Wall clock time and date at job start Mon Mar 30 2020 04:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53784 * 113.61747 * 2 1 4 4 C 1.53780 * 87.08261 * 220.02258 * 3 2 1 5 5 C 1.50700 * 113.61642 * 139.98130 * 4 3 2 6 6 O 1.21263 * 120.00087 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99770 * 180.02562 * 5 4 3 8 8 C 1.37205 * 120.00113 * 5.39585 * 7 5 4 9 9 H 1.08001 * 120.00354 * 6.71089 * 8 7 5 10 10 C 1.38892 * 120.00278 * 186.70142 * 8 7 5 11 11 N 1.31420 * 119.99525 * 353.36174 * 10 8 7 12 12 Si 1.86799 * 120.00252 * 173.36151 * 10 8 7 13 13 H 1.48495 * 109.47070 * 90.00342 * 12 10 8 14 14 H 1.48501 * 109.46780 * 210.00117 * 12 10 8 15 15 H 1.48497 * 109.47189 * 329.99749 * 12 10 8 16 16 C 1.39428 * 119.99543 * 185.40584 * 7 5 4 17 17 C 1.39059 * 119.69888 * 84.92304 * 16 7 5 18 18 C 1.38383 * 119.09666 * 179.97438 * 17 16 7 19 19 C 1.38830 * 118.49421 * 359.97438 * 18 17 16 20 20 C 1.38149 * 119.30741 * 0.25725 * 19 18 17 21 21 N 1.31881 * 120.85190 * 359.45134 * 20 19 18 22 22 C 1.53776 * 87.08403 * 25.42808 * 4 3 2 23 23 H 1.09001 * 109.47145 * 59.99854 * 1 2 3 24 24 H 1.08996 * 109.46831 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46766 * 299.99935 * 1 2 3 26 26 H 1.09004 * 112.90934 * 131.24627 * 2 1 3 27 27 H 1.08991 * 113.61678 * 105.46924 * 3 2 1 28 28 H 1.09006 * 113.60879 * 334.56746 * 3 2 1 29 29 H 1.09007 * 113.60860 * 270.79606 * 4 3 2 30 30 H 0.96998 * 119.99552 * 179.97438 * 11 10 8 31 31 H 1.08001 * 120.45100 * 359.97438 * 17 16 7 32 32 H 1.08009 * 120.75338 * 180.02562 * 18 17 16 33 33 H 1.08001 * 120.34335 * 179.97438 * 19 18 17 34 34 H 1.07995 * 119.56963 * 179.72413 * 20 19 18 35 35 H 1.09004 * 113.61457 * 89.11989 * 22 4 3 36 36 H 1.08995 * 113.62021 * 220.02271 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 3.1923 0.8661 -0.9877 5 6 3.5407 1.8329 -2.0900 6 8 3.0070 2.9208 -2.1335 7 7 4.4449 1.4878 -3.0281 8 6 4.9657 0.2185 -3.0449 9 1 4.5738 -0.5349 -2.3777 10 6 5.9967 -0.0976 -3.9202 11 7 6.3853 0.7771 -4.8209 12 14 6.8309 -1.7658 -3.8174 13 1 6.1218 -2.7289 -4.6976 14 1 8.2437 -1.6406 -4.2573 15 1 6.7904 -2.2538 -2.4155 16 6 4.8511 2.4208 -3.9812 17 6 5.8772 3.3101 -3.6812 18 6 6.2708 4.2306 -4.6366 19 6 5.6223 4.2294 -5.8642 20 6 4.6075 3.3201 -6.0920 21 7 4.2576 2.4507 -5.1642 22 6 2.1461 -0.1839 -1.3970 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9543 -0.6620 0.7549 27 1 2.5650 1.7024 0.9624 28 1 1.4945 2.1704 -0.4289 29 1 4.0717 0.4422 -0.5028 30 1 7.1056 0.5564 -5.4319 31 1 6.3604 3.2828 -2.7157 32 1 7.0651 4.9334 -4.4323 33 1 5.9052 4.9351 -6.6313 34 1 4.0972 3.3185 -7.0438 35 1 1.4945 0.1420 -2.2079 36 1 2.5650 -1.1764 -1.5622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826716129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:21 Heat of formation + Delta-G solvation = 13.835222 kcal Electronic energy + Delta-G solvation = -19791.789107 eV Core-core repulsion = 16855.338465 eV Total energy + Delta-G solvation = -2936.450642 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62889 -40.32483 -38.46617 -36.70405 -33.58644 -32.96904 -31.49752 -30.38958 -26.98732 -26.53090 -25.77231 -24.09481 -23.28000 -21.08857 -20.31755 -19.52334 -18.16517 -17.27833 -17.01243 -16.54742 -16.42498 -16.06892 -15.49857 -15.19469 -14.78752 -14.27175 -14.06280 -13.82782 -13.74742 -13.39406 -13.37031 -12.96384 -12.91945 -12.76042 -12.35970 -12.13517 -12.03489 -11.65709 -11.56587 -11.28538 -11.01351 -10.53229 -10.41338 -10.23539 -9.74943 -9.65108 -8.15167 -5.96792 0.62638 0.79220 1.39959 1.44356 1.56324 1.88153 2.23818 2.72987 3.14569 3.29680 3.68408 3.77131 3.90872 4.01998 4.06619 4.19058 4.43013 4.51249 4.59553 4.60040 4.67712 4.84807 4.88867 4.94111 4.99180 5.00311 5.06562 5.16259 5.28418 5.40857 5.44824 5.47759 5.48822 5.68851 5.71365 6.08478 6.49666 7.06804 7.40631 7.60292 7.89210 8.71668 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.008689 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.596835 B = 3221.677083 C = 4417.184414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 C -0.113 4.113 4 C -0.118 4.118 5 C 0.468 3.532 6 O -0.632 6.632 7 N -0.424 5.424 8 C -0.346 4.346 9 H 0.124 0.876 10 C -0.014 4.014 11 N -0.886 5.886 12 Si 1.000 3.000 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.250 1.250 16 C 0.435 3.565 17 C -0.176 4.176 18 C -0.071 4.071 19 C -0.198 4.198 20 C 0.096 3.904 21 N -0.526 5.526 22 C -0.113 4.113 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.056 0.944 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -1.300 4.940 5.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.151 4.151 4 C -0.139 4.139 5 C 0.260 3.740 6 O -0.520 6.520 7 N -0.142 5.142 8 C -0.472 4.472 9 H 0.142 0.858 10 C -0.216 4.216 11 N -0.524 5.524 12 Si 0.823 3.177 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.173 1.173 16 C 0.209 3.791 17 C -0.198 4.198 18 C -0.097 4.097 19 C -0.218 4.218 20 C -0.062 4.062 21 N -0.239 5.239 22 C -0.151 4.151 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.173 0.827 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.075 0.925 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.624 -1.386 4.589 5.465 hybrid contribution 1.376 -0.049 -0.484 1.460 sum -1.248 -1.435 4.105 4.524 Atomic orbital electron populations 1.21692 0.93783 1.02394 1.01633 1.22463 0.96411 0.96212 0.96328 1.22869 0.96601 0.97480 0.98146 1.22537 0.99465 0.96898 0.95024 1.20981 0.79829 0.88448 0.84775 1.90494 1.55998 1.26464 1.79006 1.41680 1.37762 1.11471 1.23269 1.20204 1.16651 0.86972 1.23362 0.85844 1.26218 0.97397 1.03187 0.94767 1.69704 1.28310 1.36073 1.18308 0.84809 0.76756 0.76638 0.79476 1.20480 1.21151 1.17349 1.17828 0.88529 0.86415 0.86303 1.21668 0.98496 0.98893 1.00767 1.21538 0.98579 0.96740 0.92822 1.22112 0.98849 1.02311 0.98542 1.22741 0.95408 0.90698 0.97322 1.67097 1.31499 1.23049 1.02238 1.22851 0.96303 0.98165 0.97761 0.94254 0.91088 0.91275 0.86627 0.90009 0.91587 0.86468 0.92141 0.87817 0.82749 0.82028 0.82077 0.92532 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.71 71.98 0.70 -2.44 16 2 C -0.10 -2.51 4.36 -10.27 -0.04 -2.56 16 3 C -0.11 -3.70 6.97 31.12 0.22 -3.48 16 4 C -0.12 -4.59 2.76 -11.02 -0.03 -4.62 16 5 C 0.47 23.87 7.11 87.66 0.62 24.50 16 6 O -0.63 -35.99 15.88 -2.98 -0.05 -36.04 16 7 N -0.42 -22.87 2.74 -464.39 -1.27 -24.14 16 8 C -0.35 -17.77 9.24 84.01 0.78 -16.99 16 9 H 0.12 5.72 5.79 -2.91 -0.02 5.71 16 10 C -0.01 -0.72 5.44 84.91 0.46 -0.26 16 11 N -0.89 -47.71 9.76 21.65 0.21 -47.50 16 12 Si 1.00 40.00 29.56 68.60 2.03 42.03 16 13 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.29 -11.47 7.11 99.48 0.71 -10.77 16 15 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 16 C 0.43 23.63 2.94 132.90 0.39 24.02 16 17 C -0.18 -8.64 9.26 22.50 0.21 -8.43 16 18 C -0.07 -2.82 10.17 22.45 0.23 -2.59 16 19 C -0.20 -7.41 10.11 22.39 0.23 -7.18 16 20 C 0.10 4.20 11.18 84.66 0.95 5.15 16 21 N -0.53 -28.25 9.87 -192.96 -1.90 -30.15 16 22 C -0.11 -3.82 6.62 31.12 0.21 -3.61 16 23 H 0.04 1.02 7.94 -2.39 -0.02 1.00 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.07 2.49 7.39 -2.38 -0.02 2.47 16 29 H 0.12 4.22 7.78 -2.38 -0.02 4.20 16 30 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 32 H 0.15 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.16 5.80 8.06 -2.91 -0.02 5.78 16 35 H 0.06 2.17 7.91 -2.38 -0.02 2.15 16 36 H 0.08 2.53 7.84 -2.39 -0.02 2.52 16 Total: -1.00 -70.43 302.75 4.99 -65.44 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 1.07 Total: 28.87 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.91 Total: 1.50 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.96 Total: -101.80 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.05 Total: -36.04 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -70.43 4.99 -65.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826716129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.271 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds