Wall clock time and date at job start Mon Mar 30 2020 04:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34803 * 120.00160 * 2 1 4 4 C 1.47213 * 120.00152 * 169.06600 * 3 2 1 5 5 C 1.40267 * 120.58474 * 315.69323 * 4 3 2 6 6 C 1.38294 * 118.26353 * 179.75983 * 5 4 3 7 7 C 1.38393 * 119.33252 * 0.55957 * 6 5 4 8 8 N 1.31943 * 121.13903 * 359.67745 * 7 6 5 9 9 C 1.31658 * 121.90314 * 0.02562 * 8 7 6 10 10 C 1.46430 * 119.99928 * 180.02562 * 2 1 3 11 11 O 1.21704 * 119.99894 * 172.85912 * 10 2 1 12 12 N 1.34776 * 120.00228 * 353.13066 * 10 2 1 13 13 C 1.46502 * 120.00064 * 179.72696 * 12 10 2 14 14 H 1.08993 * 109.46944 * 34.99955 * 13 12 10 15 15 C 1.53001 * 109.46849 * 274.99904 * 13 12 10 16 16 C 1.50701 * 109.46775 * 155.00117 * 13 12 10 17 17 H 1.07997 * 120.00220 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99666 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99858 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00015 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47012 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47203 * 120.00256 * 20 18 16 23 23 H 1.48497 * 109.46826 * 240.00458 * 20 18 16 24 24 H 1.08998 * 109.46704 * 269.99617 * 1 2 3 25 25 H 1.08992 * 109.47237 * 29.99578 * 1 2 3 26 26 H 1.09000 * 109.47162 * 149.99834 * 1 2 3 27 27 H 1.08005 * 119.99813 * 349.06888 * 3 2 1 28 28 H 1.08002 * 120.86759 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.32897 * 180.24472 * 6 5 4 30 30 H 1.07993 * 119.42664 * 179.70200 * 7 6 5 31 31 H 1.08004 * 119.73083 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.99878 * 359.72465 * 12 10 2 33 33 H 1.09002 * 109.46778 * 60.00429 * 15 13 12 34 34 H 1.08998 * 109.46741 * 179.97438 * 15 13 12 35 35 H 1.09002 * 109.47229 * 299.99802 * 15 13 12 36 36 H 0.97003 * 119.99693 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6331 1.1790 0.2418 5 6 4.1918 0.4044 1.2692 6 6 5.5621 0.4475 1.4507 7 6 6.3297 1.2544 0.6291 8 7 5.7773 1.9768 -0.3269 9 6 4.4789 1.9667 -0.5446 10 6 2.2391 -1.2681 -0.0006 11 8 3.4491 -1.2722 -0.1316 12 7 1.5725 -2.4312 0.1385 13 6 2.3044 -3.7003 0.1319 14 1 3.2729 -3.5636 0.6128 15 6 2.5125 -4.1615 -1.3120 16 6 1.5131 -4.7403 0.8824 17 1 0.5606 -4.4818 1.3208 18 6 2.0053 -6.0220 1.0094 19 7 3.1655 -6.3367 0.4759 20 14 1.0248 -7.3111 1.9403 21 1 -0.2366 -6.7078 2.4404 22 1 0.7061 -8.4419 1.0321 23 1 1.8253 -7.8083 3.0880 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6557 2.0943 -0.1774 28 1 3.5685 -0.2130 1.8991 29 1 6.0278 -0.1386 2.2291 30 1 7.3994 1.2929 0.7726 31 1 4.0639 2.5723 -1.3367 32 1 0.6081 -2.4280 0.2430 33 1 3.0848 -3.4092 -1.8548 34 1 3.0574 -5.1055 -1.3169 35 1 1.5439 -4.2982 -1.7929 36 1 3.5119 -7.2383 0.5656 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847406058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:57 Heat of formation + Delta-G solvation = 13.502120 kcal Electronic energy + Delta-G solvation = -19131.952175 eV Core-core repulsion = 16195.487089 eV Total energy + Delta-G solvation = -2936.465086 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04435 -38.81049 -35.25295 -34.38232 -32.68830 -31.77317 -31.04993 -28.77257 -26.74988 -25.30198 -23.77149 -23.00336 -22.09264 -20.11284 -18.84530 -17.20228 -16.54835 -16.04803 -15.71914 -15.37857 -14.67665 -14.26130 -14.13333 -13.77439 -13.39075 -13.09101 -12.94015 -12.57780 -12.53769 -12.30921 -12.14900 -11.72919 -11.32257 -11.12664 -10.99302 -10.78919 -10.37470 -10.28066 -10.01393 -9.37757 -9.08379 -9.04266 -8.90021 -8.59396 -7.98659 -7.90072 -6.16386 -4.26033 0.87635 1.64900 2.09009 3.20494 3.28450 3.30861 3.86377 4.08291 4.17506 4.36031 4.66037 4.86297 5.11558 5.15989 5.19617 5.25578 5.27113 5.49196 5.57380 5.62996 5.84334 5.92656 6.00909 6.30206 6.35265 6.51526 6.69047 6.80419 6.93611 7.00854 7.11499 7.41042 7.52786 7.65855 7.87420 8.10888 8.25397 8.61976 8.73983 9.07659 9.41912 10.89539 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.005320 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.912542 B = 5261.534178 C = 5854.545621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.159 4.159 3 C -0.056 4.056 4 C -0.104 4.104 5 C 0.007 3.993 6 C -0.181 4.181 7 C 0.098 3.902 8 N -0.499 5.499 9 C 0.105 3.895 10 C 0.529 3.471 11 O -0.544 6.544 12 N -0.699 5.699 13 C 0.264 3.736 14 H 0.049 0.951 15 C -0.146 4.146 16 C -0.534 4.534 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.283 1.283 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.389 0.611 33 H 0.014 0.986 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 13.613 0.925 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.106 4.106 5 C -0.019 4.019 6 C -0.201 4.201 7 C -0.059 4.059 8 N -0.207 5.207 9 C -0.052 4.052 10 C 0.315 3.685 11 O -0.424 6.424 12 N -0.346 5.346 13 C 0.162 3.838 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.222 0.778 33 H 0.033 0.967 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.630 13.893 0.286 13.991 hybrid contribution -1.564 -1.536 0.940 2.385 sum -3.194 12.357 1.226 12.822 Atomic orbital electron populations 1.20808 0.90754 1.03099 1.02650 1.22193 0.96390 0.93917 1.03701 1.21944 0.91999 0.96963 0.96766 1.19770 0.94109 0.99002 0.97761 1.21525 0.94961 0.91101 0.94321 1.21925 0.94633 1.01324 1.02202 1.22635 0.99935 0.92501 0.90840 1.67514 1.12951 1.21817 1.18458 1.22727 0.88776 0.96360 0.97339 1.18220 0.87589 0.84324 0.78374 1.90825 1.13612 1.87130 1.50854 1.46598 1.10853 1.07284 1.69894 1.18757 0.93174 0.78094 0.93751 0.93336 1.22069 0.99190 1.02099 0.97134 1.21242 1.05961 0.94947 1.35103 0.92063 1.24893 0.95033 0.98332 0.95434 1.69916 1.18074 1.20176 1.43854 0.86396 0.79939 0.81250 0.79531 1.19724 1.20845 1.20849 0.90571 0.91272 0.91232 0.84962 0.85774 0.85238 0.83438 0.83383 0.77801 0.96670 0.89148 0.95517 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.47 36.01 0.34 -0.91 16 2 C -0.16 -2.31 5.90 -102.54 -0.61 -2.91 16 3 C -0.06 -0.74 9.45 -37.16 -0.35 -1.09 16 4 C -0.10 -1.62 4.51 -104.91 -0.47 -2.09 16 5 C 0.01 0.11 6.76 -38.80 -0.26 -0.15 16 6 C -0.18 -2.79 10.10 -39.50 -0.40 -3.19 16 7 C 0.10 1.46 11.17 -17.45 -0.19 1.27 16 8 N -0.50 -8.03 10.34 -12.83 -0.13 -8.17 16 9 C 0.10 1.57 10.96 -17.04 -0.19 1.39 16 10 C 0.53 10.31 6.77 -12.96 -0.09 10.22 16 11 O -0.54 -12.39 11.87 5.19 0.06 -12.33 16 12 N -0.70 -14.30 4.99 -56.32 -0.28 -14.58 16 13 C 0.26 6.63 2.56 -69.08 -0.18 6.45 16 14 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 16 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -24.72 11.32 55.43 0.63 -24.09 16 20 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.58 8.07 -51.93 -0.42 0.17 16 26 H 0.07 0.77 6.98 -51.93 -0.36 0.40 16 27 H 0.13 1.25 8.05 -52.48 -0.42 0.83 16 28 H 0.12 2.13 7.17 -52.49 -0.38 1.76 16 29 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.39 6.91 6.81 -40.82 -0.28 6.63 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -31.29 305.70 -7.23 -38.52 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.64 Total: 7.58 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.45 Total: -6.91 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.21 Total: -46.84 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.06 Total: -12.33 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.29 -7.23 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847406058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.022 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds