.8258 -2.5203 4.0076 11 1 3.8064 -1.1210 4.0080 12 7 2.0182 -0.6905 -1.1962 13 7 2.2517 0.0301 -2.3749 14 6 2.5681 -0.5962 -3.4662 15 6 3.1205 0.0339 -4.7218 16 6 3.3224 -1.1281 -5.7040 17 6 2.8802 -2.3778 -4.9810 18 6 2.8532 -3.6937 -5.4021 19 6 2.4121 -4.6929 -4.5466 20 8 2.3915 -5.9853 -4.9658 21 6 1.9840 -4.3721 -3.2649 22 6 2.0036 -3.0638 -2.8383 23 6 2.4556 -2.0497 -3.6953 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7082 1.1607 3.4844 28 1 2.1799 -1.6467 -1.1723 29 1 2.4089 0.7525 -5.1284 30 1 4.0718 0.5228 -4.5120 31 1 2.7124 -0.9756 -6.5943 32 1 4.3741 -1.2068 -5.9793 33 1 3.1867 -3.9467 -6.3977 34 1 1.5631 -6.2480 -5.3897 35 1 1.6349 -5.1502 -2.6024 36 1 1.6697 -2.8173 -1.8412 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780237846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:36 Heat of formation + Delta-G solvation = 24.265793 kcal Electronic energy + Delta-G solvation = -18782.622457 eV Core-core repulsion = 15846.624119 eV Total energy + Delta-G solvation = -2935.998338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16375 -37.95263 -36.01440 -34.66035 -33.51221 -31.26009 -29.98833 -28.49887 -27.39058 -25.29053 -24.20985 -22.76586 -21.32203 -20.20889 -19.52510 -17.93672 -17.18101 -16.07953 -15.72234 -15.38645 -15.11518 -14.91008 -14.07542 -13.89391 -13.23413 -12.90978 -12.64007 -12.43929 -12.18278 -12.01408 -11.93402 -11.66407 -11.53010 -11.21837 -11.01470 -10.78112 -10.49650 -10.47755 -10.25138 -10.09521 -9.52404 -9.02891 -8.78930 -8.64095 -8.46065 -6.72713 -6.16238 -4.24708 1.02474 1.39329 2.81506 3.24798 3.29386 3.31212 3.66485 3.86595 4.14558 4.34288 4.59178 4.87826 5.00474 5.16288 5.19828 5.30438 5.35633 5.50443 5.54032 5.81178 5.93622 6.04185 6.13425 6.14845 6.39268 6.50412 6.54938 6.73541 6.81185 6.94315 7.03337 7.11840 7.54572 7.61247 7.74441 7.81402 8.11947 8.25984 8.81945 9.26594 9.42178 10.89811 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.005076 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.284584 B = 5514.806389 C = 6345.402923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.292 3.708 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.619 5.619 13 N -0.180 5.180 14 C 0.011 3.989 15 C -0.045 4.045 16 C -0.074 4.074 17 C -0.076 4.076 18 C -0.131 4.131 19 C 0.094 3.906 20 O -0.499 6.499 21 C -0.138 4.138 22 C -0.101 4.101 23 C -0.070 4.070 24 H 0.025 0.975 25 H 0.092 0.908 26 H 0.012 0.988 27 H 0.265 0.735 28 H 0.373 0.627 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.386 0.614 35 H 0.129 0.871 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -7.057 -15.557 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.190 3.810 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.359 5.359 13 N 0.007 4.993 14 C -0.177 4.177 15 C -0.084 4.084 16 C -0.112 4.112 17 C -0.079 4.079 18 C -0.150 4.150 19 C 0.049 3.951 20 O -0.309 6.309 21 C -0.156 4.156 22 C -0.122 4.122 23 C -0.073 4.073 24 H 0.044 0.956 25 H 0.110 0.890 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.215 0.785 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.241 0.759 35 H 0.147 0.853 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.872 -5.843 -14.570 15.810 hybrid contribution -0.217 -1.812 0.571 1.912 sum 1.655 -7.655 -14.000 16.042 Atomic orbital electron populations 1.22233 0.99045 0.99193 1.00636 1.18612 0.90119 0.93836 0.78410 0.93802 1.21148 1.32412 1.13366 0.90123 0.92282 1.24847 0.94755 0.94973 0.98916 1.69881 1.35865 1.22481 1.24070 0.86476 0.79251 0.79599 0.81624 1.21026 1.20147 1.20107 1.49464 1.72307 1.08952 1.05184 1.73997 1.04416 1.27472 0.93374 1.22932 1.09952 0.89311 0.95482 1.20398 1.00982 0.96771 0.90259 1.20772 1.01675 0.90688 0.98019 1.20361 0.98490 0.93829 0.95214 1.20698 1.03206 0.91125 0.99971 1.18285 1.00977 0.83259 0.92572 1.84825 1.41488 1.24616 1.79963 1.21213 1.01538 0.96530 0.96330 1.21233 0.99421 0.91758 0.99751 1.20206 0.98542 0.93938 0.94587 0.95566 0.88993 0.96932 0.92464 0.78538 0.90026 0.89924 0.90017 0.89934 0.85711 0.75901 0.85278 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.29 37.16 0.35 -3.41 16 2 C 0.29 7.53 3.23 -69.09 -0.22 7.30 16 3 H 0.04 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.53 -14.36 8.74 -34.45 -0.30 -14.66 16 5 H 0.06 1.57 7.79 -52.48 -0.41 1.16 16 6 C 0.07 1.84 5.30 -17.81 -0.09 1.75 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.62 -14.11 5.86 -5.89 -0.03 -14.15 16 13 N -0.18 -3.80 11.58 35.19 0.41 -3.39 16 14 C 0.01 0.19 7.44 -79.55 -0.59 -0.40 16 15 C -0.04 -0.58 6.86 -27.51 -0.19 -0.77 16 16 C -0.07 -0.80 6.80 -27.49 -0.19 -0.99 16 17 C -0.08 -1.04 6.20 -104.09 -0.65 -1.69 16 18 C -0.13 -1.65 9.97 -39.42 -0.39 -2.04 16 19 C 0.09 1.24 6.71 -39.16 -0.26 0.98 16 20 O -0.50 -5.58 13.50 -19.38 -0.26 -5.85 16 21 C -0.14 -1.97 9.96 -39.56 -0.39 -2.36 16 22 C -0.10 -1.66 9.19 -39.05 -0.36 -2.02 16 23 C -0.07 -1.15 6.00 -104.93 -0.63 -1.78 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.37 8.04 4.64 -182.59 -0.85 7.20 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.39 2.37 9.06 45.56 0.41 2.78 16 35 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.31 5.29 -52.48 -0.28 2.03 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -30.36 303.07 -8.01 -38.38 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.38 Total: 8.71 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -3.92 Total: -20.09 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.00 Total: -41.52 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.26 Total: -5.85 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.36 -8.01 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780237846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.644 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds