Wall clock time and date at job start Mon Mar 30 2020 04:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34800 * 120.00188 * 2 1 4 4 C 1.47212 * 119.99822 * 168.64903 * 3 2 1 5 5 C 1.40263 * 120.58490 * 132.40028 * 4 3 2 6 6 C 1.38284 * 118.26917 * 179.97438 * 5 4 3 7 7 C 1.38395 * 119.33315 * 359.97438 * 6 5 4 8 8 N 1.31944 * 121.13668 * 0.02562 * 7 6 5 9 9 C 1.31655 * 121.90363 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99424 * 180.02562 * 2 1 3 11 11 O 1.21700 * 119.99554 * 172.96788 * 10 2 1 12 12 N 1.34773 * 120.00708 * 352.96896 * 10 2 1 13 13 C 1.46496 * 120.00560 * 180.02562 * 12 10 2 14 14 C 1.52999 * 109.47295 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.47112 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99545 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99508 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99863 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47240 * 89.99913 * 19 17 15 21 21 H 1.48505 * 109.47149 * 209.99800 * 19 17 15 22 22 H 1.48505 * 109.47476 * 329.99833 * 19 17 15 23 23 H 1.08995 * 109.47381 * 89.99623 * 1 2 3 24 24 H 1.09006 * 109.47125 * 209.99801 * 1 2 3 25 25 H 1.08998 * 109.46758 * 329.99486 * 1 2 3 26 26 H 1.07999 * 120.00102 * 348.65642 * 3 2 1 27 27 H 1.08007 * 120.86797 * 359.97438 * 5 4 3 28 28 H 1.08004 * 120.33693 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.43200 * 179.97438 * 7 6 5 30 30 H 1.08007 * 119.73313 * 180.28296 * 9 8 7 31 31 H 0.97002 * 119.99349 * 359.97438 * 12 10 2 32 32 H 1.09007 * 109.46931 * 299.99731 * 13 12 10 33 33 H 1.09003 * 109.47421 * 59.99532 * 13 12 10 34 34 H 1.08998 * 109.46819 * 299.99238 * 14 13 12 35 35 H 1.08999 * 109.47422 * 59.99948 * 14 13 12 36 36 H 0.97007 * 119.99571 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6316 1.1798 0.2509 5 6 4.4937 1.9082 -0.5818 6 6 5.8477 1.8869 -0.3018 7 6 6.3048 1.1553 0.7805 8 7 5.4713 0.4788 1.5476 9 6 4.1739 0.4665 1.3240 10 6 2.2390 -1.2682 -0.0006 11 8 3.4491 -1.2721 -0.1296 12 7 1.5728 -2.4310 0.1418 13 6 2.3052 -3.6997 0.1418 14 6 1.3204 -4.8572 0.3183 15 6 2.0740 -6.1623 0.3189 16 1 3.1479 -6.1658 0.2044 17 6 1.3923 -7.3520 0.4647 18 7 0.0846 -7.3476 0.6036 19 14 2.3263 -8.9696 0.4647 20 1 2.7218 -9.3128 1.8544 21 1 1.4576 -10.0428 -0.0821 22 1 3.5421 -8.8393 -0.3781 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6569 2.0936 -0.1840 27 1 4.1100 2.4712 -1.4199 28 1 6.5415 2.4362 -0.9209 29 1 7.3620 1.1372 1.0003 30 1 3.5230 -0.0957 1.9772 31 1 0.6083 -2.4278 0.2450 32 1 2.8345 -3.8137 -0.8043 33 1 3.0226 -3.7052 0.9624 34 1 0.7915 -4.7431 1.2646 35 1 0.6027 -4.8521 -0.5020 36 1 -0.3950 -8.1845 0.7066 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846960919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:24 Heat of formation + Delta-G solvation = 6.418343 kcal Electronic energy + Delta-G solvation = -18509.762209 eV Core-core repulsion = 15572.989948 eV Total energy + Delta-G solvation = -2936.772262 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28140 -39.07519 -35.25785 -34.67745 -32.96751 -32.27621 -31.19637 -29.45522 -26.94650 -25.17943 -23.60275 -23.08116 -21.96791 -20.81633 -18.95956 -17.28580 -16.54419 -16.36795 -16.12990 -15.35064 -14.92390 -14.67329 -14.37447 -13.98114 -13.51638 -13.46262 -13.24173 -13.00981 -12.72271 -12.52559 -12.44525 -12.28490 -11.55552 -11.19295 -11.03899 -10.64495 -10.35130 -10.13754 -9.83448 -9.54760 -9.52860 -9.30324 -9.09374 -8.52824 -8.34211 -8.17433 -6.09973 -4.12644 0.68417 1.43683 1.76682 3.29684 3.35653 3.39872 3.50601 3.70696 3.98670 4.41876 4.47977 4.72077 4.85611 4.94374 4.97486 5.03430 5.24070 5.27310 5.33949 5.48878 5.56234 5.77279 5.85260 6.03941 6.13425 6.21350 6.33297 6.34000 6.44596 6.72906 6.80966 6.89559 7.50451 7.60162 7.88218 7.99367 8.15069 8.27117 8.62432 8.93213 9.52310 11.01683 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.004155 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.519831 B = 6738.022357 C = 7574.347491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.159 4.159 3 C -0.050 4.050 4 C -0.102 4.102 5 C -0.066 4.066 6 C -0.184 4.184 7 C 0.097 3.903 8 N -0.489 5.489 9 C 0.170 3.830 10 C 0.533 3.467 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.121 3.879 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.397 0.603 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 20.246 -1.526 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.162 4.162 3 C -0.071 4.071 4 C -0.104 4.104 5 C -0.092 4.092 6 C -0.204 4.204 7 C -0.058 4.058 8 N -0.198 5.198 9 C 0.012 3.988 10 C 0.320 3.680 11 O -0.419 6.419 12 N -0.363 5.363 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.232 0.768 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.381 19.588 -0.895 19.898 hybrid contribution -0.456 -0.598 -0.837 1.125 sum 2.925 18.990 -1.732 19.292 Atomic orbital electron populations 1.20828 0.90347 1.03370 1.02914 1.22091 0.96579 0.93342 1.04206 1.21976 0.91994 0.97163 0.95928 1.19821 0.93870 0.99118 0.97638 1.21542 0.93236 0.96731 0.97689 1.21905 0.96110 1.02615 0.99790 1.22723 0.99463 0.92452 0.91189 1.67582 1.04096 1.18194 1.29879 1.22713 0.91091 0.91175 0.93857 1.18262 0.87474 0.84350 0.77876 1.90852 1.13597 1.87279 1.50127 1.46370 1.11345 1.06893 1.71725 1.21740 0.96038 0.81435 1.00868 1.19326 0.94265 0.91225 0.97674 1.21049 0.93892 0.90605 1.50459 0.92269 1.24987 0.94890 0.99391 0.94965 1.69954 1.06684 1.27079 1.49620 0.86513 0.79754 0.82926 0.78379 1.20517 1.21154 1.19732 0.90685 0.90846 0.90883 0.84650 0.85272 0.85229 0.83329 0.83843 0.76785 0.92558 0.92405 0.95933 0.95977 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.75 36.01 0.35 -0.71 16 2 C -0.16 -1.97 5.89 -102.55 -0.60 -2.57 16 3 C -0.05 -0.56 9.43 -37.16 -0.35 -0.91 16 4 C -0.10 -1.38 4.36 -104.91 -0.46 -1.84 16 5 C -0.07 -0.78 9.95 -38.80 -0.39 -1.17 16 6 C -0.18 -2.10 10.09 -39.51 -0.40 -2.50 16 7 C 0.10 1.28 11.17 -17.45 -0.19 1.08 16 8 N -0.49 -7.92 10.34 -12.83 -0.13 -8.05 16 9 C 0.17 2.68 7.96 -17.05 -0.14 2.54 16 10 C 0.53 9.01 6.92 -12.97 -0.09 8.92 16 11 O -0.54 -10.89 12.49 5.19 0.06 -10.83 16 12 N -0.71 -12.46 5.51 -61.70 -0.34 -12.80 16 13 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 19 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.67 6.46 -51.93 -0.34 0.33 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.09 16 26 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 30 H 0.14 2.27 7.45 -52.48 -0.39 1.88 16 31 H 0.40 6.00 6.46 -40.82 -0.26 5.74 16 32 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -33.20 310.73 -7.61 -40.81 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.76 Total: 2.81 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.84 Total: -7.71 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.26 Total: -46.26 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.83 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.20 -7.61 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846960919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.224 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds