Wall clock time and date at job start Mon Mar 30 2020 04:48:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.34635 * 120.00045 * 2 1
4 4 C 1.47398 * 120.00221 * 169.11192 * 3 2 1
5 5 C 1.40139 * 120.94581 * 315.82417 * 4 3 2
6 6 C 1.38002 * 118.96499 * 179.75279 * 5 4 3
7 7 N 1.31888 * 120.92431 * 0.53746 * 6 5 4
8 8 C 1.31883 * 122.11423 * 359.73087 * 7 6 5
9 9 C 1.38003 * 120.92489 * 359.97438 * 8 7 6
10 10 C 1.46650 * 119.99917 * 180.02562 * 2 1 3
11 11 O 1.21666 * 119.99876 * 172.87230 * 10 2 1
12 12 N 1.34773 * 120.00273 * 352.86335 * 10 2 1
13 13 C 1.46502 * 120.00568 * 180.02562 * 12 10 2
14 14 H 1.09004 * 109.46936 * 34.99693 * 13 12 10
15 15 C 1.52998 * 109.46945 * 275.00468 * 13 12 10
16 16 C 1.50698 * 109.47372 * 154.99781 * 13 12 10
17 17 H 1.07997 * 120.00066 * 0.02562 * 16 13 12
18 18 C 1.37878 * 119.99541 * 179.97438 * 16 13 12
19 19 N 1.31517 * 120.00364 * 0.02562 * 18 16 13
20 20 Si 1.86806 * 119.99643 * 180.02562 * 18 16 13
21 21 H 1.48492 * 109.47227 * 270.00251 * 20 18 16
22 22 H 1.48504 * 109.47070 * 30.00663 * 20 18 16
23 23 H 1.48498 * 109.46596 * 150.00259 * 20 18 16
24 24 H 1.08995 * 109.47219 * 269.99500 * 1 2 3
25 25 H 1.09004 * 109.47384 * 30.00063 * 1 2 3
26 26 H 1.09005 * 109.47094 * 149.99448 * 1 2 3
27 27 H 1.08004 * 119.99875 * 349.10986 * 3 2 1
28 28 H 1.08000 * 120.51989 * 359.97438 * 5 4 3
29 29 H 1.07992 * 119.53882 * 180.26734 * 6 5 4
30 30 H 1.08002 * 119.53859 * 180.02562 * 8 7 6
31 31 H 1.07997 * 120.51927 * 179.97438 * 9 8 7
32 32 H 0.97004 * 119.99715 * 0.02562 * 12 10 2
33 33 H 1.09001 * 109.47553 * 59.99582 * 15 13 12
34 34 H 1.09000 * 109.47132 * 179.97438 * 15 13 12
35 35 H 1.09004 * 109.46670 * 299.99387 * 15 13 12
36 36 H 0.97000 * 119.99944 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1802 1.1660 0.0000
4 6 3.6343 1.1775 0.2411
5 6 4.2015 0.4041 1.2629
6 6 5.5683 0.4419 1.4493
7 7 6.3353 1.1992 0.6894
8 6 5.8431 1.9466 -0.2794
9 6 4.4883 1.9664 -0.5412
10 6 2.2402 -1.2700 -0.0006
11 8 3.4498 -1.2740 -0.1313
12 7 1.5742 -2.4328 0.1439
13 6 2.3067 -3.7015 0.1439
14 1 3.2750 -3.5620 0.6246
15 6 2.5158 -4.1697 -1.2976
16 6 1.5157 -4.7383 0.8992
17 1 0.5625 -4.4783 1.3352
18 6 2.0086 -6.0190 1.0326
19 7 3.1691 -6.3358 0.5012
20 14 1.0277 -7.3044 1.9682
21 1 1.4123 -7.2735 3.4022
22 1 -0.4224 -7.0120 1.8381
23 1 1.3137 -8.6496 1.4079
24 1 -0.3633 -0.0001 1.0276
25 1 -0.3634 0.8900 -0.5138
26 1 -0.3633 -0.8900 -0.5139
27 1 1.6547 2.0929 -0.1767
28 1 3.5790 -0.2146 1.8923
29 1 6.0157 -0.1538 2.2312
30 1 6.5098 2.5508 -0.8768
31 1 4.0923 2.5811 -1.3359
32 1 0.6098 -2.4296 0.2479
33 1 3.0879 -3.4198 -1.8439
34 1 3.0611 -5.1134 -1.2976
35 1 1.5474 -4.3092 -1.7783
36 1 3.5160 -7.2367 0.5954
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000847405401.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:48:04
Heat of formation + Delta-G solvation = -5.577640 kcal
Electronic energy + Delta-G solvation = -19129.388604 eV
Core-core repulsion = 16192.096157 eV
Total energy + Delta-G solvation = -2937.292447 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.34970 -40.24200 -36.97159 -35.83243 -34.48813 -32.97648 -32.03508 -30.67529
-28.02938 -27.37146 -25.10080 -24.22889 -23.44672 -21.87954 -20.45131 -18.69930
-17.93638 -17.26265 -17.07040 -16.78416 -16.47706 -15.80651 -15.60490 -15.01719
-14.69805 -14.48045 -14.45161 -14.23257 -13.91238 -13.65177 -13.36342 -12.97013
-12.90585 -12.78904 -12.74192 -12.55449 -12.29033 -12.14008 -11.33802 -11.11928
-10.65234 -10.52511 -10.38569 -10.03729 -9.59773 -9.37761 -8.19283 -6.37261
-0.26879 0.35095 0.95433 1.44064 1.44398 1.55277 2.34502 2.41292
2.67670 2.99677 3.11493 3.60618 3.67756 3.89050 4.02779 4.18334
4.31711 4.36416 4.60063 4.71152 4.77075 4.86317 4.88118 4.91487
4.95798 5.06896 5.12040 5.28056 5.33584 5.40886 5.57812 5.61392
5.68644 5.86590 5.91405 6.07666 6.70939 6.97387 7.11824 7.30903
7.55422 8.86956
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.025277 B = 0.005334 C = 0.004787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1107.471342 B = 5248.101900 C = 5847.858272
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.161 4.161
3 C -0.047 4.047
4 C -0.026 4.026
5 C -0.105 4.105
6 C 0.062 3.938
7 N -0.512 5.512
8 C 0.074 3.926
9 C -0.157 4.157
10 C 0.519 3.481
11 O -0.581 6.581
12 N -0.698 5.698
13 C 0.273 3.727
14 H -0.002 1.002
15 C -0.132 4.132
16 C -0.546 4.546
17 H 0.074 0.926
18 C 0.014 3.986
19 N -0.919 5.919
20 Si 0.972 3.028
21 H -0.278 1.278
22 H -0.258 1.258
23 H -0.285 1.285
24 H 0.090 0.910
25 H 0.103 0.897
26 H 0.064 0.936
27 H 0.185 0.815
28 H 0.108 0.892
29 H 0.150 0.850
30 H 0.182 0.818
31 H 0.168 0.832
32 H 0.403 0.597
33 H 0.008 0.992
34 H 0.065 0.935
35 H 0.040 0.960
36 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.593 16.488 -1.184 17.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.165 4.165
3 C -0.067 4.067
4 C -0.035 4.035
5 C -0.125 4.125
6 C -0.092 4.092
7 N -0.222 5.222
8 C -0.084 4.084
9 C -0.177 4.177
10 C 0.308 3.692
11 O -0.464 6.464
12 N -0.347 5.347
13 C 0.169 3.831
14 H 0.016 0.984
15 C -0.191 4.191
16 C -0.584 4.584
17 H 0.092 0.908
18 C -0.186 4.186
19 N -0.557 5.557
20 Si 0.797 3.203
21 H -0.204 1.204
22 H -0.182 1.182
23 H -0.210 1.210
24 H 0.108 0.892
25 H 0.121 0.879
26 H 0.083 0.917
27 H 0.202 0.798
28 H 0.126 0.874
29 H 0.167 0.833
30 H 0.199 0.801
31 H 0.186 0.814
32 H 0.239 0.761
33 H 0.027 0.973
34 H 0.084 0.916
35 H 0.059 0.941
36 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.746 16.269 -1.131 16.985
hybrid contribution -1.099 -1.426 0.339 1.832
sum -5.845 14.842 -0.792 15.972
Atomic orbital electron populations
1.20889 0.87338 1.04593 1.04000 1.22198 0.98412 0.91266 1.04577
1.22471 0.90701 0.98586 0.94899 1.19563 0.95053 0.94535 0.94315
1.22047 0.96364 0.95857 0.98260 1.22582 0.90836 0.97043 0.98728
1.67485 1.41132 1.07161 1.06390 1.23109 0.94347 0.96474 0.94467
1.22537 0.94324 1.00203 1.00619 1.19150 0.87427 0.85654 0.76987
1.90823 1.15627 1.87844 1.52082 1.46315 1.11396 1.06305 1.70657
1.18298 0.91501 0.80200 0.93093 0.98447 1.21882 0.99297 1.00553
0.97330 1.21533 1.06343 0.95445 1.35089 0.90825 1.25815 0.95936
1.00595 0.96243 1.70062 1.19792 1.20755 1.45089 0.85338 0.79271
0.77524 0.78174 1.20374 1.18170 1.21046 0.89189 0.87853 0.91666
0.79751 0.87390 0.83259 0.80134 0.81417 0.76052 0.97305 0.91631
0.94117 0.92587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.94 9.47 71.24 0.67 -1.26 16
2 C -0.16 -4.27 5.91 -18.49 -0.11 -4.38 16
3 C -0.05 -1.08 9.48 23.86 0.23 -0.86 16
4 C -0.03 -0.77 4.53 -19.94 -0.09 -0.86 16
5 C -0.11 -3.68 6.73 22.68 0.15 -3.53 16
6 C 0.06 2.22 11.17 84.63 0.95 3.17 16
7 N -0.51 -17.50 10.34 -196.14 -2.03 -19.53 16
8 C 0.07 2.02 11.17 84.63 0.95 2.97 16
9 C -0.16 -3.95 9.90 22.68 0.22 -3.73 16
10 C 0.52 20.28 6.79 86.44 0.59 20.86 16
11 O -0.58 -27.47 11.86 -4.24 -0.05 -27.52 16
12 N -0.70 -28.69 4.99 -450.13 -2.25 -30.94 16
13 C 0.27 14.17 2.56 44.24 0.11 14.28 16
14 H 0.00 -0.15 7.58 -2.39 -0.02 -0.16 16
15 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16
16 C -0.55 -28.77 8.73 25.60 0.22 -28.54 16
17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16
18 C 0.01 0.76 5.30 84.65 0.45 1.21 16
19 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16
20 Si 0.97 41.82 29.54 68.60 2.03 43.84 16
21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16
22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16
23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
25 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16
26 H 0.06 1.21 7.00 -2.38 -0.02 1.19 16
27 H 0.19 2.35 8.05 -2.91 -0.02 2.32 16
28 H 0.11 4.02 7.16 -2.91 -0.02 4.00 16
29 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16
30 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16
31 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16
32 H 0.40 13.92 6.82 -92.71 -0.63 13.29 16
33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16
34 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16
35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16
36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16
Total: -1.00 -71.84 305.75 3.41 -68.43
By element:
Atomic # 1 Polarization: 24.93 SS G_CDS: 0.45 Total: 25.38 kcal
Atomic # 6 Polarization: -11.81 SS G_CDS: 5.01 Total: -6.80 kcal
Atomic # 7 Polarization: -99.30 SS G_CDS: -4.03 Total: -103.33 kcal
Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.52 kcal
Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal
Total: -71.84 3.41 -68.43 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000847405401.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.853 kcal
(2) G-P(sol) polarization free energy of solvation -71.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.983 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds