Wall clock time and date at job start Mon Mar 30 2020 04:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47187 * 2 1 4 4 C 1.50687 * 109.47225 * 120.00328 * 2 1 3 5 5 H 1.08004 * 120.00192 * 120.00259 * 4 2 1 6 6 C 1.37877 * 120.00399 * 299.99684 * 4 2 1 7 7 N 1.31526 * 119.99714 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00393 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46775 * 180.02562 * 8 6 4 10 10 H 1.48492 * 109.47239 * 299.99971 * 8 6 4 11 11 H 1.48498 * 109.46937 * 60.00649 * 8 6 4 12 12 N 1.46498 * 109.46902 * 240.00631 * 2 1 3 13 13 N 1.40103 * 120.00624 * 89.99916 * 12 2 1 14 14 C 1.29744 * 120.00120 * 186.18890 * 13 12 2 15 15 C 1.50951 * 125.97014 * 193.43467 * 14 13 12 16 16 C 1.53481 * 105.33116 * 179.97438 * 15 14 13 17 17 C 1.50998 * 106.35992 * 0.02562 * 16 15 14 18 18 C 1.38188 * 130.39039 * 180.02562 * 17 16 15 19 19 C 1.38732 * 120.27694 * 179.31118 * 18 17 16 20 20 O 1.35885 * 119.97594 * 180.17752 * 19 18 17 21 21 C 1.38887 * 120.04610 * 0.57041 * 19 18 17 22 22 C 1.37625 * 120.08243 * 359.62521 * 21 19 18 23 23 C 1.39322 * 109.64564 * 359.75297 * 17 16 15 24 24 H 1.08999 * 109.47495 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47275 * 300.00142 * 1 2 3 26 26 H 1.09001 * 109.47270 * 59.99607 * 1 2 3 27 27 H 0.96996 * 119.99840 * 179.97438 * 7 6 4 28 28 H 0.97005 * 120.00111 * 269.99685 * 12 2 1 29 29 H 1.09004 * 110.27406 * 298.92336 * 15 14 13 30 30 H 1.08995 * 110.27696 * 60.90275 * 15 14 13 31 31 H 1.09003 * 110.07425 * 119.21892 * 16 15 14 32 32 H 1.08996 * 110.07450 * 240.77021 * 16 15 14 33 33 H 1.08003 * 119.85897 * 359.96499 * 18 17 16 34 34 H 0.96699 * 113.99524 * 270.39612 * 20 19 18 35 35 H 1.07994 * 119.95643 * 179.59852 * 21 19 18 36 36 H 1.08004 * 119.91912 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 1.8260 -0.4208 5.2203 10 1 1.8258 -2.5203 4.0076 11 1 3.8064 -1.1210 4.0080 12 7 2.0182 -0.6905 -1.1962 13 7 2.2517 0.0301 -2.3749 14 6 2.5681 -0.5962 -3.4662 15 6 3.1205 0.0339 -4.7218 16 6 3.3224 -1.1281 -5.7040 17 6 2.8802 -2.3778 -4.9810 18 6 2.8532 -3.6937 -5.4021 19 6 2.4121 -4.6929 -4.5466 20 8 2.3915 -5.9853 -4.9658 21 6 1.9840 -4.3721 -3.2649 22 6 2.0036 -3.0638 -2.8383 23 6 2.4556 -2.0497 -3.6953 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7082 1.1607 3.4844 28 1 2.1799 -1.6467 -1.1723 29 1 2.4089 0.7525 -5.1284 30 1 4.0718 0.5228 -4.5120 31 1 2.7124 -0.9756 -6.5943 32 1 4.3741 -1.2068 -5.9793 33 1 3.1867 -3.9467 -6.3977 34 1 1.5631 -6.2480 -5.3897 35 1 1.6349 -5.1502 -2.6024 36 1 1.6697 -2.8173 -1.8412 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780237846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:35 Heat of formation + Delta-G solvation = 3.862104 kcal Electronic energy + Delta-G solvation = -18783.507227 eV Core-core repulsion = 15846.624119 eV Total energy + Delta-G solvation = -2936.883109 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27031 -39.02893 -37.57578 -35.95187 -35.09052 -32.98164 -31.25876 -29.60582 -28.96283 -27.34750 -25.48034 -23.88154 -22.69586 -21.75508 -20.88888 -18.88839 -18.76295 -17.78163 -17.07747 -16.69748 -16.37370 -16.02246 -15.55478 -15.27455 -14.61288 -14.50827 -14.06756 -13.87487 -13.47522 -13.28555 -13.21543 -13.01061 -12.86445 -12.82267 -12.59632 -12.49336 -12.30692 -12.11029 -11.66576 -11.49765 -11.20773 -10.74120 -10.60745 -9.86662 -9.78971 -8.31289 -8.19478 -6.38433 -0.14096 0.30814 1.40005 1.42308 1.49647 1.54556 2.16569 2.43890 2.72672 3.07619 3.15019 3.50392 3.77082 3.95699 4.16983 4.25633 4.37035 4.43291 4.46020 4.68587 4.77607 4.89153 4.94481 5.04662 5.06115 5.15194 5.25483 5.25780 5.36026 5.42282 5.47028 5.58433 5.75827 5.79605 5.86420 6.17421 6.38228 6.79957 6.84738 7.33067 7.73774 8.84175 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.005076 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.284584 B = 5514.806389 C = 6345.402923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.303 3.697 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.273 1.273 12 N -0.643 5.643 13 N -0.241 5.241 14 C 0.041 3.959 15 C -0.050 4.050 16 C -0.067 4.067 17 C -0.060 4.060 18 C -0.131 4.131 19 C 0.114 3.886 20 O -0.503 6.503 21 C -0.154 4.154 22 C -0.113 4.113 23 C -0.120 4.120 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.268 0.732 28 H 0.374 0.626 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.160 0.840 34 H 0.412 0.588 35 H 0.138 0.862 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -8.871 -18.306 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.199 3.801 3 H 0.021 0.979 4 C -0.589 4.589 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.794 3.206 9 H -0.202 1.202 10 H -0.193 1.193 11 H -0.198 1.198 12 N -0.383 5.383 13 N -0.051 5.051 14 C -0.149 4.149 15 C -0.090 4.090 16 C -0.104 4.104 17 C -0.063 4.063 18 C -0.149 4.149 19 C 0.068 3.932 20 O -0.316 6.316 21 C -0.172 4.172 22 C -0.134 4.134 23 C -0.123 4.123 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.216 0.784 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.178 0.822 34 H 0.271 0.729 35 H 0.156 0.844 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.917 -7.670 -17.347 19.190 hybrid contribution -0.506 -1.418 1.118 1.875 sum 2.411 -9.087 -16.230 18.756 Atomic orbital electron populations 1.22035 0.98906 0.98867 0.99706 1.18167 0.90198 0.91829 0.79884 0.97891 1.21413 1.32753 1.13509 0.91249 0.92633 1.25691 0.94762 0.95612 1.01793 1.70004 1.36582 1.23585 1.24833 0.85436 0.78607 0.78664 0.77866 1.20229 1.19348 1.19834 1.48913 1.75241 1.08607 1.05566 1.73991 1.09005 1.28110 0.93975 1.24008 1.04481 0.90906 0.95505 1.20716 1.01625 0.98153 0.88473 1.20898 1.03938 0.87713 0.97839 1.20750 0.96270 0.95436 0.93807 1.21023 1.02383 0.90233 1.01288 1.18378 0.98709 0.84232 0.91877 1.84761 1.43388 1.23346 1.80133 1.21349 1.02438 0.95801 0.97614 1.21197 1.00091 0.93122 0.98982 1.20367 1.01923 0.93399 0.96566 0.95403 0.90952 0.96544 0.92258 0.78367 0.88348 0.88663 0.86786 0.87150 0.82236 0.72855 0.84373 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.13 9.29 71.98 0.67 -6.46 16 2 C 0.30 16.67 3.23 44.24 0.14 16.81 16 3 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 4 C -0.55 -31.19 8.74 25.60 0.22 -30.97 16 5 H 0.06 3.09 7.79 -2.91 -0.02 3.07 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -52.50 11.32 21.45 0.24 -52.25 16 8 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 9 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.64 -31.30 5.86 -172.54 -1.01 -32.31 16 13 N -0.24 -10.70 11.58 -42.57 -0.49 -11.19 16 14 C 0.04 1.43 7.44 45.41 0.34 1.76 16 15 C -0.05 -1.17 6.86 30.09 0.21 -0.97 16 16 C -0.07 -1.13 6.80 30.10 0.20 -0.93 16 17 C -0.06 -1.43 6.20 -19.52 -0.12 -1.55 16 18 C -0.13 -2.72 9.97 22.38 0.22 -2.50 16 19 C 0.11 2.63 6.71 22.54 0.15 2.78 16 20 O -0.50 -9.27 13.50 -92.26 -1.25 -10.51 16 21 C -0.15 -4.25 9.96 22.28 0.22 -4.03 16 22 C -0.11 -3.79 9.19 22.61 0.21 -3.59 16 23 C -0.12 -3.87 6.00 -20.06 -0.12 -3.99 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.37 17.37 4.64 -213.31 -0.99 16.38 16 29 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.41 3.30 9.06 -74.06 -0.67 2.63 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.11 4.03 5.29 -2.91 -0.02 4.02 16 Total: -1.00 -69.57 303.07 1.77 -67.80 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.55 Total: 24.89 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 2.80 Total: -31.95 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -1.26 Total: -95.76 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.25 Total: -10.51 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.57 1.77 -67.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780237846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.665 kcal (2) G-P(sol) polarization free energy of solvation -69.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds