Wall clock time and date at job start Mon Mar 30 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 N 1.40092 * 120.00112 * 269.99905 * 12 2 1 14 14 C 1.29742 * 119.99955 * 180.02562 * 13 12 2 15 15 C 1.51731 * 121.66739 * 359.71369 * 14 13 12 16 16 O 1.42997 * 107.48159 * 220.48621 * 15 14 13 17 17 C 1.42581 * 114.48397 * 295.64468 * 16 15 14 18 18 C 1.50461 * 111.06812 * 55.05731 * 17 16 15 19 19 C 1.38098 * 120.02365 * 159.32585 * 18 17 16 20 20 C 1.38325 * 120.14212 * 179.46261 * 19 18 17 21 21 C 1.38390 * 120.56621 * 0.05687 * 20 19 18 22 22 C 1.38071 * 120.00432 * 0.10119 * 21 20 19 23 23 C 1.39306 * 119.56652 * 359.96542 * 22 21 20 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99524 * 89.99997 * 12 2 1 29 29 H 1.08992 * 109.89330 * 340.04112 * 15 14 13 30 30 H 1.09000 * 109.89279 * 101.14924 * 15 14 13 31 31 H 1.08996 * 109.16113 * 294.64635 * 17 16 15 32 32 H 1.09001 * 109.11073 * 175.43147 * 17 16 15 33 33 H 1.07995 * 119.92879 * 359.46649 * 19 18 17 34 34 H 1.07997 * 119.71492 * 180.02562 * 20 19 18 35 35 H 1.07993 * 119.99863 * 180.08697 * 21 20 19 36 36 H 1.08001 * 120.21842 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 7 2.2519 0.0298 2.3747 14 6 2.6848 -0.5817 3.4339 15 6 2.9448 -2.0766 3.4403 16 8 2.4807 -2.5880 4.6924 17 6 3.1869 -2.0968 5.8296 18 6 3.1807 -0.5926 5.8618 19 6 3.4160 0.0741 7.0481 20 6 3.4219 1.4570 7.0784 21 6 3.1919 2.1872 5.9255 22 6 2.9518 1.5357 4.7320 23 6 2.9439 0.1431 4.6986 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7092 1.1618 -3.4843 28 1 2.1800 -1.6468 1.1721 29 1 2.4027 -2.5508 2.6223 30 1 4.0131 -2.2677 3.3384 31 1 4.2175 -2.4496 5.7905 32 1 2.7131 -2.4759 6.7350 33 1 3.5959 -0.4854 7.9541 34 1 3.6071 1.9713 8.0098 35 1 3.2000 3.2665 5.9594 36 1 2.7715 2.1021 3.8303 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782252880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:43 Heat of formation + Delta-G solvation = 4.150536 kcal Electronic energy + Delta-G solvation = -18782.796749 eV Core-core repulsion = 15845.926148 eV Total energy + Delta-G solvation = -2936.870601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08784 -38.66032 -37.99610 -35.99847 -33.62191 -32.69290 -31.68842 -29.66915 -28.14370 -27.27526 -26.34648 -24.19725 -22.70578 -22.09581 -20.41500 -18.94590 -18.09385 -17.80439 -17.13733 -16.75002 -16.38109 -16.12528 -15.48514 -15.23947 -14.81501 -14.53963 -14.43414 -14.29452 -13.77437 -13.50513 -13.28788 -12.97390 -12.93269 -12.70985 -12.50200 -12.25718 -12.11711 -11.96601 -11.92575 -11.62855 -11.11061 -10.61849 -10.36814 -9.99620 -9.63451 -8.46912 -8.19871 -6.37707 0.03305 0.45110 1.41705 1.42522 1.53779 1.55024 2.06627 2.43469 2.69349 3.07762 3.09194 3.47820 3.75815 3.92488 4.00738 4.17920 4.26090 4.46538 4.47698 4.54126 4.63206 4.69049 4.83943 4.93174 5.00268 5.07817 5.09449 5.20972 5.44818 5.54299 5.60214 5.63546 5.76133 5.83377 6.04936 6.08605 6.13229 6.33879 6.79111 7.33727 7.63665 8.85244 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.004423 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.799955 B = 6328.941293 C = 6830.386722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.306 3.694 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.635 5.635 13 N -0.223 5.223 14 C 0.003 3.997 15 C 0.087 3.913 16 O -0.385 6.385 17 C 0.096 3.904 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.038 4.038 24 H 0.014 0.986 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.267 0.733 28 H 0.375 0.625 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 -3.174 19.280 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.203 3.797 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.797 3.203 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.373 5.373 13 N -0.035 5.035 14 C -0.187 4.187 15 C 0.008 3.992 16 O -0.303 6.303 17 C 0.020 3.980 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.040 4.040 24 H 0.033 0.967 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.213 0.787 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.153 0.847 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.702 -2.232 18.578 19.561 hybrid contribution 0.373 -0.879 -1.267 1.586 sum 6.075 -3.111 17.311 18.608 Atomic orbital electron populations 1.22027 0.98799 0.99120 0.99624 1.18185 0.90277 0.91722 0.79548 0.97946 1.21518 1.32613 1.13557 0.90975 0.91932 1.25716 0.94792 0.95609 1.01936 1.70023 1.36812 1.23709 1.24702 0.85296 0.78164 0.78449 0.78410 1.19018 1.20161 1.20508 1.48586 1.74246 1.07837 1.06596 1.74067 1.07496 1.27734 0.94171 1.23917 1.05962 0.95604 0.93170 1.21940 1.00564 0.89458 0.87249 1.87875 1.60596 1.67605 1.14175 1.21666 0.98622 0.88213 0.89460 1.20761 1.01147 0.97307 0.93087 1.21221 0.99340 0.94851 0.97091 1.21581 0.98547 0.94162 0.98888 1.21425 0.99546 1.01169 0.92077 1.21296 0.99738 0.93394 0.99134 1.18222 1.02099 0.93181 0.90484 0.96654 0.91025 0.95047 0.92339 0.78689 0.88853 0.89751 0.89607 0.84677 0.81897 0.82461 0.83925 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.07 9.29 71.98 0.67 -6.40 16 2 C 0.31 16.42 3.23 44.24 0.14 16.57 16 3 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 4 C -0.55 -30.09 8.74 25.60 0.22 -29.86 16 5 H 0.06 3.33 7.79 -2.91 -0.02 3.30 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -52.09 11.32 21.45 0.24 -51.85 16 8 Si 0.97 42.68 29.54 68.60 2.03 44.70 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 12 N -0.63 -29.65 6.00 -172.52 -1.04 -30.69 16 13 N -0.22 -9.86 10.91 -41.63 -0.45 -10.31 16 14 C 0.00 0.13 6.97 45.80 0.32 0.45 16 15 C 0.09 2.72 6.61 71.57 0.47 3.19 16 16 O -0.39 -11.04 10.71 -148.98 -1.60 -12.63 16 17 C 0.10 1.96 6.69 71.16 0.48 2.43 16 18 C -0.12 -2.90 5.86 -19.63 -0.12 -3.01 16 19 C -0.11 -1.88 9.72 22.26 0.22 -1.66 16 20 C -0.11 -1.97 10.02 22.33 0.22 -1.75 16 21 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 22 C -0.12 -3.55 9.64 22.49 0.22 -3.34 16 23 C -0.04 -1.20 5.85 -20.07 -0.12 -1.32 16 24 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 26 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.37 16.08 6.35 -213.32 -1.35 14.72 16 29 H 0.09 3.02 6.11 -2.39 -0.01 3.01 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.14 1.91 8.13 -2.39 -0.02 1.89 16 33 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.11 3.76 7.74 -2.91 -0.02 3.74 16 Total: -1.00 -66.10 303.14 2.32 -63.79 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.27 Total: 22.77 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 3.40 Total: -25.77 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -1.25 Total: -92.85 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -1.60 Total: -12.63 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.10 2.32 -63.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782252880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.937 kcal (2) G-P(sol) polarization free energy of solvation -66.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds