Wall clock time and date at job start Mon Mar 30 2020 04:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47520 * 2 1 4 4 C 1.36639 * 119.99819 * 85.88797 * 3 2 1 5 5 H 1.07999 * 119.99651 * 167.23494 * 4 3 2 6 6 C 1.39186 * 120.00131 * 347.23570 * 4 3 2 7 7 N 1.31277 * 119.99798 * 1.85628 * 6 4 3 8 8 Si 1.86796 * 119.99985 * 181.85584 * 6 4 3 9 9 H 1.48500 * 109.47258 * 89.99868 * 8 6 4 10 10 H 1.48494 * 109.47235 * 210.00253 * 8 6 4 11 11 H 1.48503 * 109.46925 * 330.00130 * 8 6 4 12 12 C 1.34774 * 119.99868 * 265.89634 * 3 2 1 13 13 O 1.21739 * 119.99679 * 185.20357 * 12 3 2 14 14 C 1.46419 * 120.00494 * 5.19456 * 12 3 2 15 15 C 1.50694 * 119.99935 * 101.09966 * 14 12 3 16 16 C 1.34842 * 120.00047 * 281.10803 * 14 12 3 17 17 C 1.47307 * 120.00109 * 352.87250 * 16 14 12 18 18 C 1.40201 * 120.95062 * 325.84106 * 17 16 14 19 19 C 1.37965 * 118.95878 * 179.72873 * 18 17 16 20 20 N 1.31903 * 120.93079 * 0.25002 * 19 18 17 21 21 C 1.31902 * 122.12447 * 359.97438 * 20 19 18 22 22 C 1.37965 * 120.92775 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47473 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46859 * 300.00297 * 1 2 3 25 25 H 1.09006 * 109.46609 * 59.99988 * 1 2 3 26 26 H 1.09004 * 109.46555 * 239.99794 * 2 1 3 27 27 H 1.08999 * 109.46578 * 120.00424 * 2 1 3 28 28 H 0.97001 * 119.99801 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47422 * 264.93801 * 15 14 12 30 30 H 1.09004 * 109.47126 * 24.93491 * 15 14 12 31 31 H 1.08998 * 109.47322 * 144.93663 * 15 14 12 32 32 H 1.08001 * 119.99846 * 172.87337 * 16 14 12 33 33 H 1.08000 * 120.52176 * 0.02562 * 18 17 16 34 34 H 1.08004 * 119.53739 * 180.22918 * 19 18 17 35 35 H 1.08004 * 119.53418 * 180.02562 * 21 20 19 36 36 H 1.08004 * 120.51567 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1662 2.0535 1.1803 5 1 2.7132 2.9844 1.2066 6 6 1.6119 1.5387 2.3486 7 7 0.9784 0.3892 2.3235 8 14 1.7693 2.4836 3.9523 9 1 0.6113 3.4011 4.1020 10 1 1.7944 1.5286 5.0891 11 1 3.0275 3.2723 3.9406 12 6 2.3219 1.9886 -1.1642 13 8 2.8166 3.1009 -1.1595 14 6 2.0567 1.3107 -2.4346 15 6 0.8421 1.6800 -3.2466 16 6 2.8993 0.3559 -2.8780 17 6 4.1654 0.1035 -2.1686 18 6 4.8707 1.1500 -1.5579 19 6 6.0495 0.8662 -0.8995 20 7 6.5156 -0.3665 -0.8446 21 6 5.8872 -1.3797 -1.4086 22 6 4.7017 -1.1893 -2.0882 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.5924 0.0303 3.1378 29 1 0.0263 0.9964 -3.0115 30 1 0.5416 2.7001 -3.0074 31 1 1.0798 1.6106 -4.3081 32 1 2.6459 -0.2238 -3.7533 33 1 4.4948 2.1617 -1.5981 34 1 6.5985 1.6647 -0.4226 35 1 6.3065 -2.3725 -1.3375 36 1 4.1924 -2.0238 -2.5472 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846839118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:00 Heat of formation + Delta-G solvation = 20.352529 kcal Electronic energy + Delta-G solvation = -20093.498882 eV Core-core repulsion = 17157.330852 eV Total energy + Delta-G solvation = -2936.168030 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37839 -40.25175 -37.18822 -36.08920 -33.59767 -32.89195 -32.07655 -31.23192 -28.17481 -27.21828 -24.71639 -24.03082 -23.74850 -22.66570 -19.71525 -18.80429 -18.18906 -17.33747 -17.01875 -16.74653 -16.07378 -15.74394 -15.64822 -14.84784 -14.75364 -14.62645 -14.38592 -14.21415 -14.09338 -13.40301 -13.26105 -13.13356 -12.89080 -12.83640 -12.62131 -12.31376 -12.17778 -11.97646 -11.86567 -11.21505 -10.75176 -10.49519 -10.34944 -10.04476 -9.67705 -9.35415 -8.20654 -5.90368 -0.15635 0.27146 1.21922 1.34659 1.39160 1.49746 1.97783 2.25992 2.95418 3.06746 3.16853 3.57702 3.66524 3.91529 4.01378 4.20706 4.31021 4.45326 4.49768 4.62941 4.74416 4.76910 4.90152 4.94440 4.99244 5.00372 5.10938 5.17310 5.31042 5.36434 5.40724 5.61251 5.69614 5.84807 6.00250 6.08631 6.54313 7.04892 7.16410 7.49548 8.03070 8.63735 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.008914 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.740149 B = 3140.319404 C = 3774.542739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.128 3.872 3 N -0.432 5.432 4 C -0.335 4.335 5 H 0.071 0.929 6 C -0.001 4.001 7 N -0.872 5.872 8 Si 0.984 3.016 9 H -0.273 1.273 10 H -0.269 1.269 11 H -0.279 1.279 12 C 0.465 3.535 13 O -0.643 6.643 14 C -0.115 4.115 15 C -0.101 4.101 16 C -0.111 4.111 17 C -0.026 4.026 18 C -0.183 4.183 19 C 0.082 3.918 20 N -0.510 5.510 21 C 0.084 3.916 22 C -0.155 4.155 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.027 0.973 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.271 0.729 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.189 0.811 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -7.452 -8.809 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.006 3.994 3 N -0.147 5.147 4 C -0.463 4.463 5 H 0.089 0.911 6 C -0.203 4.203 7 N -0.512 5.512 8 Si 0.809 3.191 9 H -0.199 1.199 10 H -0.194 1.194 11 H -0.205 1.205 12 C 0.256 3.744 13 O -0.534 6.534 14 C -0.119 4.119 15 C -0.157 4.157 16 C -0.129 4.129 17 C -0.034 4.034 18 C -0.202 4.202 19 C -0.073 4.073 20 N -0.220 5.220 21 C -0.072 4.072 22 C -0.174 4.174 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.195 0.805 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.206 0.794 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.170 -7.242 -8.148 10.964 hybrid contribution -0.667 1.085 0.769 1.488 sum 0.503 -6.157 -7.379 9.624 Atomic orbital electron populations 1.22107 0.95571 1.00773 1.00546 1.21592 0.95472 0.81834 1.00544 1.43806 1.54154 1.12392 1.04381 1.19600 1.34010 1.06597 0.86106 0.91123 1.25910 0.95306 0.97340 1.01701 1.70203 1.34611 1.17572 1.28807 0.85061 0.78419 0.78086 0.77568 1.19871 1.19367 1.20464 1.18534 0.84365 0.86377 0.85089 1.90578 1.51409 1.23340 1.88055 1.22204 0.99459 0.95523 0.94720 1.20773 0.93802 1.01571 0.99594 1.22191 0.91680 0.97723 1.01303 1.19697 0.94737 0.93759 0.95172 1.23051 0.96786 1.01795 0.98603 1.22639 0.94040 0.94418 0.96231 1.67559 1.35129 1.00298 1.19009 1.23244 0.92425 0.98665 0.92895 1.22634 0.97266 0.96698 1.00846 0.92351 0.91637 0.95391 0.92873 0.89768 0.91851 0.89209 0.93141 0.87787 0.80454 0.85403 0.83089 0.79436 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 9.50 71.98 0.68 -4.73 16 2 C 0.13 5.72 5.22 86.38 0.45 6.17 16 3 N -0.43 -22.08 2.62 -640.38 -1.68 -23.75 16 4 C -0.33 -18.91 9.49 84.17 0.80 -18.11 16 5 H 0.07 4.34 7.21 -2.91 -0.02 4.32 16 6 C 0.00 -0.05 5.33 85.00 0.45 0.40 16 7 N -0.87 -43.53 7.17 21.70 0.16 -43.37 16 8 Si 0.98 42.66 29.55 68.60 2.03 44.68 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.47 22.79 4.32 86.37 0.37 23.16 16 13 O -0.64 -36.63 14.74 -4.47 -0.07 -36.69 16 14 C -0.12 -4.21 4.48 -18.51 -0.08 -4.30 16 15 C -0.10 -2.84 10.03 71.23 0.71 -2.13 16 16 C -0.11 -3.35 8.30 23.88 0.20 -3.15 16 17 C -0.03 -0.88 5.07 -19.94 -0.10 -0.98 16 18 C -0.18 -7.51 8.42 22.68 0.19 -7.32 16 19 C 0.08 3.18 11.17 84.62 0.95 4.13 16 20 N -0.51 -18.25 10.34 -196.17 -2.03 -20.28 16 21 C 0.08 2.43 11.17 84.62 0.95 3.37 16 22 C -0.16 -4.26 9.90 22.68 0.22 -4.03 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 3.10 5.84 -2.39 -0.01 3.09 16 25 H 0.03 1.05 7.42 -2.38 -0.02 1.03 16 26 H 0.05 2.09 5.40 -2.38 -0.01 2.08 16 27 H 0.08 4.21 5.98 -2.39 -0.01 4.19 16 28 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 29 H 0.09 2.23 7.43 -2.39 -0.02 2.21 16 30 H 0.05 1.62 8.08 -2.38 -0.02 1.60 16 31 H 0.10 2.15 8.11 -2.39 -0.02 2.13 16 32 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.13 6.15 4.85 -2.91 -0.01 6.13 16 34 H 0.15 5.51 8.06 -2.91 -0.02 5.48 16 35 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -68.42 297.12 5.29 -63.12 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 1.09 Total: 23.81 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.79 Total: -7.52 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -3.55 Total: -87.40 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.07 Total: -36.69 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -68.42 5.29 -63.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846839118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.477 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds