Wall clock time and date at job start Mon Mar 30 2020 04:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34633 * 120.00240 * 2 1 4 4 C 1.47400 * 119.99977 * 352.84034 * 3 2 1 5 5 C 1.40136 * 120.95048 * 324.01452 * 4 3 2 6 6 C 1.38000 * 118.96566 * 179.72996 * 5 4 3 7 7 N 1.31885 * 120.92784 * 0.54919 * 6 5 4 8 8 C 1.31890 * 122.10985 * 359.72485 * 7 6 5 9 9 C 1.37992 * 120.92530 * 359.97438 * 8 7 6 10 10 C 1.46661 * 119.99859 * 179.97438 * 2 1 3 11 11 O 1.21664 * 120.00013 * 180.02562 * 10 2 1 12 12 N 1.34777 * 119.99939 * 0.02562 * 10 2 1 13 13 C 1.46496 * 120.00093 * 179.97438 * 12 10 2 14 14 C 1.53002 * 109.47169 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46923 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00208 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99703 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99878 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00096 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47034 * 90.00419 * 19 17 15 21 21 H 1.48502 * 109.47155 * 210.00265 * 19 17 15 22 22 H 1.48496 * 109.47298 * 330.00499 * 19 17 15 23 23 H 1.09001 * 109.46863 * 85.89534 * 1 2 3 24 24 H 1.08993 * 109.47410 * 205.89751 * 1 2 3 25 25 H 1.08997 * 109.47011 * 325.90052 * 1 2 3 26 26 H 1.08004 * 119.99814 * 172.84187 * 3 2 1 27 27 H 1.08003 * 120.51423 * 359.97272 * 5 4 3 28 28 H 1.08003 * 119.53886 * 180.25442 * 6 5 4 29 29 H 1.08001 * 119.53269 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.51839 * 179.97438 * 9 8 7 31 31 H 0.97007 * 119.99618 * 0.02562 * 12 10 2 32 32 H 1.08999 * 109.47214 * 300.00715 * 13 12 10 33 33 H 1.09005 * 109.47032 * 60.00672 * 13 12 10 34 34 H 1.08995 * 109.47058 * 300.00165 * 14 13 12 35 35 H 1.09005 * 109.46727 * 60.00323 * 14 13 12 36 36 H 0.96996 * 120.00143 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1802 1.1659 0.0000 4 6 1.4519 2.4375 -0.1591 5 6 0.3331 2.5271 -0.9982 6 6 -0.3214 3.7366 -1.1124 7 7 0.0988 4.7996 -0.4544 8 6 1.1501 4.7613 0.3412 9 6 1.8617 3.5927 0.5203 10 6 2.2403 -1.2701 0.0006 11 8 3.4569 -1.2702 0.0010 12 7 1.5664 -2.4373 0.0006 13 6 2.2988 -3.7060 0.0006 14 6 1.3045 -4.8689 -0.0001 15 6 2.0580 -6.1740 0.0006 16 1 3.1380 -6.1741 0.0009 17 6 1.3685 -7.3681 -0.0004 18 7 2.0261 -8.5071 -0.0004 19 14 -0.4994 -7.3680 -0.0018 20 1 -0.9934 -7.3676 -1.4023 21 1 -0.9950 -8.5807 0.6975 22 1 -0.9949 -6.1557 0.6983 23 1 -0.3633 0.0736 -1.0251 24 1 -0.3634 -0.9244 0.4488 25 1 -0.3633 0.8510 0.5761 26 1 3.2540 1.1695 0.1166 27 1 -0.0139 1.6621 -1.5438 28 1 -1.1872 3.8151 -1.7533 29 1 1.4581 5.6572 0.8597 30 1 2.7218 3.5689 1.1730 31 1 0.5963 -2.4372 -0.0002 32 1 2.9255 -3.7638 -0.8893 33 1 2.9254 -3.7639 0.8907 34 1 0.6775 -4.8113 0.8896 35 1 0.6782 -4.8109 -0.8904 36 1 1.5411 -9.3471 -0.0006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846956757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:33 Heat of formation + Delta-G solvation = -16.695027 kcal Electronic energy + Delta-G solvation = -17986.003111 eV Core-core repulsion = 15048.228578 eV Total energy + Delta-G solvation = -2937.774533 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30913 -40.65908 -36.89575 -36.50941 -34.84760 -32.97369 -32.18685 -31.58708 -28.53747 -27.16171 -24.98869 -24.24162 -22.91643 -22.37745 -20.16920 -18.99590 -18.16498 -17.38992 -17.20048 -16.69163 -16.59824 -16.47170 -16.20352 -15.28756 -15.10985 -14.80731 -14.68557 -14.58807 -14.20618 -13.74858 -13.43117 -13.26315 -13.06205 -12.93250 -12.46749 -12.22274 -12.18187 -11.76519 -11.53050 -11.33216 -11.03259 -10.79325 -10.44300 -10.17327 -10.07487 -9.67417 -8.30530 -6.38243 -0.48658 0.21738 0.80169 1.39298 1.42196 1.53330 2.16005 2.20389 2.36816 2.89951 3.04563 3.45565 3.61260 3.80949 3.86644 3.97329 4.13784 4.21118 4.28772 4.39796 4.54141 4.63833 4.72483 4.77114 4.84369 4.93591 5.05271 5.05773 5.10154 5.33494 5.38360 5.40920 5.44796 5.62308 5.74881 6.21057 6.54083 6.69998 7.03357 7.17859 7.26497 8.86316 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.003296 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.330294 B = 8493.518336 C = 9019.523128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.152 4.152 3 C -0.045 4.045 4 C -0.030 4.030 5 C -0.159 4.159 6 C 0.091 3.909 7 N -0.510 5.510 8 C 0.090 3.910 9 C -0.159 4.159 10 C 0.540 3.460 11 O -0.592 6.592 12 N -0.708 5.708 13 C 0.143 3.857 14 C -0.013 4.013 15 C -0.541 4.541 16 H 0.028 0.972 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.960 3.040 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.235 1.235 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.179 0.821 30 H 0.153 0.847 31 H 0.414 0.586 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 26.091 -0.412 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C -0.065 4.065 4 C -0.038 4.038 5 C -0.178 4.178 6 C -0.065 4.065 7 N -0.220 5.220 8 C -0.065 4.065 9 C -0.178 4.178 10 C 0.330 3.670 11 O -0.475 6.475 12 N -0.359 5.359 13 C 0.019 3.981 14 C -0.050 4.050 15 C -0.579 4.579 16 H 0.046 0.954 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.158 1.158 23 H 0.118 0.882 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.147 0.853 27 H 0.178 0.822 28 H 0.198 0.802 29 H 0.196 0.804 30 H 0.171 0.829 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.203 26.661 -0.504 28.210 hybrid contribution 0.252 -1.675 0.156 1.701 sum -8.951 24.986 -0.348 26.543 Atomic orbital electron populations 1.21192 0.88194 1.04186 1.04300 1.21835 0.98016 0.90946 1.04789 1.22132 0.99860 0.90170 0.94322 1.19383 0.94934 0.92969 0.96491 1.22851 0.95109 1.00771 0.99053 1.23144 0.99393 0.87534 0.96403 1.67631 1.14456 1.32298 1.07568 1.23089 0.90547 0.98289 0.94621 1.22596 1.01983 0.92723 1.00532 1.18786 0.87008 0.85245 0.76003 1.90780 1.15684 1.88491 1.52507 1.46023 1.11285 1.05262 1.73337 1.21080 0.94994 0.81934 1.00111 1.19655 0.95444 0.91736 0.98196 1.21254 0.93744 0.91231 1.51663 0.95370 1.26108 1.05068 0.94596 0.93624 1.70080 1.38616 0.98500 1.51920 0.85528 0.77991 0.78899 0.79397 1.18882 1.21344 1.15784 0.88160 0.90567 0.89634 0.85298 0.82211 0.80207 0.80397 0.82898 0.74738 0.93618 0.93677 0.94384 0.94428 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 7.92 71.24 0.56 -1.14 16 2 C -0.15 -3.34 5.94 -18.49 -0.11 -3.44 16 3 C -0.05 -0.93 9.39 23.86 0.22 -0.71 16 4 C -0.03 -0.49 5.20 -19.94 -0.10 -0.60 16 5 C -0.16 -2.18 7.92 22.67 0.18 -2.00 16 6 C 0.09 1.27 11.17 84.63 0.95 2.21 16 7 N -0.51 -8.81 10.34 -196.14 -2.03 -10.84 16 8 C 0.09 1.30 11.17 84.63 0.95 2.25 16 9 C -0.16 -2.31 9.90 22.67 0.22 -2.09 16 10 C 0.54 17.10 7.74 86.44 0.67 17.77 16 11 O -0.59 -24.11 16.25 -4.23 -0.07 -24.17 16 12 N -0.71 -21.92 5.50 -467.13 -2.57 -24.49 16 13 C 0.14 5.77 5.61 86.38 0.48 6.26 16 14 C -0.01 -0.55 4.16 29.85 0.12 -0.43 16 15 C -0.54 -30.65 9.66 25.60 0.25 -30.40 16 16 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 19 Si 0.96 41.60 27.47 68.60 1.88 43.48 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16 23 H 0.10 0.98 6.49 -2.39 -0.02 0.96 16 24 H 0.08 0.99 6.50 -2.39 -0.02 0.97 16 25 H 0.08 1.06 6.67 -2.39 -0.02 1.05 16 26 H 0.13 2.99 7.54 -2.91 -0.02 2.97 16 27 H 0.16 1.61 5.49 -2.91 -0.02 1.60 16 28 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.41 9.85 6.47 -92.70 -0.60 9.25 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 35 H 0.04 1.51 7.57 -2.38 -0.02 1.49 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.66 306.19 2.82 -71.85 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.44 Total: 14.63 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.86 Total: -11.68 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -4.30 Total: -94.10 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.07 Total: -24.17 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.48 kcal Total: -74.66 2.82 -71.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846956757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.150 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds