Wall clock time and date at job start Mon Mar 30 2020 04:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34633 * 120.00240 * 2 1 4 4 C 1.47400 * 119.99977 * 352.84034 * 3 2 1 5 5 C 1.40136 * 120.95048 * 324.01452 * 4 3 2 6 6 C 1.38000 * 118.96566 * 179.72996 * 5 4 3 7 7 N 1.31885 * 120.92784 * 0.54919 * 6 5 4 8 8 C 1.31890 * 122.10985 * 359.72485 * 7 6 5 9 9 C 1.37992 * 120.92530 * 359.97438 * 8 7 6 10 10 C 1.46661 * 119.99859 * 179.97438 * 2 1 3 11 11 O 1.21664 * 120.00013 * 180.02562 * 10 2 1 12 12 N 1.34777 * 119.99939 * 0.02562 * 10 2 1 13 13 C 1.46496 * 120.00093 * 179.97438 * 12 10 2 14 14 C 1.53002 * 109.47169 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46923 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00208 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99703 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99878 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00096 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47034 * 90.00419 * 19 17 15 21 21 H 1.48502 * 109.47155 * 210.00265 * 19 17 15 22 22 H 1.48496 * 109.47298 * 330.00499 * 19 17 15 23 23 H 1.09001 * 109.46863 * 85.89534 * 1 2 3 24 24 H 1.08993 * 109.47410 * 205.89751 * 1 2 3 25 25 H 1.08997 * 109.47011 * 325.90052 * 1 2 3 26 26 H 1.08004 * 119.99814 * 172.84187 * 3 2 1 27 27 H 1.08003 * 120.51423 * 359.97272 * 5 4 3 28 28 H 1.08003 * 119.53886 * 180.25442 * 6 5 4 29 29 H 1.08001 * 119.53269 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.51839 * 179.97438 * 9 8 7 31 31 H 0.97007 * 119.99618 * 0.02562 * 12 10 2 32 32 H 1.08999 * 109.47214 * 300.00715 * 13 12 10 33 33 H 1.09005 * 109.47032 * 60.00672 * 13 12 10 34 34 H 1.08995 * 109.47058 * 300.00165 * 14 13 12 35 35 H 1.09005 * 109.46727 * 60.00323 * 14 13 12 36 36 H 0.96996 * 120.00143 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1802 1.1659 0.0000 4 6 1.4519 2.4375 -0.1591 5 6 0.3331 2.5271 -0.9982 6 6 -0.3214 3.7366 -1.1124 7 7 0.0988 4.7996 -0.4544 8 6 1.1501 4.7613 0.3412 9 6 1.8617 3.5927 0.5203 10 6 2.2403 -1.2701 0.0006 11 8 3.4569 -1.2702 0.0010 12 7 1.5664 -2.4373 0.0006 13 6 2.2988 -3.7060 0.0006 14 6 1.3045 -4.8689 -0.0001 15 6 2.0580 -6.1740 0.0006 16 1 3.1380 -6.1741 0.0009 17 6 1.3685 -7.3681 -0.0004 18 7 2.0261 -8.5071 -0.0004 19 14 -0.4994 -7.3680 -0.0018 20 1 -0.9934 -7.3676 -1.4023 21 1 -0.9950 -8.5807 0.6975 22 1 -0.9949 -6.1557 0.6983 23 1 -0.3633 0.0736 -1.0251 24 1 -0.3634 -0.9244 0.4488 25 1 -0.3633 0.8510 0.5761 26 1 3.2540 1.1695 0.1166 27 1 -0.0139 1.6621 -1.5438 28 1 -1.1872 3.8151 -1.7533 29 1 1.4581 5.6572 0.8597 30 1 2.7218 3.5689 1.1730 31 1 0.5963 -2.4372 -0.0002 32 1 2.9255 -3.7638 -0.8893 33 1 2.9254 -3.7639 0.8907 34 1 0.6775 -4.8113 0.8896 35 1 0.6782 -4.8109 -0.8904 36 1 1.5411 -9.3471 -0.0006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846956757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:34 Heat of formation + Delta-G solvation = 6.153361 kcal Electronic energy + Delta-G solvation = -17985.012330 eV Core-core repulsion = 15048.228578 eV Total energy + Delta-G solvation = -2936.783752 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54010 -39.49133 -35.85557 -35.07414 -32.93471 -32.05917 -31.40875 -30.03935 -27.78396 -25.51334 -23.90634 -23.62912 -21.61025 -20.84354 -19.03628 -17.21826 -16.97202 -16.61493 -16.26872 -16.02848 -15.38162 -15.13345 -14.29958 -14.23830 -14.16351 -13.79054 -13.59966 -13.29626 -12.92406 -12.66393 -12.55546 -12.18062 -11.82090 -11.50661 -11.26109 -10.60452 -10.44266 -10.34861 -10.00970 -9.85570 -9.62571 -9.47970 -9.35561 -8.97189 -8.67593 -8.56862 -6.14353 -4.14816 0.31302 0.80969 1.64983 3.22255 3.29860 3.31046 3.32726 3.45480 3.55056 4.12797 4.33201 4.34405 4.47220 4.62761 4.70560 4.79806 4.88305 5.15864 5.18372 5.25832 5.33966 5.48921 5.56725 5.67656 5.76354 5.99938 6.14645 6.17454 6.22697 6.34237 6.50181 6.65349 7.07605 7.17738 7.62313 7.64182 7.80127 8.38348 8.45474 8.89845 9.45472 10.98676 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.003296 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.330294 B = 8493.518336 C = 9019.523128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.142 4.142 3 C -0.061 4.061 4 C -0.013 4.013 5 C -0.163 4.163 6 C 0.097 3.903 7 N -0.488 5.488 8 C 0.097 3.903 9 C -0.158 4.158 10 C 0.542 3.458 11 O -0.545 6.545 12 N -0.718 5.718 13 C 0.128 3.872 14 C -0.022 4.022 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.266 1.266 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.139 0.861 31 H 0.397 0.603 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 23.927 -0.246 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C -0.081 4.081 4 C -0.021 4.021 5 C -0.183 4.183 6 C -0.059 4.059 7 N -0.197 5.197 8 C -0.059 4.059 9 C -0.178 4.178 10 C 0.329 3.671 11 O -0.424 6.424 12 N -0.368 5.368 13 C 0.006 3.994 14 C -0.060 4.060 15 C -0.562 4.562 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.191 1.191 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.174 0.826 30 H 0.157 0.843 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.955 24.459 -0.339 25.175 hybrid contribution -0.907 -1.075 0.106 1.411 sum -6.863 23.383 -0.233 24.371 Atomic orbital electron populations 1.21139 0.91002 1.03486 1.02723 1.22005 0.96436 0.93335 1.02786 1.22100 1.00291 0.89422 0.96296 1.19394 0.94103 0.93538 0.95088 1.22677 0.95868 1.00120 0.99614 1.22722 0.98784 0.87941 0.96459 1.67590 1.13762 1.31420 1.06941 1.22699 0.90949 0.97472 0.94808 1.22388 1.01664 0.93054 1.00675 1.18118 0.87374 0.84090 0.77517 1.90802 1.13416 1.87785 1.50442 1.46306 1.10560 1.06623 1.73288 1.21565 0.95536 0.80449 1.01819 1.19799 0.95423 0.93911 0.96852 1.20908 0.95272 0.88248 1.51791 0.90588 1.25007 0.98523 0.95417 0.94341 1.69902 1.35906 0.97489 1.50294 0.86748 0.86006 0.77780 0.78518 1.20194 1.21231 1.19095 0.90246 0.91059 0.90606 0.83939 0.83809 0.82560 0.82597 0.84318 0.76821 0.91750 0.91717 0.95979 0.96407 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 7.92 36.01 0.29 -0.82 16 2 C -0.14 -1.68 5.94 -102.50 -0.61 -2.29 16 3 C -0.06 -0.67 9.39 -37.13 -0.35 -1.02 16 4 C -0.01 -0.12 5.20 -104.74 -0.54 -0.67 16 5 C -0.16 -1.36 7.92 -38.96 -0.31 -1.67 16 6 C 0.10 0.81 11.17 -17.62 -0.20 0.62 16 7 N -0.49 -4.79 10.34 -13.35 -0.14 -4.93 16 8 C 0.10 0.81 11.17 -17.62 -0.20 0.61 16 9 C -0.16 -1.31 9.90 -38.96 -0.39 -1.70 16 10 C 0.54 8.73 7.74 -12.86 -0.10 8.63 16 11 O -0.54 -10.83 16.25 5.22 0.08 -10.75 16 12 N -0.72 -11.58 5.50 -61.63 -0.34 -11.91 16 13 C 0.13 2.58 5.61 -4.04 -0.02 2.55 16 14 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 15 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 16 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 19 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 23 H 0.08 0.56 6.49 -51.93 -0.34 0.22 16 24 H 0.07 0.60 6.50 -51.93 -0.34 0.26 16 25 H 0.08 0.61 6.67 -51.93 -0.35 0.26 16 26 H 0.14 1.65 7.54 -52.48 -0.40 1.26 16 27 H 0.14 0.99 5.49 -52.48 -0.29 0.70 16 28 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 31 H 0.40 5.29 6.47 -40.82 -0.26 5.03 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 306.19 15.07 4.61 4.61 Total: -1.00 -33.22 306.19 -7.08 -40.30 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.44 Total: 2.29 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.97 Total: -9.35 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.30 Total: -43.19 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.22 -7.08 -40.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846956757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.454 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds