Wall clock time and date at job start Mon Mar 30 2020 04:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34635 * 120.00045 * 2 1 4 4 C 1.47398 * 120.00221 * 169.11192 * 3 2 1 5 5 C 1.40139 * 120.94581 * 315.82417 * 4 3 2 6 6 C 1.38002 * 118.96499 * 179.75279 * 5 4 3 7 7 N 1.31888 * 120.92431 * 0.53746 * 6 5 4 8 8 C 1.31883 * 122.11423 * 359.73087 * 7 6 5 9 9 C 1.38003 * 120.92489 * 359.97438 * 8 7 6 10 10 C 1.46650 * 119.99917 * 180.02562 * 2 1 3 11 11 O 1.21666 * 119.99876 * 172.87230 * 10 2 1 12 12 N 1.34773 * 120.00273 * 352.86335 * 10 2 1 13 13 C 1.46502 * 120.00568 * 180.02562 * 12 10 2 14 14 H 1.09004 * 109.46936 * 34.99693 * 13 12 10 15 15 C 1.52998 * 109.46945 * 275.00468 * 13 12 10 16 16 C 1.50698 * 109.47372 * 154.99781 * 13 12 10 17 17 H 1.07997 * 120.00066 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99541 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00364 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99643 * 180.02562 * 18 16 13 21 21 H 1.48492 * 109.47227 * 270.00251 * 20 18 16 22 22 H 1.48504 * 109.47070 * 30.00663 * 20 18 16 23 23 H 1.48498 * 109.46596 * 150.00259 * 20 18 16 24 24 H 1.08995 * 109.47219 * 269.99500 * 1 2 3 25 25 H 1.09004 * 109.47384 * 30.00063 * 1 2 3 26 26 H 1.09005 * 109.47094 * 149.99448 * 1 2 3 27 27 H 1.08004 * 119.99875 * 349.10986 * 3 2 1 28 28 H 1.08000 * 120.51989 * 359.97438 * 5 4 3 29 29 H 1.07992 * 119.53882 * 180.26734 * 6 5 4 30 30 H 1.08002 * 119.53859 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.51927 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.99715 * 0.02562 * 12 10 2 33 33 H 1.09001 * 109.47553 * 59.99582 * 15 13 12 34 34 H 1.09000 * 109.47132 * 179.97438 * 15 13 12 35 35 H 1.09004 * 109.46670 * 299.99387 * 15 13 12 36 36 H 0.97000 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1802 1.1660 0.0000 4 6 3.6343 1.1775 0.2411 5 6 4.2015 0.4041 1.2629 6 6 5.5683 0.4419 1.4493 7 7 6.3353 1.1992 0.6894 8 6 5.8431 1.9466 -0.2794 9 6 4.4883 1.9664 -0.5412 10 6 2.2402 -1.2700 -0.0006 11 8 3.4498 -1.2740 -0.1313 12 7 1.5742 -2.4328 0.1439 13 6 2.3067 -3.7015 0.1439 14 1 3.2750 -3.5620 0.6246 15 6 2.5158 -4.1697 -1.2976 16 6 1.5157 -4.7383 0.8992 17 1 0.5625 -4.4783 1.3352 18 6 2.0086 -6.0190 1.0326 19 7 3.1691 -6.3358 0.5012 20 14 1.0277 -7.3044 1.9682 21 1 1.4123 -7.2735 3.4022 22 1 -0.4224 -7.0120 1.8381 23 1 1.3137 -8.6496 1.4079 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6547 2.0929 -0.1767 28 1 3.5790 -0.2146 1.8923 29 1 6.0157 -0.1538 2.2312 30 1 6.5098 2.5508 -0.8768 31 1 4.0923 2.5811 -1.3359 32 1 0.6098 -2.4296 0.2479 33 1 3.0879 -3.4198 -1.8439 34 1 3.0611 -5.1134 -1.2976 35 1 1.5474 -4.3092 -1.7783 36 1 3.5160 -7.2367 0.5954 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847405401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:04 Heat of formation + Delta-G solvation = -5.577640 kcal Electronic energy + Delta-G solvation = -19129.388604 eV Core-core repulsion = 16192.096157 eV Total energy + Delta-G solvation = -2937.292447 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34970 -40.24200 -36.97159 -35.83243 -34.48813 -32.97648 -32.03508 -30.67529 -28.02938 -27.37146 -25.10080 -24.22889 -23.44672 -21.87954 -20.45131 -18.69930 -17.93638 -17.26265 -17.07040 -16.78416 -16.47706 -15.80651 -15.60490 -15.01719 -14.69805 -14.48045 -14.45161 -14.23257 -13.91238 -13.65177 -13.36342 -12.97013 -12.90585 -12.78904 -12.74192 -12.55449 -12.29033 -12.14008 -11.33802 -11.11928 -10.65234 -10.52511 -10.38569 -10.03729 -9.59773 -9.37761 -8.19283 -6.37261 -0.26879 0.35095 0.95433 1.44064 1.44398 1.55277 2.34502 2.41292 2.67670 2.99677 3.11493 3.60618 3.67756 3.89050 4.02779 4.18334 4.31711 4.36416 4.60063 4.71152 4.77075 4.86317 4.88118 4.91487 4.95798 5.06896 5.12040 5.28056 5.33584 5.40886 5.57812 5.61392 5.68644 5.86590 5.91405 6.07666 6.70939 6.97387 7.11824 7.30903 7.55422 8.86956 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.005334 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.471342 B = 5248.101900 C = 5847.858272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.161 4.161 3 C -0.047 4.047 4 C -0.026 4.026 5 C -0.105 4.105 6 C 0.062 3.938 7 N -0.512 5.512 8 C 0.074 3.926 9 C -0.157 4.157 10 C 0.519 3.481 11 O -0.581 6.581 12 N -0.698 5.698 13 C 0.273 3.727 14 H -0.002 1.002 15 C -0.132 4.132 16 C -0.546 4.546 17 H 0.074 0.926 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.972 3.028 21 H -0.278 1.278 22 H -0.258 1.258 23 H -0.285 1.285 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.185 0.815 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.182 0.818 31 H 0.168 0.832 32 H 0.403 0.597 33 H 0.008 0.992 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 16.488 -1.184 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.165 4.165 3 C -0.067 4.067 4 C -0.035 4.035 5 C -0.125 4.125 6 C -0.092 4.092 7 N -0.222 5.222 8 C -0.084 4.084 9 C -0.177 4.177 10 C 0.308 3.692 11 O -0.464 6.464 12 N -0.347 5.347 13 C 0.169 3.831 14 H 0.016 0.984 15 C -0.191 4.191 16 C -0.584 4.584 17 H 0.092 0.908 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.797 3.203 21 H -0.204 1.204 22 H -0.182 1.182 23 H -0.210 1.210 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.202 0.798 28 H 0.126 0.874 29 H 0.167 0.833 30 H 0.199 0.801 31 H 0.186 0.814 32 H 0.239 0.761 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.746 16.269 -1.131 16.985 hybrid contribution -1.099 -1.426 0.339 1.832 sum -5.845 14.842 -0.792 15.972 Atomic orbital electron populations 1.20889 0.87338 1.04593 1.04000 1.22198 0.98412 0.91266 1.04577 1.22471 0.90701 0.98586 0.94899 1.19563 0.95053 0.94535 0.94315 1.22047 0.96364 0.95857 0.98260 1.22582 0.90836 0.97043 0.98728 1.67485 1.41132 1.07161 1.06390 1.23109 0.94347 0.96474 0.94467 1.22537 0.94324 1.00203 1.00619 1.19150 0.87427 0.85654 0.76987 1.90823 1.15627 1.87844 1.52082 1.46315 1.11396 1.06305 1.70657 1.18298 0.91501 0.80200 0.93093 0.98447 1.21882 0.99297 1.00553 0.97330 1.21533 1.06343 0.95445 1.35089 0.90825 1.25815 0.95936 1.00595 0.96243 1.70062 1.19792 1.20755 1.45089 0.85338 0.79271 0.77524 0.78174 1.20374 1.18170 1.21046 0.89189 0.87853 0.91666 0.79751 0.87390 0.83259 0.80134 0.81417 0.76052 0.97305 0.91631 0.94117 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.47 71.24 0.67 -1.26 16 2 C -0.16 -4.27 5.91 -18.49 -0.11 -4.38 16 3 C -0.05 -1.08 9.48 23.86 0.23 -0.86 16 4 C -0.03 -0.77 4.53 -19.94 -0.09 -0.86 16 5 C -0.11 -3.68 6.73 22.68 0.15 -3.53 16 6 C 0.06 2.22 11.17 84.63 0.95 3.17 16 7 N -0.51 -17.50 10.34 -196.14 -2.03 -19.53 16 8 C 0.07 2.02 11.17 84.63 0.95 2.97 16 9 C -0.16 -3.95 9.90 22.68 0.22 -3.73 16 10 C 0.52 20.28 6.79 86.44 0.59 20.86 16 11 O -0.58 -27.47 11.86 -4.24 -0.05 -27.52 16 12 N -0.70 -28.69 4.99 -450.13 -2.25 -30.94 16 13 C 0.27 14.17 2.56 44.24 0.11 14.28 16 14 H 0.00 -0.15 7.58 -2.39 -0.02 -0.16 16 15 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 16 C -0.55 -28.77 8.73 25.60 0.22 -28.54 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 18 C 0.01 0.76 5.30 84.65 0.45 1.21 16 19 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 20 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 26 H 0.06 1.21 7.00 -2.38 -0.02 1.19 16 27 H 0.19 2.35 8.05 -2.91 -0.02 2.32 16 28 H 0.11 4.02 7.16 -2.91 -0.02 4.00 16 29 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 30 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.40 13.92 6.82 -92.71 -0.63 13.29 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -71.84 305.75 3.41 -68.43 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.45 Total: 25.38 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.01 Total: -6.80 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.03 Total: -103.33 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -71.84 3.41 -68.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847405401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.853 kcal (2) G-P(sol) polarization free energy of solvation -71.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds