Wall clock time and date at job start Mon Mar 30 2020 04:48:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.34635 * 120.00045 * 2 1
4 4 C 1.47398 * 120.00221 * 169.11192 * 3 2 1
5 5 C 1.40139 * 120.94581 * 315.82417 * 4 3 2
6 6 C 1.38002 * 118.96499 * 179.75279 * 5 4 3
7 7 N 1.31888 * 120.92431 * 0.53746 * 6 5 4
8 8 C 1.31883 * 122.11423 * 359.73087 * 7 6 5
9 9 C 1.38003 * 120.92489 * 359.97438 * 8 7 6
10 10 C 1.46650 * 119.99917 * 180.02562 * 2 1 3
11 11 O 1.21666 * 119.99876 * 172.87230 * 10 2 1
12 12 N 1.34773 * 120.00273 * 352.86335 * 10 2 1
13 13 C 1.46502 * 120.00568 * 180.02562 * 12 10 2
14 14 H 1.09004 * 109.46936 * 34.99693 * 13 12 10
15 15 C 1.52998 * 109.46945 * 275.00468 * 13 12 10
16 16 C 1.50698 * 109.47372 * 154.99781 * 13 12 10
17 17 H 1.07997 * 120.00066 * 0.02562 * 16 13 12
18 18 C 1.37878 * 119.99541 * 179.97438 * 16 13 12
19 19 N 1.31517 * 120.00364 * 0.02562 * 18 16 13
20 20 Si 1.86806 * 119.99643 * 180.02562 * 18 16 13
21 21 H 1.48492 * 109.47227 * 270.00251 * 20 18 16
22 22 H 1.48504 * 109.47070 * 30.00663 * 20 18 16
23 23 H 1.48498 * 109.46596 * 150.00259 * 20 18 16
24 24 H 1.08995 * 109.47219 * 269.99500 * 1 2 3
25 25 H 1.09004 * 109.47384 * 30.00063 * 1 2 3
26 26 H 1.09005 * 109.47094 * 149.99448 * 1 2 3
27 27 H 1.08004 * 119.99875 * 349.10986 * 3 2 1
28 28 H 1.08000 * 120.51989 * 359.97438 * 5 4 3
29 29 H 1.07992 * 119.53882 * 180.26734 * 6 5 4
30 30 H 1.08002 * 119.53859 * 180.02562 * 8 7 6
31 31 H 1.07997 * 120.51927 * 179.97438 * 9 8 7
32 32 H 0.97004 * 119.99715 * 0.02562 * 12 10 2
33 33 H 1.09001 * 109.47553 * 59.99582 * 15 13 12
34 34 H 1.09000 * 109.47132 * 179.97438 * 15 13 12
35 35 H 1.09004 * 109.46670 * 299.99387 * 15 13 12
36 36 H 0.97000 * 119.99944 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1802 1.1660 0.0000
4 6 3.6343 1.1775 0.2411
5 6 4.2015 0.4041 1.2629
6 6 5.5683 0.4419 1.4493
7 7 6.3353 1.1992 0.6894
8 6 5.8431 1.9466 -0.2794
9 6 4.4883 1.9664 -0.5412
10 6 2.2402 -1.2700 -0.0006
11 8 3.4498 -1.2740 -0.1313
12 7 1.5742 -2.4328 0.1439
13 6 2.3067 -3.7015 0.1439
14 1 3.2750 -3.5620 0.6246
15 6 2.5158 -4.1697 -1.2976
16 6 1.5157 -4.7383 0.8992
17 1 0.5625 -4.4783 1.3352
18 6 2.0086 -6.0190 1.0326
19 7 3.1691 -6.3358 0.5012
20 14 1.0277 -7.3044 1.9682
21 1 1.4123 -7.2735 3.4022
22 1 -0.4224 -7.0120 1.8381
23 1 1.3137 -8.6496 1.4079
24 1 -0.3633 -0.0001 1.0276
25 1 -0.3634 0.8900 -0.5138
26 1 -0.3633 -0.8900 -0.5139
27 1 1.6547 2.0929 -0.1767
28 1 3.5790 -0.2146 1.8923
29 1 6.0157 -0.1538 2.2312
30 1 6.5098 2.5508 -0.8768
31 1 4.0923 2.5811 -1.3359
32 1 0.6098 -2.4296 0.2479
33 1 3.0879 -3.4198 -1.8439
34 1 3.0611 -5.1134 -1.2976
35 1 1.5474 -4.3092 -1.7783
36 1 3.5160 -7.2367 0.5954
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000847405401.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:48:04
Heat of formation + Delta-G solvation = 14.944711 kcal
Electronic energy + Delta-G solvation = -19128.498688 eV
Core-core repulsion = 16192.096157 eV
Total energy + Delta-G solvation = -2936.402531 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.04604 -38.82305 -35.31291 -34.44949 -32.73121 -31.63608 -30.84098 -28.83309
-27.04865 -25.29797 -23.74797 -22.96972 -22.09095 -20.14646 -18.89554 -17.34307
-16.26155 -15.81183 -15.61207 -15.37417 -14.93695 -14.25763 -14.23026 -13.78365
-13.30989 -13.28788 -13.11155 -12.83775 -12.44043 -12.34229 -11.81146 -11.69357
-11.41533 -11.10951 -11.01022 -10.79827 -10.37679 -10.27145 -10.05664 -9.22608
-9.11863 -9.08693 -8.79036 -8.57572 -8.16662 -7.87322 -6.15502 -4.25381
0.89456 1.54447 2.13216 3.22137 3.28949 3.30488 3.84222 4.05566
4.20250 4.35627 4.67539 4.78345 5.04969 5.15549 5.17220 5.26754
5.35856 5.50955 5.53772 5.59275 5.83373 5.93524 6.07750 6.14559
6.33695 6.43961 6.68199 6.79993 6.93192 7.03370 7.11440 7.40563
7.52317 7.65831 7.87422 8.11214 8.32375 8.61032 8.73897 9.06355
9.42411 10.90361
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.025277 B = 0.005334 C = 0.004787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1107.471342 B = 5248.101900 C = 5847.858272
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.148 4.148
3 C -0.069 4.069
4 C -0.009 4.009
5 C -0.086 4.086
6 C 0.085 3.915
7 N -0.487 5.487
8 C 0.081 3.919
9 C -0.164 4.164
10 C 0.527 3.473
11 O -0.540 6.540
12 N -0.699 5.699
13 C 0.264 3.736
14 H 0.049 0.951
15 C -0.146 4.146
16 C -0.535 4.535
17 H 0.061 0.939
18 C 0.067 3.933
19 N -0.882 5.882
20 Si 0.902 3.098
21 H -0.279 1.279
22 H -0.274 1.274
23 H -0.285 1.285
24 H 0.078 0.922
25 H 0.069 0.931
26 H 0.070 0.930
27 H 0.134 0.866
28 H 0.126 0.874
29 H 0.150 0.850
30 H 0.148 0.852
31 H 0.128 0.872
32 H 0.389 0.611
33 H 0.014 0.986
34 H 0.090 0.910
35 H 0.026 0.974
36 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.102 14.567 -0.600 15.146
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.151 4.151
3 C -0.089 4.089
4 C -0.017 4.017
5 C -0.106 4.106
6 C -0.070 4.070
7 N -0.197 5.197
8 C -0.076 4.076
9 C -0.184 4.184
10 C 0.313 3.687
11 O -0.420 6.420
12 N -0.346 5.346
13 C 0.163 3.837
14 H 0.067 0.933
15 C -0.205 4.205
16 C -0.574 4.574
17 H 0.079 0.921
18 C -0.137 4.137
19 N -0.520 5.520
20 Si 0.729 3.271
21 H -0.205 1.205
22 H -0.198 1.198
23 H -0.210 1.210
24 H 0.096 0.904
25 H 0.088 0.912
26 H 0.089 0.911
27 H 0.152 0.848
28 H 0.143 0.857
29 H 0.167 0.833
30 H 0.165 0.835
31 H 0.146 0.854
32 H 0.222 0.778
33 H 0.033 0.967
34 H 0.109 0.891
35 H 0.045 0.955
36 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -2.214 14.321 -0.556 14.502
hybrid contribution -1.989 -0.925 0.190 2.201
sum -4.203 13.396 -0.366 14.045
Atomic orbital electron populations
1.20837 0.90639 1.03191 1.02804 1.22259 0.96477 0.93941 1.02458
1.22004 0.92063 0.97144 0.97651 1.19130 0.93128 0.94816 0.94676
1.22093 0.96459 0.95008 0.97079 1.22473 0.90405 0.96183 0.97923
1.67470 1.40594 1.06285 1.05313 1.22434 0.93009 0.97051 0.95137
1.22100 0.94833 1.00862 1.00567 1.18255 0.87601 0.84303 0.78590
1.90836 1.13532 1.87063 1.50606 1.46595 1.10845 1.07307 1.69829
1.18762 0.93188 0.78038 0.93757 0.93272 1.22070 0.99178 1.02123
0.97122 1.21196 1.05924 0.95114 1.35121 0.92118 1.24889 0.95043
0.98297 0.95422 1.69903 1.18047 1.20309 1.43718 0.86448 0.80125
0.80613 0.79912 1.20525 1.19843 1.21048 0.90375 0.91220 0.91110
0.84828 0.85653 0.83254 0.83471 0.85438 0.77811 0.96688 0.89123
0.95527 0.92525
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.24 9.47 36.01 0.34 -0.90 16
2 C -0.15 -2.13 5.91 -102.50 -0.61 -2.74 16
3 C -0.07 -0.91 9.48 -37.13 -0.35 -1.26 16
4 C -0.01 -0.14 4.53 -104.74 -0.47 -0.62 16
5 C -0.09 -1.46 6.73 -38.96 -0.26 -1.73 16
6 C 0.09 1.44 11.17 -17.61 -0.20 1.25 16
7 N -0.49 -8.24 10.34 -13.35 -0.14 -8.38 16
8 C 0.08 1.18 11.17 -17.62 -0.20 0.99 16
9 C -0.16 -2.28 9.90 -38.96 -0.39 -2.66 16
10 C 0.53 10.22 6.79 -12.87 -0.09 10.14 16
11 O -0.54 -12.31 11.86 5.22 0.06 -12.25 16
12 N -0.70 -14.22 4.99 -56.26 -0.28 -14.50 16
13 C 0.26 6.63 2.56 -69.08 -0.18 6.45 16
14 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16
15 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16
16 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16
17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16
18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16
19 N -0.88 -24.75 11.32 55.43 0.63 -24.12 16
20 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16
21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
25 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16
26 H 0.07 0.76 7.00 -51.93 -0.36 0.40 16
27 H 0.13 1.26 8.05 -52.48 -0.42 0.84 16
28 H 0.13 2.17 7.16 -52.49 -0.38 1.80 16
29 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16
30 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16
31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16
32 H 0.39 6.85 6.82 -40.82 -0.28 6.58 16
33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16
35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
LS Contribution 305.75 15.07 4.61 4.61
Total: -1.00 -31.37 305.75 -7.24 -38.61
By element:
Atomic # 1 Polarization: 12.26 SS G_CDS: -4.64 Total: 7.61 kcal
Atomic # 6 Polarization: -4.52 SS G_CDS: -2.45 Total: -6.97 kcal
Atomic # 7 Polarization: -47.21 SS G_CDS: 0.21 Total: -47.00 kcal
Atomic # 8 Polarization: -12.31 SS G_CDS: 0.06 Total: -12.25 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -31.37 -7.24 -38.61 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000847405401.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.555 kcal
(2) G-P(sol) polarization free energy of solvation -31.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds