Wall clock time and date at job start Mon Mar 30 2020 04:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34800 * 120.00188 * 2 1 4 4 C 1.47212 * 119.99822 * 168.64903 * 3 2 1 5 5 C 1.40263 * 120.58490 * 132.40028 * 4 3 2 6 6 C 1.38284 * 118.26917 * 179.97438 * 5 4 3 7 7 C 1.38395 * 119.33315 * 359.97438 * 6 5 4 8 8 N 1.31944 * 121.13668 * 0.02562 * 7 6 5 9 9 C 1.31655 * 121.90363 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99424 * 180.02562 * 2 1 3 11 11 O 1.21700 * 119.99554 * 172.96788 * 10 2 1 12 12 N 1.34773 * 120.00708 * 352.96896 * 10 2 1 13 13 C 1.46496 * 120.00560 * 180.02562 * 12 10 2 14 14 C 1.52999 * 109.47295 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.47112 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99545 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99508 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99863 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47240 * 89.99913 * 19 17 15 21 21 H 1.48505 * 109.47149 * 209.99800 * 19 17 15 22 22 H 1.48505 * 109.47476 * 329.99833 * 19 17 15 23 23 H 1.08995 * 109.47381 * 89.99623 * 1 2 3 24 24 H 1.09006 * 109.47125 * 209.99801 * 1 2 3 25 25 H 1.08998 * 109.46758 * 329.99486 * 1 2 3 26 26 H 1.07999 * 120.00102 * 348.65642 * 3 2 1 27 27 H 1.08007 * 120.86797 * 359.97438 * 5 4 3 28 28 H 1.08004 * 120.33693 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.43200 * 179.97438 * 7 6 5 30 30 H 1.08007 * 119.73313 * 180.28296 * 9 8 7 31 31 H 0.97002 * 119.99349 * 359.97438 * 12 10 2 32 32 H 1.09007 * 109.46931 * 299.99731 * 13 12 10 33 33 H 1.09003 * 109.47421 * 59.99532 * 13 12 10 34 34 H 1.08998 * 109.46819 * 299.99238 * 14 13 12 35 35 H 1.08999 * 109.47422 * 59.99948 * 14 13 12 36 36 H 0.97007 * 119.99571 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6316 1.1798 0.2509 5 6 4.4937 1.9082 -0.5818 6 6 5.8477 1.8869 -0.3018 7 6 6.3048 1.1553 0.7805 8 7 5.4713 0.4788 1.5476 9 6 4.1739 0.4665 1.3240 10 6 2.2390 -1.2682 -0.0006 11 8 3.4491 -1.2721 -0.1296 12 7 1.5728 -2.4310 0.1418 13 6 2.3052 -3.6997 0.1418 14 6 1.3204 -4.8572 0.3183 15 6 2.0740 -6.1623 0.3189 16 1 3.1479 -6.1658 0.2044 17 6 1.3923 -7.3520 0.4647 18 7 0.0846 -7.3476 0.6036 19 14 2.3263 -8.9696 0.4647 20 1 2.7218 -9.3128 1.8544 21 1 1.4576 -10.0428 -0.0821 22 1 3.5421 -8.8393 -0.3781 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6569 2.0936 -0.1840 27 1 4.1100 2.4712 -1.4199 28 1 6.5415 2.4362 -0.9209 29 1 7.3620 1.1372 1.0003 30 1 3.5230 -0.0957 1.9772 31 1 0.6083 -2.4278 0.2450 32 1 2.8345 -3.8137 -0.8043 33 1 3.0226 -3.7052 0.9624 34 1 0.7915 -4.7431 1.2646 35 1 0.6027 -4.8521 -0.5020 36 1 -0.3950 -8.1845 0.7066 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846960919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:23 Heat of formation + Delta-G solvation = -15.821088 kcal Electronic energy + Delta-G solvation = -18510.726583 eV Core-core repulsion = 15572.989948 eV Total energy + Delta-G solvation = -2937.736636 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40600 -40.29108 -36.77779 -35.86592 -34.89925 -33.31018 -32.33729 -31.16961 -27.79377 -27.02151 -24.77082 -24.18968 -23.33826 -22.44111 -20.25264 -18.54805 -18.27724 -17.53939 -17.20135 -16.77561 -16.52035 -16.36847 -15.67077 -15.09395 -14.81266 -14.67456 -14.35972 -14.15069 -13.94707 -13.79487 -13.58617 -13.34168 -13.11430 -12.95431 -12.56616 -12.41997 -12.26640 -11.69815 -11.49455 -11.13048 -10.83310 -10.63055 -10.50859 -10.21537 -9.90671 -9.19470 -8.26523 -6.37112 -0.30226 0.46871 0.77529 1.39868 1.40392 1.51873 2.25347 2.30139 2.46617 2.97475 3.08122 3.56417 3.75889 3.81978 4.04318 4.06776 4.21651 4.33001 4.44342 4.47033 4.61350 4.69150 4.80747 4.86431 4.89525 5.05556 5.16836 5.23459 5.26342 5.35755 5.46370 5.53883 5.54479 5.76030 5.87054 6.13675 6.63760 6.75468 7.12749 7.28129 7.32256 8.85360 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.004155 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.519831 B = 6738.022357 C = 7574.347491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.174 4.174 3 C -0.027 4.027 4 C -0.118 4.118 5 C -0.068 4.068 6 C -0.177 4.177 7 C 0.077 3.923 8 N -0.528 5.528 9 C 0.141 3.859 10 C 0.529 3.471 11 O -0.576 6.576 12 N -0.713 5.713 13 C 0.143 3.857 14 C 0.024 3.976 15 C -0.549 4.549 16 H 0.055 0.945 17 C 0.010 3.990 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.268 1.268 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.183 0.817 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.124 0.876 31 H 0.409 0.591 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 22.010 -2.674 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.177 4.177 3 C -0.047 4.047 4 C -0.120 4.120 5 C -0.094 4.094 6 C -0.197 4.197 7 C -0.078 4.078 8 N -0.238 5.238 9 C -0.017 4.017 10 C 0.319 3.681 11 O -0.458 6.458 12 N -0.364 5.364 13 C 0.020 3.980 14 C -0.013 4.013 15 C -0.588 4.588 16 H 0.073 0.927 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.193 1.193 23 H 0.105 0.895 24 H 0.084 0.916 25 H 0.120 0.880 26 H 0.200 0.800 27 H 0.183 0.817 28 H 0.185 0.815 29 H 0.188 0.812 30 H 0.142 0.858 31 H 0.246 0.754 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.259 21.375 -2.038 21.717 hybrid contribution -0.338 -1.059 -0.481 1.211 sum 2.920 20.316 -2.519 20.679 Atomic orbital electron populations 1.20869 0.87604 1.04448 1.03969 1.22035 0.98165 0.91028 1.06428 1.22419 0.90834 0.98413 0.93061 1.20111 0.95616 0.98961 0.97266 1.22035 0.93263 0.96097 0.97974 1.22341 0.96868 1.01469 0.98981 1.23225 1.00253 0.92583 0.91745 1.67480 1.04813 1.19760 1.31721 1.22600 0.91139 0.92606 0.95318 1.19060 0.87289 0.85429 0.76359 1.90838 1.15431 1.87927 1.51621 1.46181 1.11832 1.05919 1.72439 1.21160 0.94985 0.82530 0.99369 1.19123 0.94213 0.91731 0.96277 1.21446 0.94092 0.92276 1.50937 0.92665 1.25843 0.95806 1.02987 0.94305 1.70050 1.08057 1.28264 1.50047 0.85459 0.78532 0.78469 0.78680 1.19745 1.20215 1.19255 0.89550 0.91551 0.88047 0.79968 0.81714 0.81534 0.81198 0.85806 0.75376 0.93939 0.94052 0.97292 0.97186 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.75 71.24 0.69 -1.03 16 2 C -0.17 -4.01 5.89 -18.52 -0.11 -4.12 16 3 C -0.03 -0.54 9.43 23.84 0.22 -0.31 16 4 C -0.12 -3.01 4.36 -20.05 -0.09 -3.10 16 5 C -0.07 -1.42 9.95 22.77 0.23 -1.19 16 6 C -0.18 -3.59 10.09 22.32 0.23 -3.37 16 7 C 0.08 1.98 11.17 84.71 0.95 2.92 16 8 N -0.53 -17.65 10.34 -194.51 -2.01 -19.66 16 9 C 0.14 4.58 7.96 85.10 0.68 5.26 16 10 C 0.53 18.06 6.92 86.38 0.60 18.66 16 11 O -0.58 -23.97 12.49 -4.35 -0.05 -24.02 16 12 N -0.71 -25.55 5.51 -467.34 -2.57 -28.12 16 13 C 0.14 6.44 5.61 86.38 0.48 6.93 16 14 C 0.02 1.24 5.09 29.85 0.15 1.39 16 15 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 16 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 17 C 0.01 0.54 5.46 84.66 0.46 1.01 16 18 N -0.92 -54.56 13.29 21.45 0.28 -54.27 16 19 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.11 6.46 -2.38 -0.02 1.10 16 25 H 0.10 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 27 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 29 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.12 4.24 7.45 -2.91 -0.02 4.22 16 31 H 0.41 12.56 6.46 -92.71 -0.60 11.96 16 32 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -74.45 310.73 2.88 -71.57 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.48 Total: 16.34 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.73 Total: -8.13 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -4.30 Total: -102.06 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -74.45 2.88 -71.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846960919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.751 kcal (2) G-P(sol) polarization free energy of solvation -74.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds