Wall clock time and date at job start Mon Mar 30 2020 04:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47520 * 2 1 4 4 C 1.36639 * 119.99819 * 85.88797 * 3 2 1 5 5 H 1.07999 * 119.99651 * 167.23494 * 4 3 2 6 6 C 1.39186 * 120.00131 * 347.23570 * 4 3 2 7 7 N 1.31277 * 119.99798 * 1.85628 * 6 4 3 8 8 Si 1.86796 * 119.99985 * 181.85584 * 6 4 3 9 9 H 1.48500 * 109.47258 * 89.99868 * 8 6 4 10 10 H 1.48494 * 109.47235 * 210.00253 * 8 6 4 11 11 H 1.48503 * 109.46925 * 330.00130 * 8 6 4 12 12 C 1.34774 * 119.99868 * 265.89634 * 3 2 1 13 13 O 1.21739 * 119.99679 * 185.20357 * 12 3 2 14 14 C 1.46419 * 120.00494 * 5.19456 * 12 3 2 15 15 C 1.50694 * 119.99935 * 101.09966 * 14 12 3 16 16 C 1.34842 * 120.00047 * 281.10803 * 14 12 3 17 17 C 1.47307 * 120.00109 * 352.87250 * 16 14 12 18 18 C 1.40201 * 120.95062 * 325.84106 * 17 16 14 19 19 C 1.37965 * 118.95878 * 179.72873 * 18 17 16 20 20 N 1.31903 * 120.93079 * 0.25002 * 19 18 17 21 21 C 1.31902 * 122.12447 * 359.97438 * 20 19 18 22 22 C 1.37965 * 120.92775 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47473 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46859 * 300.00297 * 1 2 3 25 25 H 1.09006 * 109.46609 * 59.99988 * 1 2 3 26 26 H 1.09004 * 109.46555 * 239.99794 * 2 1 3 27 27 H 1.08999 * 109.46578 * 120.00424 * 2 1 3 28 28 H 0.97001 * 119.99801 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47422 * 264.93801 * 15 14 12 30 30 H 1.09004 * 109.47126 * 24.93491 * 15 14 12 31 31 H 1.08998 * 109.47322 * 144.93663 * 15 14 12 32 32 H 1.08001 * 119.99846 * 172.87337 * 16 14 12 33 33 H 1.08000 * 120.52176 * 0.02562 * 18 17 16 34 34 H 1.08004 * 119.53739 * 180.22918 * 19 18 17 35 35 H 1.08004 * 119.53418 * 180.02562 * 21 20 19 36 36 H 1.08004 * 120.51567 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1662 2.0535 1.1803 5 1 2.7132 2.9844 1.2066 6 6 1.6119 1.5387 2.3486 7 7 0.9784 0.3892 2.3235 8 14 1.7693 2.4836 3.9523 9 1 0.6113 3.4011 4.1020 10 1 1.7944 1.5286 5.0891 11 1 3.0275 3.2723 3.9406 12 6 2.3219 1.9886 -1.1642 13 8 2.8166 3.1009 -1.1595 14 6 2.0567 1.3107 -2.4346 15 6 0.8421 1.6800 -3.2466 16 6 2.8993 0.3559 -2.8780 17 6 4.1654 0.1035 -2.1686 18 6 4.8707 1.1500 -1.5579 19 6 6.0495 0.8662 -0.8995 20 7 6.5156 -0.3665 -0.8446 21 6 5.8872 -1.3797 -1.4086 22 6 4.7017 -1.1893 -2.0882 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.5924 0.0303 3.1378 29 1 0.0263 0.9964 -3.0115 30 1 0.5416 2.7001 -3.0074 31 1 1.0798 1.6106 -4.3081 32 1 2.6459 -0.2238 -3.7533 33 1 4.4948 2.1617 -1.5981 34 1 6.5985 1.6647 -0.4226 35 1 6.3065 -2.3725 -1.3375 36 1 4.1924 -2.0238 -2.5472 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846839118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:01 Heat of formation + Delta-G solvation = 37.541521 kcal Electronic energy + Delta-G solvation = -20092.753511 eV Core-core repulsion = 17157.330852 eV Total energy + Delta-G solvation = -2935.422660 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87398 -38.62096 -35.35835 -34.53770 -31.82587 -31.39590 -30.72194 -29.44284 -26.88336 -25.36116 -23.22578 -22.53305 -22.13916 -21.06506 -18.07209 -16.99935 -16.54457 -15.85805 -15.37422 -15.25675 -14.34473 -14.16816 -14.08425 -13.41322 -13.15547 -13.00827 -12.93423 -12.76551 -12.68902 -11.82773 -11.70896 -11.53610 -11.39821 -11.10964 -10.88994 -10.70271 -10.37645 -10.15988 -10.12311 -9.74303 -9.06512 -8.86500 -8.69312 -8.57398 -7.97363 -7.73300 -6.27717 -3.89681 1.23173 1.63435 2.60254 3.11318 3.21308 3.26711 3.74785 4.07883 4.32649 4.82562 4.87104 4.95643 5.08787 5.24305 5.48797 5.50238 5.63619 5.77383 5.81482 5.88667 6.08115 6.13972 6.25818 6.34105 6.38904 6.63806 6.66997 6.74216 6.76922 6.87383 7.02719 7.19685 7.34388 7.53338 7.78482 8.02798 8.41068 8.46242 9.09903 9.36758 9.89677 10.59353 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.008914 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.740149 B = 3140.319404 C = 3774.542739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.120 3.880 3 N -0.420 5.420 4 C -0.295 4.295 5 H 0.104 0.896 6 C 0.024 3.976 7 N -0.872 5.872 8 Si 0.931 3.069 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.467 3.533 13 O -0.597 6.597 14 C -0.085 4.085 15 C -0.108 4.108 16 C -0.137 4.137 17 C -0.006 4.006 18 C -0.157 4.157 19 C 0.099 3.901 20 N -0.494 5.494 21 C 0.087 3.913 22 C -0.169 4.169 23 H 0.033 0.967 24 H 0.094 0.906 25 H 0.015 0.985 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.266 0.734 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -4.558 -7.428 8.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.003 4.003 3 N -0.135 5.135 4 C -0.423 4.423 5 H 0.122 0.878 6 C -0.177 4.177 7 N -0.513 5.513 8 Si 0.758 3.242 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.256 3.744 13 O -0.486 6.486 14 C -0.088 4.088 15 C -0.165 4.165 16 C -0.156 4.156 17 C -0.014 4.014 18 C -0.176 4.176 19 C -0.057 4.057 20 N -0.204 5.204 21 C -0.070 4.070 22 C -0.189 4.189 23 H 0.052 0.948 24 H 0.113 0.887 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.129 0.871 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.934 -4.324 -6.765 8.258 hybrid contribution -0.995 0.248 0.363 1.088 sum 0.939 -4.076 -6.401 7.646 Atomic orbital electron populations 1.22272 0.96712 0.99558 1.01439 1.21680 0.94646 0.83055 1.00909 1.43674 1.53613 1.11612 1.04571 1.19785 1.31935 1.06529 0.84029 0.87827 1.25347 0.95938 0.96559 0.99870 1.70105 1.35516 1.17625 1.28102 0.85833 0.79004 0.78971 0.80407 1.20337 1.20862 1.19386 1.17709 0.86289 0.86742 0.83624 1.90620 1.49928 1.20999 1.87074 1.22225 0.96511 0.94022 0.96090 1.20746 0.95000 1.02580 0.98164 1.21744 0.93692 0.99144 1.00981 1.19354 0.93993 0.93128 0.94895 1.23246 0.95515 1.02405 0.96475 1.22581 0.93875 0.93580 0.95686 1.67509 1.34433 1.00234 1.18228 1.22476 0.92428 0.97761 0.94322 1.22184 0.97776 0.96766 1.02195 0.94786 0.88714 0.96605 0.95081 0.87128 0.92299 0.90766 0.91028 0.91437 0.85510 0.82109 0.83190 0.83445 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.50 37.16 0.35 -2.66 16 2 C 0.12 2.73 5.22 -4.04 -0.02 2.71 16 3 N -0.42 -10.44 2.62 -116.40 -0.30 -10.75 16 4 C -0.29 -7.93 9.49 -15.06 -0.14 -8.08 16 5 H 0.10 2.94 7.21 -52.49 -0.38 2.56 16 6 C 0.02 0.62 5.33 -17.44 -0.09 0.53 16 7 N -0.87 -21.73 7.17 55.51 0.40 -21.34 16 8 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.47 11.11 4.32 -12.97 -0.06 11.06 16 13 O -0.60 -15.99 14.74 5.15 0.08 -15.92 16 14 C -0.08 -1.61 4.48 -102.54 -0.46 -2.07 16 15 C -0.11 -1.66 10.03 36.00 0.36 -1.30 16 16 C -0.14 -2.30 8.30 -37.10 -0.31 -2.61 16 17 C -0.01 -0.10 5.07 -104.74 -0.53 -0.63 16 18 C -0.16 -3.14 8.42 -38.94 -0.33 -3.47 16 19 C 0.10 1.86 11.17 -17.62 -0.20 1.66 16 20 N -0.49 -9.06 10.34 -13.36 -0.14 -9.20 16 21 C 0.09 1.39 11.17 -17.62 -0.20 1.19 16 22 C -0.17 -2.67 9.90 -38.95 -0.39 -3.05 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 2.27 5.84 -51.93 -0.30 1.96 16 25 H 0.01 0.30 7.42 -51.93 -0.39 -0.08 16 26 H 0.03 0.65 5.40 -51.93 -0.28 0.37 16 27 H 0.11 2.78 5.98 -51.93 -0.31 2.47 16 28 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 29 H 0.07 1.05 7.43 -51.93 -0.39 0.66 16 30 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 31 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.16 3.60 4.85 -52.49 -0.25 3.35 16 34 H 0.15 2.53 8.06 -52.48 -0.42 2.11 16 35 H 0.15 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -29.43 297.12 -6.91 -36.34 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.39 Total: 7.72 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.01 Total: -6.72 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.04 Total: -41.28 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.08 Total: -15.92 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.43 -6.91 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846839118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.883 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds