Wall clock time and date at job start Mon Mar 30 2020 04:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34636 * 119.99722 * 2 1 4 4 C 1.47398 * 119.99470 * 189.79394 * 3 2 1 5 5 C 1.40145 * 120.95038 * 225.75476 * 4 3 2 6 6 C 1.38000 * 118.96616 * 179.77895 * 5 4 3 7 7 N 1.31879 * 120.92718 * 0.51195 * 6 5 4 8 8 C 1.31891 * 122.11418 * 359.74154 * 7 6 5 9 9 C 1.37995 * 120.92167 * 359.97438 * 8 7 6 10 10 C 1.46650 * 119.99827 * 179.97438 * 2 1 3 11 11 O 1.21667 * 119.99893 * 187.10509 * 10 2 1 12 12 N 1.34777 * 120.00360 * 7.11475 * 10 2 1 13 13 C 1.46498 * 120.00279 * 179.97438 * 12 10 2 14 14 H 1.08996 * 109.47150 * 324.99979 * 13 12 10 15 15 C 1.53001 * 109.46837 * 84.99723 * 13 12 10 16 16 C 1.50699 * 109.46955 * 204.99377 * 13 12 10 17 17 H 1.07994 * 120.00492 * 354.47773 * 16 13 12 18 18 C 1.37881 * 119.99982 * 174.47310 * 16 13 12 19 19 N 1.31512 * 120.00167 * 159.59457 * 18 16 13 20 20 Si 1.86809 * 119.99721 * 339.87178 * 18 16 13 21 21 H 1.48501 * 109.46749 * 269.72010 * 20 18 16 22 22 H 1.48495 * 109.47205 * 29.72315 * 20 18 16 23 23 H 1.48498 * 109.46890 * 149.72077 * 20 18 16 24 24 H 1.09007 * 109.47459 * 269.99821 * 1 2 3 25 25 H 1.09001 * 109.47213 * 29.99760 * 1 2 3 26 26 H 1.09006 * 109.47448 * 149.99589 * 1 2 3 27 27 H 1.07998 * 120.00590 * 9.80196 * 3 2 1 28 28 H 1.08002 * 120.50956 * 0.02562 * 5 4 3 29 29 H 1.07997 * 119.53569 * 180.23164 * 6 5 4 30 30 H 1.07994 * 119.53636 * 180.02562 * 8 7 6 31 31 H 1.08004 * 120.51606 * 179.97438 * 9 8 7 32 32 H 0.97005 * 119.99759 * 359.97438 * 12 10 2 33 33 H 1.09004 * 109.46743 * 174.04820 * 15 13 12 34 34 H 1.08996 * 109.46986 * 294.04181 * 15 13 12 35 35 H 1.09005 * 109.47326 * 54.04742 * 15 13 12 36 36 H 0.96996 * 119.99643 * 355.20925 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1801 1.1660 0.0000 4 6 3.6380 1.1752 -0.2172 5 6 4.4830 1.9421 0.5964 6 6 5.8423 1.9168 0.3596 7 7 6.3461 1.1933 -0.6211 8 6 5.5874 0.4613 -1.4137 9 6 4.2182 0.4218 -1.2465 10 6 2.2402 -1.2701 0.0006 11 8 3.4499 -1.2741 0.1309 12 7 1.5741 -2.4328 -0.1435 13 6 2.3067 -3.7015 -0.1435 14 1 3.2747 -3.5621 -0.6245 15 6 2.5162 -4.1694 1.2981 16 6 1.5153 -4.7385 -0.8981 17 1 0.5238 -4.5054 -1.2571 18 6 2.0572 -5.9849 -1.1304 19 7 1.2717 -7.0011 -1.4129 20 14 3.9065 -6.2317 -1.0361 21 1 4.5053 -6.0020 -2.3754 22 1 4.4852 -5.2703 -0.0635 23 1 4.1988 -7.6190 -0.5944 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6520 2.0945 0.1592 28 1 4.0770 2.5403 1.3988 29 1 6.5023 2.5013 0.9833 30 1 6.0442 -0.1158 -2.2039 31 1 3.6031 -0.1795 -1.8996 32 1 0.6096 -2.4297 -0.2472 33 1 2.9663 -5.1621 1.2961 34 1 3.1763 -3.4722 1.8140 35 1 1.5551 -4.2072 1.8112 36 1 0.3083 -6.8905 -1.3898 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847405402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:06 Heat of formation + Delta-G solvation = -6.189874 kcal Electronic energy + Delta-G solvation = -19223.488308 eV Core-core repulsion = 16286.169313 eV Total energy + Delta-G solvation = -2937.318995 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.39317 -40.30249 -37.08711 -35.88530 -34.61450 -33.14261 -32.04982 -31.19320 -28.07917 -26.94074 -25.10268 -24.21924 -23.40076 -21.72587 -20.72060 -19.38883 -18.33770 -17.27941 -17.12536 -16.71215 -16.37410 -15.69084 -15.49756 -15.11879 -14.86917 -14.59776 -14.50283 -14.24652 -14.16818 -13.97234 -13.43898 -13.35627 -13.25850 -12.82435 -12.57176 -12.51794 -12.14288 -11.68094 -11.38963 -11.21648 -10.60065 -10.50653 -10.39380 -10.09839 -9.70493 -9.42780 -8.82526 -6.45941 -0.28255 0.34513 0.90402 1.44541 1.45692 1.67194 2.32975 2.39344 2.50463 2.95437 2.98849 3.57973 3.66457 3.83609 4.00554 4.15954 4.29503 4.33718 4.45571 4.54973 4.66072 4.74469 4.76697 4.81204 4.88686 4.93604 5.05356 5.09012 5.24637 5.31660 5.39092 5.54874 5.62774 5.67911 5.86642 5.99525 6.50778 6.83672 7.11720 7.24573 7.41968 8.55283 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.006248 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.412549 B = 4480.258440 C = 5342.780394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.164 4.164 3 C -0.043 4.043 4 C -0.026 4.026 5 C -0.157 4.157 6 C 0.076 3.924 7 N -0.511 5.511 8 C 0.065 3.935 9 C -0.109 4.109 10 C 0.523 3.477 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.247 3.753 14 H 0.023 0.977 15 C -0.143 4.143 16 C -0.616 4.616 17 H 0.042 0.958 18 C 0.002 3.998 19 N -0.923 5.923 20 Si 1.069 2.931 21 H -0.274 1.274 22 H -0.259 1.259 23 H -0.278 1.278 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.184 0.816 28 H 0.166 0.834 29 H 0.181 0.819 30 H 0.154 0.846 31 H 0.110 0.890 32 H 0.402 0.598 33 H 0.048 0.952 34 H 0.033 0.967 35 H 0.051 0.949 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 19.735 4.350 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.167 4.167 3 C -0.062 4.062 4 C -0.034 4.034 5 C -0.177 4.177 6 C -0.082 4.082 7 N -0.221 5.221 8 C -0.089 4.089 9 C -0.129 4.129 10 C 0.312 3.688 11 O -0.457 6.457 12 N -0.347 5.347 13 C 0.142 3.858 14 H 0.041 0.959 15 C -0.202 4.202 16 C -0.654 4.654 17 H 0.060 0.940 18 C -0.200 4.200 19 N -0.557 5.557 20 Si 0.892 3.108 21 H -0.200 1.200 22 H -0.184 1.184 23 H -0.204 1.204 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.201 0.799 28 H 0.184 0.816 29 H 0.198 0.802 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.238 0.762 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.783 18.541 4.066 19.184 hybrid contribution -2.753 0.237 0.011 2.763 sum 0.031 18.778 4.077 19.215 Atomic orbital electron populations 1.20868 0.87761 1.04281 1.03954 1.22132 0.98176 0.91387 1.05010 1.22459 0.90882 0.98526 0.94337 1.19540 0.94789 0.94634 0.94436 1.22516 0.94398 1.00233 1.00527 1.23088 0.94134 0.96369 0.94597 1.67498 1.41363 1.07555 1.05733 1.22621 0.90802 0.96989 0.98488 1.22059 0.96359 0.96107 0.98344 1.19081 0.87443 0.85445 0.76805 1.90818 1.15173 1.87773 1.51937 1.46198 1.11392 1.06028 1.71047 1.18742 0.92604 0.81272 0.93218 0.95902 1.22250 1.00124 0.99675 0.98165 1.22175 1.03256 0.99242 1.40750 0.93963 1.26688 1.09220 0.91636 0.92433 1.70923 1.05722 1.32129 1.46896 0.83708 0.71948 0.76777 0.78416 1.20024 1.18378 1.20362 0.89387 0.88032 0.91870 0.79870 0.81598 0.80235 0.82918 0.87198 0.76179 0.93353 0.94749 0.92981 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.76 71.24 0.69 -1.24 16 2 C -0.16 -4.11 5.93 -18.49 -0.11 -4.22 16 3 C -0.04 -0.91 9.47 23.86 0.23 -0.69 16 4 C -0.03 -0.70 4.49 -19.94 -0.09 -0.79 16 5 C -0.16 -3.62 9.90 22.68 0.22 -3.40 16 6 C 0.08 1.91 11.17 84.63 0.95 2.86 16 7 N -0.51 -16.16 10.34 -196.15 -2.03 -18.19 16 8 C 0.07 2.12 11.17 84.63 0.95 3.07 16 9 C -0.11 -3.50 6.74 22.67 0.15 -3.34 16 10 C 0.52 19.04 6.86 86.44 0.59 19.64 16 11 O -0.57 -24.66 11.86 -4.24 -0.05 -24.71 16 12 N -0.70 -27.45 5.02 -450.14 -2.26 -29.71 16 13 C 0.25 11.74 2.11 44.25 0.09 11.84 16 14 H 0.02 1.20 6.02 -2.39 -0.01 1.19 16 15 C -0.14 -6.44 8.89 71.98 0.64 -5.80 16 16 C -0.62 -33.28 8.98 25.60 0.23 -33.05 16 17 H 0.04 2.40 7.96 -2.91 -0.02 2.37 16 18 C 0.00 0.12 5.26 84.66 0.44 0.57 16 19 N -0.92 -55.23 13.70 21.45 0.29 -54.93 16 20 Si 1.07 50.75 26.30 68.60 1.80 52.56 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.77 5.84 99.48 0.58 -11.19 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 26 H 0.06 1.22 6.46 -2.38 -0.02 1.21 16 27 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 28 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.15 4.53 8.06 -2.91 -0.02 4.50 16 31 H 0.11 3.75 7.27 -2.91 -0.02 3.73 16 32 H 0.40 14.04 6.52 -92.70 -0.60 13.43 16 33 H 0.05 2.20 5.56 -2.39 -0.01 2.18 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.26 15.59 8.73 -92.71 -0.81 14.78 16 Total: -1.00 -70.69 301.25 3.07 -67.62 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.32 Total: 21.93 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 4.99 Total: -14.56 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -4.00 Total: -102.83 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 1.80 Total: 52.56 kcal Total: -70.69 3.07 -67.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847405402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.428 kcal (2) G-P(sol) polarization free energy of solvation -70.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds