Wall clock time and date at job start Mon Mar 30 2020 04:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34635 * 120.00045 * 2 1 4 4 C 1.47398 * 120.00221 * 169.11192 * 3 2 1 5 5 C 1.40139 * 120.94581 * 315.82417 * 4 3 2 6 6 C 1.38002 * 118.96499 * 179.75279 * 5 4 3 7 7 N 1.31888 * 120.92431 * 0.53746 * 6 5 4 8 8 C 1.31883 * 122.11423 * 359.73087 * 7 6 5 9 9 C 1.38003 * 120.92489 * 359.97438 * 8 7 6 10 10 C 1.46650 * 119.99917 * 180.02562 * 2 1 3 11 11 O 1.21666 * 119.99876 * 172.87230 * 10 2 1 12 12 N 1.34773 * 120.00273 * 352.86335 * 10 2 1 13 13 C 1.46502 * 120.00568 * 180.02562 * 12 10 2 14 14 H 1.09004 * 109.46936 * 34.99693 * 13 12 10 15 15 C 1.52998 * 109.46945 * 275.00468 * 13 12 10 16 16 C 1.50698 * 109.47372 * 154.99781 * 13 12 10 17 17 H 1.07997 * 120.00066 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99541 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00364 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99643 * 180.02562 * 18 16 13 21 21 H 1.48492 * 109.47227 * 270.00251 * 20 18 16 22 22 H 1.48504 * 109.47070 * 30.00663 * 20 18 16 23 23 H 1.48498 * 109.46596 * 150.00259 * 20 18 16 24 24 H 1.08995 * 109.47219 * 269.99500 * 1 2 3 25 25 H 1.09004 * 109.47384 * 30.00063 * 1 2 3 26 26 H 1.09005 * 109.47094 * 149.99448 * 1 2 3 27 27 H 1.08004 * 119.99875 * 349.10986 * 3 2 1 28 28 H 1.08000 * 120.51989 * 359.97438 * 5 4 3 29 29 H 1.07992 * 119.53882 * 180.26734 * 6 5 4 30 30 H 1.08002 * 119.53859 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.51927 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.99715 * 0.02562 * 12 10 2 33 33 H 1.09001 * 109.47553 * 59.99582 * 15 13 12 34 34 H 1.09000 * 109.47132 * 179.97438 * 15 13 12 35 35 H 1.09004 * 109.46670 * 299.99387 * 15 13 12 36 36 H 0.97000 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1802 1.1660 0.0000 4 6 3.6343 1.1775 0.2411 5 6 4.2015 0.4041 1.2629 6 6 5.5683 0.4419 1.4493 7 7 6.3353 1.1992 0.6894 8 6 5.8431 1.9466 -0.2794 9 6 4.4883 1.9664 -0.5412 10 6 2.2402 -1.2700 -0.0006 11 8 3.4498 -1.2740 -0.1313 12 7 1.5742 -2.4328 0.1439 13 6 2.3067 -3.7015 0.1439 14 1 3.2750 -3.5620 0.6246 15 6 2.5158 -4.1697 -1.2976 16 6 1.5157 -4.7383 0.8992 17 1 0.5625 -4.4783 1.3352 18 6 2.0086 -6.0190 1.0326 19 7 3.1691 -6.3358 0.5012 20 14 1.0277 -7.3044 1.9682 21 1 1.4123 -7.2735 3.4022 22 1 -0.4224 -7.0120 1.8381 23 1 1.3137 -8.6496 1.4079 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6547 2.0929 -0.1767 28 1 3.5790 -0.2146 1.8923 29 1 6.0157 -0.1538 2.2312 30 1 6.5098 2.5508 -0.8768 31 1 4.0923 2.5811 -1.3359 32 1 0.6098 -2.4296 0.2479 33 1 3.0879 -3.4198 -1.8439 34 1 3.0611 -5.1134 -1.2976 35 1 1.5474 -4.3092 -1.7783 36 1 3.5160 -7.2367 0.5954 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847405401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:04 Heat of formation + Delta-G solvation = 14.944711 kcal Electronic energy + Delta-G solvation = -19128.498688 eV Core-core repulsion = 16192.096157 eV Total energy + Delta-G solvation = -2936.402531 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04604 -38.82305 -35.31291 -34.44949 -32.73121 -31.63608 -30.84098 -28.83309 -27.04865 -25.29797 -23.74797 -22.96972 -22.09095 -20.14646 -18.89554 -17.34307 -16.26155 -15.81183 -15.61207 -15.37417 -14.93695 -14.25763 -14.23026 -13.78365 -13.30989 -13.28788 -13.11155 -12.83775 -12.44043 -12.34229 -11.81146 -11.69357 -11.41533 -11.10951 -11.01022 -10.79827 -10.37679 -10.27145 -10.05664 -9.22608 -9.11863 -9.08693 -8.79036 -8.57572 -8.16662 -7.87322 -6.15502 -4.25381 0.89456 1.54447 2.13216 3.22137 3.28949 3.30488 3.84222 4.05566 4.20250 4.35627 4.67539 4.78345 5.04969 5.15549 5.17220 5.26754 5.35856 5.50955 5.53772 5.59275 5.83373 5.93524 6.07750 6.14559 6.33695 6.43961 6.68199 6.79993 6.93192 7.03370 7.11440 7.40563 7.52317 7.65831 7.87422 8.11214 8.32375 8.61032 8.73897 9.06355 9.42411 10.90361 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.005334 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.471342 B = 5248.101900 C = 5847.858272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.148 4.148 3 C -0.069 4.069 4 C -0.009 4.009 5 C -0.086 4.086 6 C 0.085 3.915 7 N -0.487 5.487 8 C 0.081 3.919 9 C -0.164 4.164 10 C 0.527 3.473 11 O -0.540 6.540 12 N -0.699 5.699 13 C 0.264 3.736 14 H 0.049 0.951 15 C -0.146 4.146 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.285 1.285 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.128 0.872 32 H 0.389 0.611 33 H 0.014 0.986 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 14.567 -0.600 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.151 4.151 3 C -0.089 4.089 4 C -0.017 4.017 5 C -0.106 4.106 6 C -0.070 4.070 7 N -0.197 5.197 8 C -0.076 4.076 9 C -0.184 4.184 10 C 0.313 3.687 11 O -0.420 6.420 12 N -0.346 5.346 13 C 0.163 3.837 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.210 1.210 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.222 0.778 33 H 0.033 0.967 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.214 14.321 -0.556 14.502 hybrid contribution -1.989 -0.925 0.190 2.201 sum -4.203 13.396 -0.366 14.045 Atomic orbital electron populations 1.20837 0.90639 1.03191 1.02804 1.22259 0.96477 0.93941 1.02458 1.22004 0.92063 0.97144 0.97651 1.19130 0.93128 0.94816 0.94676 1.22093 0.96459 0.95008 0.97079 1.22473 0.90405 0.96183 0.97923 1.67470 1.40594 1.06285 1.05313 1.22434 0.93009 0.97051 0.95137 1.22100 0.94833 1.00862 1.00567 1.18255 0.87601 0.84303 0.78590 1.90836 1.13532 1.87063 1.50606 1.46595 1.10845 1.07307 1.69829 1.18762 0.93188 0.78038 0.93757 0.93272 1.22070 0.99178 1.02123 0.97122 1.21196 1.05924 0.95114 1.35121 0.92118 1.24889 0.95043 0.98297 0.95422 1.69903 1.18047 1.20309 1.43718 0.86448 0.80125 0.80613 0.79912 1.20525 1.19843 1.21048 0.90375 0.91220 0.91110 0.84828 0.85653 0.83254 0.83471 0.85438 0.77811 0.96688 0.89123 0.95527 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.47 36.01 0.34 -0.90 16 2 C -0.15 -2.13 5.91 -102.50 -0.61 -2.74 16 3 C -0.07 -0.91 9.48 -37.13 -0.35 -1.26 16 4 C -0.01 -0.14 4.53 -104.74 -0.47 -0.62 16 5 C -0.09 -1.46 6.73 -38.96 -0.26 -1.73 16 6 C 0.09 1.44 11.17 -17.61 -0.20 1.25 16 7 N -0.49 -8.24 10.34 -13.35 -0.14 -8.38 16 8 C 0.08 1.18 11.17 -17.62 -0.20 0.99 16 9 C -0.16 -2.28 9.90 -38.96 -0.39 -2.66 16 10 C 0.53 10.22 6.79 -12.87 -0.09 10.14 16 11 O -0.54 -12.31 11.86 5.22 0.06 -12.25 16 12 N -0.70 -14.22 4.99 -56.26 -0.28 -14.50 16 13 C 0.26 6.63 2.56 -69.08 -0.18 6.45 16 14 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 15 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 16 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.75 11.32 55.43 0.63 -24.12 16 20 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 26 H 0.07 0.76 7.00 -51.93 -0.36 0.40 16 27 H 0.13 1.26 8.05 -52.48 -0.42 0.84 16 28 H 0.13 2.17 7.16 -52.49 -0.38 1.80 16 29 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.39 6.85 6.82 -40.82 -0.28 6.58 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -31.37 305.75 -7.24 -38.61 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.64 Total: 7.61 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.45 Total: -6.97 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.21 Total: -47.00 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.06 Total: -12.25 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.37 -7.24 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847405401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.555 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds