Wall clock time and date at job start Mon Mar 30 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34803 * 120.00160 * 2 1 4 4 C 1.47213 * 120.00152 * 169.06600 * 3 2 1 5 5 C 1.40267 * 120.58474 * 315.69323 * 4 3 2 6 6 C 1.38294 * 118.26353 * 179.75983 * 5 4 3 7 7 C 1.38393 * 119.33252 * 0.55957 * 6 5 4 8 8 N 1.31943 * 121.13903 * 359.67745 * 7 6 5 9 9 C 1.31658 * 121.90314 * 0.02562 * 8 7 6 10 10 C 1.46430 * 119.99928 * 180.02562 * 2 1 3 11 11 O 1.21704 * 119.99894 * 172.85912 * 10 2 1 12 12 N 1.34776 * 120.00228 * 353.13066 * 10 2 1 13 13 C 1.46502 * 120.00064 * 179.72696 * 12 10 2 14 14 H 1.08993 * 109.46944 * 34.99955 * 13 12 10 15 15 C 1.53001 * 109.46849 * 274.99904 * 13 12 10 16 16 C 1.50701 * 109.46775 * 155.00117 * 13 12 10 17 17 H 1.07997 * 120.00220 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99666 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99858 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00015 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47012 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47203 * 120.00256 * 20 18 16 23 23 H 1.48497 * 109.46826 * 240.00458 * 20 18 16 24 24 H 1.08998 * 109.46704 * 269.99617 * 1 2 3 25 25 H 1.08992 * 109.47237 * 29.99578 * 1 2 3 26 26 H 1.09000 * 109.47162 * 149.99834 * 1 2 3 27 27 H 1.08005 * 119.99813 * 349.06888 * 3 2 1 28 28 H 1.08002 * 120.86759 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.32897 * 180.24472 * 6 5 4 30 30 H 1.07993 * 119.42664 * 179.70200 * 7 6 5 31 31 H 1.08004 * 119.73083 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.99878 * 359.72465 * 12 10 2 33 33 H 1.09002 * 109.46778 * 60.00429 * 15 13 12 34 34 H 1.08998 * 109.46741 * 179.97438 * 15 13 12 35 35 H 1.09002 * 109.47229 * 299.99802 * 15 13 12 36 36 H 0.97003 * 119.99693 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6331 1.1790 0.2418 5 6 4.1918 0.4044 1.2692 6 6 5.5621 0.4475 1.4507 7 6 6.3297 1.2544 0.6291 8 7 5.7773 1.9768 -0.3269 9 6 4.4789 1.9667 -0.5446 10 6 2.2391 -1.2681 -0.0006 11 8 3.4491 -1.2722 -0.1316 12 7 1.5725 -2.4312 0.1385 13 6 2.3044 -3.7003 0.1319 14 1 3.2729 -3.5636 0.6128 15 6 2.5125 -4.1615 -1.3120 16 6 1.5131 -4.7403 0.8824 17 1 0.5606 -4.4818 1.3208 18 6 2.0053 -6.0220 1.0094 19 7 3.1655 -6.3367 0.4759 20 14 1.0248 -7.3111 1.9403 21 1 -0.2366 -6.7078 2.4404 22 1 0.7061 -8.4419 1.0321 23 1 1.8253 -7.8083 3.0880 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6557 2.0943 -0.1774 28 1 3.5685 -0.2130 1.8991 29 1 6.0278 -0.1386 2.2291 30 1 7.3994 1.2929 0.7726 31 1 4.0639 2.5723 -1.3367 32 1 0.6081 -2.4280 0.2430 33 1 3.0848 -3.4092 -1.8548 34 1 3.0574 -5.1055 -1.3169 35 1 1.5439 -4.2982 -1.7929 36 1 3.5119 -7.2383 0.5656 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847406058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:56 Heat of formation + Delta-G solvation = -6.722638 kcal Electronic energy + Delta-G solvation = -19132.829186 eV Core-core repulsion = 16195.487089 eV Total energy + Delta-G solvation = -2937.342097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34259 -40.23046 -36.94419 -35.73357 -34.46664 -33.07408 -32.29004 -30.58762 -27.73832 -27.37465 -25.11547 -24.29030 -23.44391 -21.85513 -20.41228 -18.54703 -18.08131 -17.37734 -17.21995 -17.01231 -16.30447 -15.75423 -15.52427 -14.97010 -14.72392 -14.47837 -14.31679 -13.92157 -13.88693 -13.60365 -13.50090 -13.13930 -12.97558 -12.88293 -12.74562 -12.41083 -12.30937 -12.13130 -11.29983 -11.09366 -10.67950 -10.59773 -10.30098 -10.23131 -9.65207 -9.17512 -8.19790 -6.37528 -0.29195 0.43414 0.91101 1.42953 1.44006 1.56038 2.34704 2.42347 2.69847 2.98540 3.11068 3.58829 3.81177 3.93524 4.02090 4.07223 4.24232 4.35505 4.59228 4.71209 4.79688 4.85986 4.88196 4.88736 5.03597 5.07099 5.17587 5.29544 5.37047 5.40335 5.58240 5.62350 5.69363 5.84369 5.91640 6.07562 6.70936 6.98398 7.07168 7.30748 7.56110 8.86686 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.005320 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.912542 B = 5261.534178 C = 5854.545621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.173 4.173 3 C -0.035 4.035 4 C -0.119 4.119 5 C -0.014 4.014 6 C -0.194 4.194 7 C 0.092 3.908 8 N -0.516 5.516 9 C 0.099 3.901 10 C 0.521 3.479 11 O -0.584 6.584 12 N -0.699 5.699 13 C 0.273 3.727 14 H -0.001 1.001 15 C -0.132 4.132 16 C -0.545 4.545 17 H 0.073 0.927 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.972 3.028 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.284 1.284 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.183 0.817 28 H 0.107 0.893 29 H 0.140 0.860 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.403 0.597 33 H 0.008 0.992 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 15.044 0.951 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C -0.055 4.055 4 C -0.121 4.121 5 C -0.041 4.041 6 C -0.214 4.214 7 C -0.065 4.065 8 N -0.225 5.225 9 C -0.057 4.057 10 C 0.311 3.689 11 O -0.467 6.467 12 N -0.347 5.347 13 C 0.169 3.831 14 H 0.016 0.984 15 C -0.191 4.191 16 C -0.583 4.583 17 H 0.091 0.909 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.797 3.203 21 H -0.182 1.182 22 H -0.205 1.205 23 H -0.210 1.210 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.200 0.800 28 H 0.125 0.875 29 H 0.158 0.842 30 H 0.192 0.808 31 H 0.197 0.803 32 H 0.239 0.761 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.775 15.355 0.316 15.816 hybrid contribution -0.794 -1.914 0.931 2.272 sum -4.569 13.441 1.246 14.251 Atomic orbital electron populations 1.20855 0.87526 1.04439 1.03836 1.22136 0.98295 0.91313 1.05854 1.22402 0.90709 0.98376 0.93977 1.20101 0.95834 0.98723 0.97445 1.21586 0.95510 0.91710 0.95251 1.22166 0.94592 1.01770 1.02895 1.23076 1.01258 0.91862 0.90258 1.67577 1.13686 1.22340 1.18870 1.23249 0.88512 0.96263 0.97680 1.19091 0.87418 0.85621 0.76801 1.90808 1.15650 1.87893 1.52327 1.46329 1.11396 1.06294 1.70717 1.18299 0.91534 0.80209 0.93053 0.98356 1.21885 0.99272 1.00544 0.97378 1.21563 1.06344 0.95300 1.35110 0.90882 1.25811 0.95927 1.00612 0.96232 1.70068 1.19788 1.20687 1.45158 0.85289 0.78767 0.78318 0.77921 1.18213 1.20480 1.20979 0.89373 0.88009 0.91811 0.80035 0.87457 0.84188 0.80760 0.80334 0.76087 0.97323 0.91598 0.94189 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.47 71.24 0.67 -1.30 16 2 C -0.17 -4.67 5.90 -18.52 -0.11 -4.78 16 3 C -0.03 -0.82 9.45 23.84 0.23 -0.59 16 4 C -0.12 -3.56 4.51 -20.05 -0.09 -3.65 16 5 C -0.01 -0.49 6.76 22.78 0.15 -0.34 16 6 C -0.19 -6.13 10.10 22.32 0.23 -5.90 16 7 C 0.09 2.71 11.17 84.71 0.95 3.66 16 8 N -0.52 -16.09 10.34 -194.52 -2.01 -18.10 16 9 C 0.10 2.82 10.96 85.10 0.93 3.76 16 10 C 0.52 20.45 6.77 86.38 0.58 21.04 16 11 O -0.58 -27.50 11.87 -4.36 -0.05 -27.55 16 12 N -0.70 -28.81 4.99 -450.32 -2.25 -31.05 16 13 C 0.27 14.13 2.56 44.25 0.11 14.25 16 14 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 15 C -0.13 -6.80 9.26 71.98 0.67 -6.13 16 16 C -0.55 -28.66 8.73 25.60 0.22 -28.43 16 17 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 18 C 0.01 0.75 5.30 84.65 0.45 1.20 16 19 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 20 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 1.20 8.07 -2.39 -0.02 1.18 16 26 H 0.06 1.22 6.98 -2.39 -0.02 1.21 16 27 H 0.18 2.45 8.05 -2.91 -0.02 2.43 16 28 H 0.11 3.89 7.17 -2.91 -0.02 3.87 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.40 14.03 6.81 -92.70 -0.63 13.40 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -70.33 305.70 3.41 -66.92 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.46 Total: 25.88 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.00 Total: -7.24 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -4.02 Total: -101.71 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -70.33 3.41 -66.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847406058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.197 kcal (2) G-P(sol) polarization free energy of solvation -70.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds