Wall clock time and date at job start Mon Mar 30 2020 04:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34809 * 120.00303 * 2 1 4 4 C 1.47208 * 119.99810 * 7.60407 * 3 2 1 5 5 C 1.40268 * 120.58773 * 32.28712 * 4 3 2 6 6 C 1.38281 * 118.26559 * 179.77961 * 5 4 3 7 7 C 1.38388 * 119.33720 * 0.51953 * 6 5 4 8 8 N 1.31940 * 121.13704 * 359.72500 * 7 6 5 9 9 C 1.31661 * 121.90475 * 359.97438 * 8 7 6 10 10 C 1.46423 * 119.99700 * 179.97438 * 2 1 3 11 11 O 1.21694 * 119.99887 * 179.72805 * 10 2 1 12 12 N 1.34778 * 120.00331 * 359.97438 * 10 2 1 13 13 C 1.46494 * 120.00050 * 179.97438 * 12 10 2 14 14 C 1.53008 * 109.46878 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46788 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99552 * 180.02562 * 15 14 13 18 18 N 1.31524 * 119.99781 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00138 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46799 * 90.00482 * 19 17 15 21 21 H 1.48501 * 109.47224 * 209.99971 * 19 17 15 22 22 H 1.48497 * 109.47224 * 330.00338 * 19 17 15 23 23 H 1.08999 * 109.47488 * 266.21161 * 1 2 3 24 24 H 1.09004 * 109.46944 * 26.21266 * 1 2 3 25 25 H 1.08999 * 109.46973 * 146.20645 * 1 2 3 26 26 H 1.07991 * 120.00088 * 187.60523 * 3 2 1 27 27 H 1.08004 * 120.86384 * 0.02602 * 5 4 3 28 28 H 1.08006 * 120.33000 * 180.24086 * 6 5 4 29 29 H 1.07997 * 119.43309 * 179.73964 * 7 6 5 30 30 H 1.07995 * 119.73465 * 180.02562 * 9 8 7 31 31 H 0.97002 * 119.99705 * 0.02562 * 12 10 2 32 32 H 1.09002 * 109.47589 * 299.99895 * 13 12 10 33 33 H 1.08995 * 109.47244 * 60.00371 * 13 12 10 34 34 H 1.08999 * 109.46854 * 299.99654 * 14 13 12 35 35 H 1.08995 * 109.47222 * 59.99940 * 14 13 12 36 36 H 0.96994 * 119.99925 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1674 0.0000 4 6 1.4548 2.4367 0.1687 5 6 0.2964 2.4968 0.9574 6 6 -0.3453 3.7149 1.0867 7 6 0.1641 4.8225 0.4318 8 7 1.2531 4.7366 -0.3081 9 6 1.9043 3.6023 -0.4588 10 6 2.2391 -1.2681 0.0006 11 8 3.4560 -1.2681 -0.0044 12 7 1.5652 -2.4353 0.0016 13 6 2.2976 -3.7040 0.0016 14 6 1.3033 -4.8669 0.0023 15 6 2.0568 -6.1720 0.0029 16 1 3.1368 -6.1721 0.0024 17 6 1.3673 -7.3661 0.0030 18 7 2.0249 -8.5051 0.0041 19 14 -0.5006 -7.3660 0.0031 20 1 -0.9956 -7.3662 -1.3970 21 1 -0.9957 -8.5784 0.7032 22 1 -0.9956 -6.1534 0.7030 23 1 -0.3634 -0.0679 1.0254 24 1 -0.3633 0.9220 -0.4539 25 1 -0.3633 -0.8540 -0.5716 26 1 3.2539 1.1715 -0.1238 27 1 -0.0822 1.6156 1.4539 28 1 -1.2377 3.8000 1.6891 29 1 -0.3382 5.7737 0.5283 30 1 2.7925 3.5719 -1.0725 31 1 0.5952 -2.4353 0.0016 32 1 2.9236 -3.7622 -0.8888 33 1 2.9249 -3.7614 0.8911 34 1 0.6771 -4.8090 0.8925 35 1 0.6763 -4.8094 -0.8874 36 1 1.5399 -9.3451 0.0045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846960921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:25 Heat of formation + Delta-G solvation = 6.346100 kcal Electronic energy + Delta-G solvation = -17996.062740 eV Core-core repulsion = 15059.287345 eV Total energy + Delta-G solvation = -2936.775394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57037 -39.45136 -35.79414 -35.04196 -32.88788 -32.36942 -31.41426 -29.92752 -27.67028 -25.46150 -23.84931 -23.68715 -21.59102 -20.81639 -18.92204 -17.31718 -17.21117 -16.94789 -16.13973 -15.69324 -15.23051 -15.12733 -14.33564 -14.21896 -14.03202 -13.91952 -13.51730 -13.31619 -12.90310 -12.65919 -12.62806 -12.12713 -11.76438 -11.50582 -11.25202 -10.52372 -10.42596 -10.32738 -10.00862 -9.98653 -9.83855 -9.54692 -9.34019 -8.75835 -8.64626 -8.48730 -6.13670 -4.14012 0.25270 0.91098 1.62676 3.22679 3.30111 3.31350 3.34820 3.50877 3.55810 4.10349 4.34952 4.46363 4.47879 4.53069 4.68488 4.73494 4.87504 5.10965 5.19054 5.28304 5.35747 5.45901 5.62005 5.67879 5.75902 6.01925 6.16431 6.20924 6.24221 6.32459 6.51776 6.68407 7.09291 7.18990 7.60908 7.63305 7.83602 8.39970 8.48770 8.90704 9.46203 10.99385 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043371 B = 0.003303 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.440219 B = 8474.809776 C = 9009.020644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C -0.048 4.048 4 C -0.112 4.112 5 C -0.067 4.067 6 C -0.175 4.175 7 C 0.098 3.902 8 N -0.487 5.487 9 C 0.118 3.882 10 C 0.543 3.457 11 O -0.546 6.546 12 N -0.719 5.719 13 C 0.129 3.871 14 C -0.022 4.022 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.266 1.266 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.396 0.604 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.017 0.983 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 24.197 1.451 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.068 4.068 4 C -0.114 4.114 5 C -0.092 4.092 6 C -0.195 4.195 7 C -0.058 4.058 8 N -0.195 5.195 9 C -0.040 4.040 10 C 0.330 3.670 11 O -0.426 6.426 12 N -0.368 5.368 13 C 0.006 3.994 14 C -0.060 4.060 15 C -0.562 4.562 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.191 1.191 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.155 0.845 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.231 0.769 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.868 24.699 1.033 25.657 hybrid contribution -1.778 -1.026 0.432 2.098 sum -8.645 23.673 1.465 25.244 Atomic orbital electron populations 1.21187 0.91287 1.03536 1.02446 1.21922 0.96277 0.93372 1.04178 1.22032 1.00177 0.89299 0.95301 1.20051 0.96479 0.95028 0.99813 1.22205 0.93083 0.98588 0.95329 1.22119 1.01937 0.93604 1.01802 1.22878 0.92061 0.98708 0.92188 1.67656 1.07824 1.27571 1.16404 1.23101 0.98348 0.86845 0.95725 1.18069 0.87383 0.84070 0.77439 1.90807 1.13428 1.87815 1.50538 1.46284 1.10498 1.06633 1.73434 1.21552 0.95521 0.80493 1.01793 1.19798 0.95428 0.93930 0.96825 1.20914 0.95279 0.88255 1.51736 0.90584 1.25009 0.98510 0.95422 0.94359 1.69905 1.35891 0.97483 1.50333 0.86747 0.86031 0.77756 0.78512 1.20206 1.21243 1.19103 0.90489 0.90579 0.90986 0.84020 0.83699 0.84499 0.82746 0.82222 0.76905 0.91768 0.91764 0.96000 0.96429 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 7.65 36.01 0.28 -0.84 16 2 C -0.15 -1.84 5.94 -102.54 -0.61 -2.45 16 3 C -0.05 -0.53 9.38 -37.16 -0.35 -0.87 16 4 C -0.11 -1.06 5.27 -104.91 -0.55 -1.61 16 5 C -0.07 -0.54 7.71 -38.80 -0.30 -0.84 16 6 C -0.17 -1.21 10.09 -39.51 -0.40 -1.61 16 7 C 0.10 0.77 11.17 -17.45 -0.19 0.57 16 8 N -0.49 -4.91 10.34 -12.84 -0.13 -5.04 16 9 C 0.12 1.12 10.96 -17.04 -0.19 0.93 16 10 C 0.54 8.82 7.73 -12.97 -0.10 8.72 16 11 O -0.55 -10.94 16.25 5.19 0.08 -10.85 16 12 N -0.72 -11.68 5.50 -61.70 -0.34 -12.02 16 13 C 0.13 2.60 5.61 -4.04 -0.02 2.57 16 14 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 15 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 16 H 0.08 2.29 7.99 -52.49 -0.42 1.88 16 17 C 0.07 1.96 5.47 -17.81 -0.10 1.86 16 18 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 19 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 23 H 0.08 0.55 6.92 -51.93 -0.36 0.19 16 24 H 0.08 0.60 5.96 -51.93 -0.31 0.29 16 25 H 0.07 0.61 6.89 -51.93 -0.36 0.25 16 26 H 0.14 1.64 7.54 -52.49 -0.40 1.24 16 27 H 0.15 0.98 5.34 -52.48 -0.28 0.70 16 28 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 29 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.40 5.33 6.64 -40.82 -0.27 5.06 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -33.33 305.90 -7.10 -40.43 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.44 Total: 2.21 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.98 Total: -9.05 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.30 Total: -43.47 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.33 -7.10 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846960921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.778 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds