Wall clock time and date at job start Mon Mar 30 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 N 1.40092 * 120.00112 * 269.99905 * 12 2 1 14 14 C 1.29742 * 119.99955 * 180.02562 * 13 12 2 15 15 C 1.51731 * 121.66739 * 359.71369 * 14 13 12 16 16 O 1.42997 * 107.48159 * 220.48621 * 15 14 13 17 17 C 1.42581 * 114.48397 * 295.64468 * 16 15 14 18 18 C 1.50461 * 111.06812 * 55.05731 * 17 16 15 19 19 C 1.38098 * 120.02365 * 159.32585 * 18 17 16 20 20 C 1.38325 * 120.14212 * 179.46261 * 19 18 17 21 21 C 1.38390 * 120.56621 * 0.05687 * 20 19 18 22 22 C 1.38071 * 120.00432 * 0.10119 * 21 20 19 23 23 C 1.39306 * 119.56652 * 359.96542 * 22 21 20 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99524 * 89.99997 * 12 2 1 29 29 H 1.08992 * 109.89330 * 340.04112 * 15 14 13 30 30 H 1.09000 * 109.89279 * 101.14924 * 15 14 13 31 31 H 1.08996 * 109.16113 * 294.64635 * 17 16 15 32 32 H 1.09001 * 109.11073 * 175.43147 * 17 16 15 33 33 H 1.07995 * 119.92879 * 359.46649 * 19 18 17 34 34 H 1.07997 * 119.71492 * 180.02562 * 20 19 18 35 35 H 1.07993 * 119.99863 * 180.08697 * 21 20 19 36 36 H 1.08001 * 120.21842 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 7 2.2519 0.0298 2.3747 14 6 2.6848 -0.5817 3.4339 15 6 2.9448 -2.0766 3.4403 16 8 2.4807 -2.5880 4.6924 17 6 3.1869 -2.0968 5.8296 18 6 3.1807 -0.5926 5.8618 19 6 3.4160 0.0741 7.0481 20 6 3.4219 1.4570 7.0784 21 6 3.1919 2.1872 5.9255 22 6 2.9518 1.5357 4.7320 23 6 2.9439 0.1431 4.6986 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7092 1.1618 -3.4843 28 1 2.1800 -1.6468 1.1721 29 1 2.4027 -2.5508 2.6223 30 1 4.0131 -2.2677 3.3384 31 1 4.2175 -2.4496 5.7905 32 1 2.7131 -2.4759 6.7350 33 1 3.5959 -0.4854 7.9541 34 1 3.6071 1.9713 8.0098 35 1 3.2000 3.2665 5.9594 36 1 2.7715 2.1021 3.8303 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782252880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:43 Heat of formation + Delta-G solvation = 22.043120 kcal Electronic energy + Delta-G solvation = -18782.020868 eV Core-core repulsion = 15845.926148 eV Total energy + Delta-G solvation = -2936.094721 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98103 -37.52299 -36.48268 -34.21684 -31.93816 -31.67758 -30.28930 -28.31417 -26.58676 -25.32022 -25.21948 -23.01828 -21.45971 -20.42294 -19.06778 -17.44488 -16.91040 -16.16998 -15.90383 -15.27884 -15.06188 -14.90321 -14.17430 -13.82872 -13.63621 -13.11894 -13.09623 -12.61973 -12.46858 -12.17424 -11.91166 -11.51403 -11.12651 -11.10043 -10.96180 -10.79762 -10.54493 -10.47776 -10.26360 -10.17800 -9.17934 -9.05151 -8.81443 -8.65158 -8.52931 -6.88571 -6.18458 -4.27154 1.15660 1.44639 2.83146 3.20822 3.28506 3.31402 3.64342 3.74087 4.18627 4.32653 4.68408 4.77324 4.95445 5.07605 5.14398 5.19302 5.32037 5.38080 5.47577 5.57506 5.67843 5.86986 6.08651 6.11047 6.35256 6.53358 6.67569 6.72415 6.94747 6.95775 7.06010 7.09443 7.15490 7.51903 7.70905 7.79111 8.06805 8.21525 8.79280 9.17335 9.39861 10.87496 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.004423 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.799955 B = 6328.941293 C = 6830.386722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.295 3.705 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.616 5.616 13 N -0.170 5.170 14 C -0.025 4.025 15 C 0.087 3.913 16 O -0.372 6.372 17 C 0.105 3.895 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.096 4.096 23 C 0.010 3.990 24 H 0.013 0.987 25 H 0.091 0.909 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.370 0.630 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.981 -2.029 16.391 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.193 3.807 3 H 0.062 0.938 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.354 5.354 13 N 0.015 4.985 14 C -0.213 4.213 15 C 0.008 3.992 16 O -0.289 6.289 17 C 0.029 3.971 18 C -0.124 4.124 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.116 4.116 23 C 0.008 3.992 24 H 0.032 0.968 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.208 0.792 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.386 -1.087 15.668 16.307 hybrid contribution 0.689 -1.296 -0.744 1.645 sum 5.075 -2.382 14.924 15.943 Atomic orbital electron populations 1.22209 0.98814 0.99344 1.00659 1.18622 0.90309 0.93638 0.78092 0.93844 1.21243 1.32371 1.13365 0.90104 0.92093 1.24856 0.94754 0.94975 0.98977 1.69897 1.35952 1.22484 1.23907 0.86357 0.78632 0.79538 0.82380 1.19740 1.20793 1.20798 1.49159 1.71687 1.07987 1.06557 1.74032 1.03741 1.27116 0.93651 1.23140 1.10830 0.93941 0.93398 1.21947 0.99516 0.91159 0.86580 1.87890 1.59650 1.67518 1.13831 1.21257 0.97058 0.89133 0.89677 1.20459 1.02191 0.96419 0.93317 1.20736 1.01195 0.94458 0.96699 1.21070 1.01538 0.93926 0.98227 1.21137 1.00052 0.99838 0.92638 1.21298 0.98439 0.93357 0.98542 1.18010 0.98407 0.92556 0.90266 0.96790 0.89040 0.95422 0.92546 0.79244 0.88219 0.91725 0.91978 0.87837 0.86023 0.86310 0.85996 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.29 37.16 0.35 -3.37 16 2 C 0.30 7.47 3.23 -69.08 -0.22 7.24 16 3 H 0.04 1.22 8.14 -51.93 -0.42 0.79 16 4 C -0.53 -14.10 8.74 -34.44 -0.30 -14.40 16 5 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.62 -13.61 6.00 -5.88 -0.04 -13.65 16 13 N -0.17 -3.55 10.91 35.49 0.39 -3.17 16 14 C -0.03 -0.46 6.97 -78.94 -0.55 -1.01 16 15 C 0.09 1.37 6.61 36.51 0.24 1.62 16 16 O -0.37 -5.68 10.71 -35.23 -0.38 -6.05 16 17 C 0.11 1.27 6.69 35.89 0.24 1.51 16 18 C -0.12 -1.64 5.86 -104.26 -0.61 -2.25 16 19 C -0.11 -1.26 9.72 -39.60 -0.38 -1.65 16 20 C -0.13 -1.41 10.02 -39.49 -0.40 -1.81 16 21 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 22 C -0.10 -1.47 9.64 -39.25 -0.38 -1.84 16 23 C 0.01 0.16 5.85 -104.95 -0.61 -0.45 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.37 7.55 6.35 -182.60 -1.16 6.39 16 29 H 0.10 1.58 6.11 -51.93 -0.32 1.27 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.13 2.13 7.74 -52.49 -0.41 1.72 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -28.98 303.14 -8.52 -37.50 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.55 Total: 5.62 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -3.12 Total: -16.58 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.98 Total: -40.59 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.38 Total: -6.05 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.98 -8.52 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782252880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.543 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds