Wall clock time and date at job start Mon Mar 30 2020 04:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34803 * 120.00034 * 2 1 4 4 C 1.47209 * 120.00175 * 353.27054 * 3 2 1 5 5 C 1.40267 * 120.58491 * 328.23157 * 4 3 2 6 6 C 1.38281 * 118.27022 * 179.73218 * 5 4 3 7 7 C 1.38396 * 119.33321 * 0.54153 * 6 5 4 8 8 N 1.31948 * 121.13632 * 359.71662 * 7 6 5 9 9 C 1.31657 * 121.90270 * 0.02562 * 8 7 6 10 10 C 1.46427 * 119.99762 * 180.02562 * 2 1 3 11 11 O 1.21699 * 119.99853 * 280.49072 * 10 2 1 12 12 N 1.34776 * 119.99951 * 100.22279 * 10 2 1 13 13 C 1.46504 * 119.99921 * 5.38254 * 12 10 2 14 14 C 1.46501 * 119.99786 * 185.37746 * 12 10 2 15 15 C 1.50700 * 109.46490 * 90.00470 * 14 12 10 16 16 H 1.07997 * 120.00881 * 359.97438 * 15 14 12 17 17 C 1.37884 * 119.99726 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99925 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99876 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47401 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47478 * 120.00302 * 19 17 15 22 22 H 1.48506 * 109.47183 * 239.99519 * 19 17 15 23 23 H 1.09000 * 109.47426 * 211.78401 * 1 2 3 24 24 H 1.09007 * 109.47150 * 331.78013 * 1 2 3 25 25 H 1.09005 * 109.47452 * 91.77951 * 1 2 3 26 26 H 1.08000 * 120.00501 * 173.26394 * 3 2 1 27 27 H 1.08001 * 120.86447 * 359.97438 * 5 4 3 28 28 H 1.08003 * 120.33808 * 180.23823 * 6 5 4 29 29 H 1.07997 * 119.43730 * 179.74286 * 7 6 5 30 30 H 1.07997 * 119.73457 * 179.97438 * 9 8 7 31 31 H 1.08996 * 109.46904 * 91.50528 * 13 12 10 32 32 H 1.08998 * 109.46689 * 211.50357 * 13 12 10 33 33 H 1.09001 * 109.47115 * 331.50203 * 13 12 10 34 34 H 1.08997 * 109.46755 * 209.99851 * 14 12 10 35 35 H 1.08996 * 109.47553 * 330.00084 * 14 12 10 36 36 H 0.97001 * 120.00223 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 1.4526 2.4379 -0.1494 5 6 0.2780 2.5016 -0.9133 6 6 -0.3708 3.7184 -1.0169 7 6 0.1601 4.8262 -0.3795 8 7 1.2700 4.7392 0.3286 9 6 1.9227 3.6036 0.4626 10 6 2.2391 -1.2681 -0.0006 11 8 2.3771 -1.8915 1.0355 12 7 2.7554 -1.7476 -1.1494 13 6 2.6876 -0.9460 -2.3738 14 6 3.3845 -3.0705 -1.1738 15 6 2.3471 -4.1140 -1.4992 16 1 1.3217 -3.8213 -1.6702 17 6 2.7070 -5.4427 -1.5785 18 7 3.9558 -5.7991 -1.3707 19 14 1.4210 -6.7362 -1.9810 20 1 0.1016 -6.0811 -2.1683 21 1 1.8044 -7.4440 -3.2290 22 1 1.3346 -7.7124 -0.8652 23 1 -0.3634 -0.8735 0.5413 24 1 -0.3634 0.9056 0.4860 25 1 -0.3634 -0.0319 -1.0272 26 1 3.2554 1.1707 0.1097 27 1 -0.1118 1.6223 -1.4046 28 1 -1.2799 3.8045 -1.5935 29 1 -0.3429 5.7782 -0.4628 30 1 2.8283 3.5724 1.0502 31 1 3.5894 -0.3402 -2.4618 32 1 2.6081 -1.6070 -3.2369 33 1 1.8147 -0.2944 -2.3336 34 1 4.1667 -3.0868 -1.9328 35 1 3.8206 -3.2835 -0.1979 36 1 4.2090 -6.7339 -1.4262 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847383289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:29 Heat of formation + Delta-G solvation = -1.938916 kcal Electronic energy + Delta-G solvation = -18744.127798 eV Core-core repulsion = 15806.993138 eV Total energy + Delta-G solvation = -2937.134660 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28511 -40.58090 -36.67950 -36.62601 -34.67981 -32.93887 -31.94393 -29.85462 -28.48914 -27.44634 -25.79236 -24.26342 -24.00112 -21.86914 -19.38354 -18.71414 -17.87304 -17.86278 -17.34746 -16.69398 -16.66251 -16.21364 -15.81359 -15.03239 -14.71953 -14.68819 -14.47184 -14.03728 -13.90809 -13.69677 -13.49275 -13.28813 -13.09078 -12.82390 -12.76230 -12.57554 -12.53405 -12.23255 -11.70799 -11.20509 -10.87232 -10.66959 -10.55491 -10.25929 -9.50779 -9.29124 -8.24662 -6.40001 -0.30508 0.36811 1.09608 1.36527 1.39047 1.50632 1.64870 2.31293 2.44215 2.93159 3.05387 3.44336 3.66328 3.88454 3.96088 4.01076 4.08281 4.22774 4.36587 4.52953 4.62962 4.66189 4.75801 4.84057 4.89110 4.93268 4.96009 5.08200 5.17026 5.20488 5.41950 5.48799 5.53763 5.78470 5.79610 6.02106 6.62784 6.70645 7.04338 7.21472 7.36587 8.83147 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.040458 B = 0.004170 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.903020 B = 6713.383407 C = 6919.726392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.138 4.138 3 C -0.070 4.070 4 C -0.113 4.113 5 C -0.072 4.072 6 C -0.166 4.166 7 C 0.089 3.911 8 N -0.513 5.513 9 C 0.103 3.897 10 C 0.537 3.463 11 O -0.600 6.600 12 N -0.599 5.599 13 C 0.081 3.919 14 C 0.256 3.744 15 C -0.545 4.545 16 H 0.057 0.943 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.282 1.282 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.159 0.841 28 H 0.169 0.831 29 H 0.180 0.820 30 H 0.164 0.836 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.027 0.973 35 H -0.001 1.001 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 20.245 -3.810 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.141 4.141 3 C -0.090 4.090 4 C -0.115 4.115 5 C -0.097 4.097 6 C -0.185 4.185 7 C -0.067 4.067 8 N -0.221 5.221 9 C -0.054 4.054 10 C 0.326 3.674 11 O -0.483 6.483 12 N -0.328 5.328 13 C -0.061 4.061 14 C 0.135 3.865 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.208 1.208 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.145 0.855 27 H 0.176 0.824 28 H 0.187 0.813 29 H 0.197 0.803 30 H 0.181 0.819 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.017 0.983 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.991 20.529 -2.916 22.601 hybrid contribution -0.167 -2.003 -0.239 2.024 sum -9.158 18.527 -3.155 20.906 Atomic orbital electron populations 1.21088 0.88286 1.03305 1.03618 1.21691 0.97893 0.91151 1.03399 1.21754 0.99284 0.89522 0.98439 1.19863 0.97131 0.93718 1.00766 1.22460 0.92597 0.99722 0.94927 1.22441 1.02384 0.92539 1.01138 1.23394 0.91300 1.00240 0.91723 1.67668 1.09205 1.27825 1.17434 1.23198 0.99100 0.87055 0.96088 1.18971 0.78951 0.86245 0.83199 1.90773 1.61493 1.62205 1.33784 1.48165 1.56410 1.18586 1.09676 1.21907 1.02881 0.95354 0.85930 1.18837 0.92949 0.78928 0.95821 1.21727 0.95581 0.92619 1.48409 0.92502 1.25902 0.97753 1.00805 0.94771 1.70063 1.18538 1.18177 1.50043 0.85319 0.78919 0.78257 0.78024 1.18815 1.19355 1.20822 0.93117 0.88786 0.88095 0.85468 0.82360 0.81342 0.80283 0.81890 0.91438 0.91094 0.89117 0.95533 0.98333 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 8.15 71.24 0.58 -1.96 16 2 C -0.14 -4.16 3.89 -18.52 -0.07 -4.23 16 3 C -0.07 -1.73 9.18 23.84 0.22 -1.51 16 4 C -0.11 -2.26 5.30 -20.05 -0.11 -2.36 16 5 C -0.07 -1.13 7.72 22.77 0.18 -0.95 16 6 C -0.17 -2.04 10.09 22.32 0.23 -1.82 16 7 C 0.09 1.33 11.17 84.71 0.95 2.28 16 8 N -0.51 -10.58 10.34 -194.51 -2.01 -12.59 16 9 C 0.10 2.10 10.96 85.10 0.93 3.03 16 10 C 0.54 23.26 7.03 86.38 0.61 23.87 16 11 O -0.60 -32.82 16.66 -4.35 -0.07 -32.89 16 12 N -0.60 -25.87 2.86 -856.20 -2.45 -28.32 16 13 C 0.08 2.47 10.12 127.77 1.29 3.76 16 14 C 0.26 13.99 5.21 85.63 0.45 14.44 16 15 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 16 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 17 C 0.01 0.39 5.46 84.66 0.46 0.85 16 18 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 19 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 24 H 0.09 1.84 6.02 -2.38 -0.01 1.83 16 25 H 0.10 1.83 6.81 -2.38 -0.02 1.81 16 26 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.16 2.04 5.20 -2.91 -0.02 2.02 16 28 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 29 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 33 H 0.09 2.15 6.68 -2.39 -0.02 2.14 16 34 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 35 H 0.00 -0.09 7.36 -2.39 -0.02 -0.11 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -77.38 310.52 4.81 -72.57 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.08 Total: 6.45 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.95 Total: 4.21 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.17 Total: -96.92 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.07 Total: -32.89 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -77.38 4.81 -72.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847383289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.634 kcal (2) G-P(sol) polarization free energy of solvation -77.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds