Wall clock time and date at job start Mon Mar 30 2020 04:52:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46498 * 109.47520 * 2 1
4 4 C 1.36639 * 119.99819 * 85.88797 * 3 2 1
5 5 H 1.07999 * 119.99651 * 167.23494 * 4 3 2
6 6 C 1.39186 * 120.00131 * 347.23570 * 4 3 2
7 7 N 1.31277 * 119.99798 * 1.85628 * 6 4 3
8 8 Si 1.86796 * 119.99985 * 181.85584 * 6 4 3
9 9 H 1.48500 * 109.47258 * 89.99868 * 8 6 4
10 10 H 1.48494 * 109.47235 * 210.00253 * 8 6 4
11 11 H 1.48503 * 109.46925 * 330.00130 * 8 6 4
12 12 C 1.34774 * 119.99868 * 265.89634 * 3 2 1
13 13 O 1.21739 * 119.99679 * 185.20357 * 12 3 2
14 14 C 1.46419 * 120.00494 * 5.19456 * 12 3 2
15 15 C 1.50694 * 119.99935 * 101.09966 * 14 12 3
16 16 C 1.34842 * 120.00047 * 281.10803 * 14 12 3
17 17 C 1.47307 * 120.00109 * 352.87250 * 16 14 12
18 18 C 1.40201 * 120.95062 * 325.84106 * 17 16 14
19 19 C 1.37965 * 118.95878 * 179.72873 * 18 17 16
20 20 N 1.31903 * 120.93079 * 0.25002 * 19 18 17
21 21 C 1.31902 * 122.12447 * 359.97438 * 20 19 18
22 22 C 1.37965 * 120.92775 * 0.02562 * 21 20 19
23 23 H 1.08994 * 109.47473 * 180.02562 * 1 2 3
24 24 H 1.08996 * 109.46859 * 300.00297 * 1 2 3
25 25 H 1.09006 * 109.46609 * 59.99988 * 1 2 3
26 26 H 1.09004 * 109.46555 * 239.99794 * 2 1 3
27 27 H 1.08999 * 109.46578 * 120.00424 * 2 1 3
28 28 H 0.97001 * 119.99801 * 179.97438 * 7 6 4
29 29 H 1.09000 * 109.47422 * 264.93801 * 15 14 12
30 30 H 1.09004 * 109.47126 * 24.93491 * 15 14 12
31 31 H 1.08998 * 109.47322 * 144.93663 * 15 14 12
32 32 H 1.08001 * 119.99846 * 172.87337 * 16 14 12
33 33 H 1.08000 * 120.52176 * 0.02562 * 18 17 16
34 34 H 1.08004 * 119.53739 * 180.22918 * 19 18 17
35 35 H 1.08004 * 119.53418 * 180.02562 * 21 20 19
36 36 H 1.08004 * 120.51567 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0185 1.3812 0.0000
4 6 2.1662 2.0535 1.1803
5 1 2.7132 2.9844 1.2066
6 6 1.6119 1.5387 2.3486
7 7 0.9784 0.3892 2.3235
8 14 1.7693 2.4836 3.9523
9 1 0.6113 3.4011 4.1020
10 1 1.7944 1.5286 5.0891
11 1 3.0275 3.2723 3.9406
12 6 2.3219 1.9886 -1.1642
13 8 2.8166 3.1009 -1.1595
14 6 2.0567 1.3107 -2.4346
15 6 0.8421 1.6800 -3.2466
16 6 2.8993 0.3559 -2.8780
17 6 4.1654 0.1035 -2.1686
18 6 4.8707 1.1500 -1.5579
19 6 6.0495 0.8662 -0.8995
20 7 6.5156 -0.3665 -0.8446
21 6 5.8872 -1.3797 -1.4086
22 6 4.7017 -1.1893 -2.0882
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 -0.3633 0.5139 -0.8901
26 1 1.8933 -0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 0.5924 0.0303 3.1378
29 1 0.0263 0.9964 -3.0115
30 1 0.5416 2.7001 -3.0074
31 1 1.0798 1.6106 -4.3081
32 1 2.6459 -0.2238 -3.7533
33 1 4.4948 2.1617 -1.5981
34 1 6.5985 1.6647 -0.4226
35 1 6.3065 -2.3725 -1.3375
36 1 4.1924 -2.0238 -2.5472
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000846839118.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:00
Heat of formation + Delta-G solvation = 20.352529 kcal
Electronic energy + Delta-G solvation = -20093.498882 eV
Core-core repulsion = 17157.330852 eV
Total energy + Delta-G solvation = -2936.168030 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.37839 -40.25175 -37.18822 -36.08920 -33.59767 -32.89195 -32.07655 -31.23192
-28.17481 -27.21828 -24.71639 -24.03082 -23.74850 -22.66570 -19.71525 -18.80429
-18.18906 -17.33747 -17.01875 -16.74653 -16.07378 -15.74394 -15.64822 -14.84784
-14.75364 -14.62645 -14.38592 -14.21415 -14.09338 -13.40301 -13.26105 -13.13356
-12.89080 -12.83640 -12.62131 -12.31376 -12.17778 -11.97646 -11.86567 -11.21505
-10.75176 -10.49519 -10.34944 -10.04476 -9.67705 -9.35415 -8.20654 -5.90368
-0.15635 0.27146 1.21922 1.34659 1.39160 1.49746 1.97783 2.25992
2.95418 3.06746 3.16853 3.57702 3.66524 3.91529 4.01378 4.20706
4.31021 4.45326 4.49768 4.62941 4.74416 4.76910 4.90152 4.94440
4.99244 5.00372 5.10938 5.17310 5.31042 5.36434 5.40724 5.61251
5.69614 5.84807 6.00250 6.08631 6.54313 7.04892 7.16410 7.49548
8.03070 8.63735
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.017347 B = 0.008914 C = 0.007416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1613.740149 B = 3140.319404 C = 3774.542739
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.128 3.872
3 N -0.432 5.432
4 C -0.335 4.335
5 H 0.071 0.929
6 C -0.001 4.001
7 N -0.872 5.872
8 Si 0.984 3.016
9 H -0.273 1.273
10 H -0.269 1.269
11 H -0.279 1.279
12 C 0.465 3.535
13 O -0.643 6.643
14 C -0.115 4.115
15 C -0.101 4.101
16 C -0.111 4.111
17 C -0.026 4.026
18 C -0.183 4.183
19 C 0.082 3.918
20 N -0.510 5.510
21 C 0.084 3.916
22 C -0.155 4.155
23 H 0.058 0.942
24 H 0.065 0.935
25 H 0.027 0.973
26 H 0.053 0.947
27 H 0.084 0.916
28 H 0.271 0.729
29 H 0.090 0.910
30 H 0.049 0.951
31 H 0.104 0.896
32 H 0.178 0.822
33 H 0.128 0.872
34 H 0.152 0.848
35 H 0.189 0.811
36 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.265 -7.452 -8.809 11.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.006 3.994
3 N -0.147 5.147
4 C -0.463 4.463
5 H 0.089 0.911
6 C -0.203 4.203
7 N -0.512 5.512
8 Si 0.809 3.191
9 H -0.199 1.199
10 H -0.194 1.194
11 H -0.205 1.205
12 C 0.256 3.744
13 O -0.534 6.534
14 C -0.119 4.119
15 C -0.157 4.157
16 C -0.129 4.129
17 C -0.034 4.034
18 C -0.202 4.202
19 C -0.073 4.073
20 N -0.220 5.220
21 C -0.072 4.072
22 C -0.174 4.174
23 H 0.076 0.924
24 H 0.084 0.916
25 H 0.046 0.954
26 H 0.071 0.929
27 H 0.102 0.898
28 H 0.081 0.919
29 H 0.108 0.892
30 H 0.069 0.931
31 H 0.122 0.878
32 H 0.195 0.805
33 H 0.146 0.854
34 H 0.169 0.831
35 H 0.206 0.794
36 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges 1.170 -7.242 -8.148 10.964
hybrid contribution -0.667 1.085 0.769 1.488
sum 0.503 -6.157 -7.379 9.624
Atomic orbital electron populations
1.22107 0.95571 1.00773 1.00546 1.21592 0.95472 0.81834 1.00544
1.43806 1.54154 1.12392 1.04381 1.19600 1.34010 1.06597 0.86106
0.91123 1.25910 0.95306 0.97340 1.01701 1.70203 1.34611 1.17572
1.28807 0.85061 0.78419 0.78086 0.77568 1.19871 1.19367 1.20464
1.18534 0.84365 0.86377 0.85089 1.90578 1.51409 1.23340 1.88055
1.22204 0.99459 0.95523 0.94720 1.20773 0.93802 1.01571 0.99594
1.22191 0.91680 0.97723 1.01303 1.19697 0.94737 0.93759 0.95172
1.23051 0.96786 1.01795 0.98603 1.22639 0.94040 0.94418 0.96231
1.67559 1.35129 1.00298 1.19009 1.23244 0.92425 0.98665 0.92895
1.22634 0.97266 0.96698 1.00846 0.92351 0.91637 0.95391 0.92873
0.89768 0.91851 0.89209 0.93141 0.87787 0.80454 0.85403 0.83089
0.79436 0.80831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.41 9.50 71.98 0.68 -4.73 16
2 C 0.13 5.72 5.22 86.38 0.45 6.17 16
3 N -0.43 -22.08 2.62 -640.38 -1.68 -23.75 16
4 C -0.33 -18.91 9.49 84.17 0.80 -18.11 16
5 H 0.07 4.34 7.21 -2.91 -0.02 4.32 16
6 C 0.00 -0.05 5.33 85.00 0.45 0.40 16
7 N -0.87 -43.53 7.17 21.70 0.16 -43.37 16
8 Si 0.98 42.66 29.55 68.60 2.03 44.68 16
9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16
10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16
12 C 0.47 22.79 4.32 86.37 0.37 23.16 16
13 O -0.64 -36.63 14.74 -4.47 -0.07 -36.69 16
14 C -0.12 -4.21 4.48 -18.51 -0.08 -4.30 16
15 C -0.10 -2.84 10.03 71.23 0.71 -2.13 16
16 C -0.11 -3.35 8.30 23.88 0.20 -3.15 16
17 C -0.03 -0.88 5.07 -19.94 -0.10 -0.98 16
18 C -0.18 -7.51 8.42 22.68 0.19 -7.32 16
19 C 0.08 3.18 11.17 84.62 0.95 4.13 16
20 N -0.51 -18.25 10.34 -196.17 -2.03 -20.28 16
21 C 0.08 2.43 11.17 84.62 0.95 3.37 16
22 C -0.16 -4.26 9.90 22.68 0.22 -4.03 16
23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
24 H 0.07 3.10 5.84 -2.39 -0.01 3.09 16
25 H 0.03 1.05 7.42 -2.38 -0.02 1.03 16
26 H 0.05 2.09 5.40 -2.38 -0.01 2.08 16
27 H 0.08 4.21 5.98 -2.39 -0.01 4.19 16
28 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16
29 H 0.09 2.23 7.43 -2.39 -0.02 2.21 16
30 H 0.05 1.62 8.08 -2.38 -0.02 1.60 16
31 H 0.10 2.15 8.11 -2.39 -0.02 2.13 16
32 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16
33 H 0.13 6.15 4.85 -2.91 -0.01 6.13 16
34 H 0.15 5.51 8.06 -2.91 -0.02 5.48 16
35 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16
36 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16
Total: -1.00 -68.42 297.12 5.29 -63.12
By element:
Atomic # 1 Polarization: 22.72 SS G_CDS: 1.09 Total: 23.81 kcal
Atomic # 6 Polarization: -13.31 SS G_CDS: 5.79 Total: -7.52 kcal
Atomic # 7 Polarization: -83.85 SS G_CDS: -3.55 Total: -87.40 kcal
Atomic # 8 Polarization: -36.63 SS G_CDS: -0.07 Total: -36.69 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal
Total: -68.42 5.29 -63.12 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000846839118.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.477 kcal
(2) G-P(sol) polarization free energy of solvation -68.417 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds