Wall clock time and date at job start Mon Mar 30 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34805 * 119.99713 * 2 1 4 4 C 1.47209 * 120.00213 * 7.60957 * 3 2 1 5 5 C 1.40267 * 120.58497 * 32.28814 * 4 3 2 6 6 C 1.38291 * 118.26277 * 179.75914 * 5 4 3 7 7 C 1.38391 * 119.33567 * 0.56717 * 6 5 4 8 8 N 1.31935 * 121.13738 * 359.67361 * 7 6 5 9 9 C 1.31658 * 121.90798 * 0.02562 * 8 7 6 10 10 C 1.46426 * 120.00090 * 179.97438 * 2 1 3 11 11 O 1.21701 * 119.99696 * 179.97438 * 10 2 1 12 12 N 1.34771 * 120.00089 * 0.02562 * 10 2 1 13 13 C 1.46504 * 120.00160 * 180.02562 * 12 10 2 14 14 H 1.09002 * 109.46706 * 324.99423 * 13 12 10 15 15 C 1.52991 * 109.47503 * 84.99130 * 13 12 10 16 16 C 1.50695 * 109.46971 * 204.99614 * 13 12 10 17 17 H 1.07995 * 120.00308 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99895 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00202 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00095 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47034 * 90.00162 * 20 18 16 22 22 H 1.48504 * 109.47371 * 210.00092 * 20 18 16 23 23 H 1.48503 * 109.47382 * 330.00364 * 20 18 16 24 24 H 1.09000 * 109.47166 * 266.20281 * 1 2 3 25 25 H 1.09002 * 109.47141 * 26.20727 * 1 2 3 26 26 H 1.09008 * 109.47161 * 146.20505 * 1 2 3 27 27 H 1.08001 * 120.00000 * 187.60797 * 3 2 1 28 28 H 1.07999 * 120.86472 * 0.02562 * 5 4 3 29 29 H 1.08004 * 120.32915 * 180.26486 * 6 5 4 30 30 H 1.08001 * 119.42682 * 179.70172 * 7 6 5 31 31 H 1.08000 * 119.73867 * 179.97438 * 9 8 7 32 32 H 0.97004 * 120.00082 * 359.97438 * 12 10 2 33 33 H 1.09000 * 109.47674 * 180.02562 * 15 13 12 34 34 H 1.09000 * 109.47663 * 300.00467 * 15 13 12 35 35 H 1.09002 * 109.47184 * 59.99943 * 15 13 12 36 36 H 0.96996 * 120.00503 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1675 0.0000 4 6 1.4546 2.4367 0.1688 5 6 0.2963 2.4967 0.9576 6 6 -0.3452 3.7149 1.0874 7 6 0.1638 4.8225 0.4320 8 7 1.2527 4.7366 -0.3080 9 6 1.9037 3.6023 -0.4591 10 6 2.2391 -1.2681 0.0006 11 8 3.4561 -1.2680 0.0001 12 7 1.5653 -2.4352 0.0006 13 6 2.2978 -3.7040 0.0017 14 1 3.2089 -3.5980 -0.5872 15 6 2.6608 -4.0821 1.4390 16 6 1.4343 -4.7831 -0.5988 17 1 0.4392 -4.5476 -0.9462 18 6 1.9146 -6.0712 -0.7048 19 7 3.1261 -6.3582 -0.2814 20 14 0.8439 -7.4090 -1.4486 21 1 1.0725 -7.4681 -2.9147 22 1 1.1929 -8.7179 -0.8401 23 1 -0.5850 -7.1047 -1.1824 24 1 -0.3633 -0.0681 1.0254 25 1 -0.3633 0.9220 -0.4538 26 1 -0.3634 -0.8541 -0.5717 27 1 3.2538 1.1716 -0.1238 28 1 -0.0822 1.6154 1.4541 29 1 -1.2373 3.8000 1.6902 30 1 -0.3388 5.7735 0.5284 31 1 2.7914 3.5718 -1.0735 32 1 0.5953 -2.4353 0.0006 33 1 3.2062 -5.0259 1.4399 34 1 3.2854 -3.3016 1.8735 35 1 1.7497 -4.1881 2.0280 36 1 3.4642 -7.2642 -0.3563 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847406061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:02 Heat of formation + Delta-G solvation = 8.584474 kcal Electronic energy + Delta-G solvation = -18471.437527 eV Core-core repulsion = 15534.759196 eV Total energy + Delta-G solvation = -2936.678331 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37883 -39.03075 -35.58448 -34.75460 -32.51806 -32.19001 -31.05606 -28.74738 -27.40329 -25.29141 -24.14337 -23.51461 -22.01825 -20.03780 -18.81690 -17.27876 -17.08804 -16.22942 -15.85508 -15.37699 -15.07246 -14.59184 -14.40780 -13.94099 -13.76929 -13.56613 -13.10552 -12.77258 -12.53330 -12.37451 -11.86727 -11.74093 -11.49411 -11.10163 -11.00675 -10.78051 -10.33595 -10.29048 -10.25793 -9.82525 -9.64354 -9.13667 -9.06735 -8.57676 -8.42172 -7.92089 -6.14706 -4.24321 0.47007 1.06554 1.89350 3.22959 3.29597 3.31223 3.62761 3.89220 3.99691 4.26271 4.35917 4.62701 4.69463 4.75736 4.87621 4.98236 5.17430 5.20779 5.32022 5.50428 5.53338 5.74132 5.83645 5.85897 5.97636 6.43672 6.49109 6.50277 6.80690 6.93949 7.12289 7.41693 7.53359 7.66909 7.76019 7.88766 8.12164 8.62164 8.74663 9.06900 9.43262 10.91347 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043828 B = 0.003729 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.714610 B = 7506.764817 C = 7783.113729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 C -0.063 4.063 4 C -0.104 4.104 5 C -0.069 4.069 6 C -0.175 4.175 7 C 0.093 3.907 8 N -0.487 5.487 9 C 0.114 3.886 10 C 0.535 3.465 11 O -0.554 6.554 12 N -0.700 5.700 13 C 0.263 3.737 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.389 0.611 33 H 0.091 0.909 34 H 0.015 0.985 35 H 0.026 0.974 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 16.674 2.562 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C -0.084 4.084 4 C -0.106 4.106 5 C -0.095 4.095 6 C -0.195 4.195 7 C -0.063 4.063 8 N -0.195 5.195 9 C -0.044 4.044 10 C 0.321 3.679 11 O -0.435 6.435 12 N -0.347 5.347 13 C 0.161 3.839 14 H 0.068 0.932 15 C -0.206 4.206 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.223 0.777 33 H 0.109 0.891 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.003 17.201 2.163 18.698 hybrid contribution -1.343 -1.584 0.081 2.078 sum -8.346 15.618 2.244 17.850 Atomic orbital electron populations 1.21183 0.91584 1.03364 1.02271 1.22113 0.96172 0.93923 1.02480 1.21978 1.00139 0.89228 0.97013 1.20082 0.96221 0.95105 0.99209 1.22207 0.93243 0.98521 0.95491 1.22101 1.01885 0.93645 1.01825 1.22830 0.92249 0.98629 0.92584 1.67631 1.07813 1.27637 1.16413 1.23087 0.98447 0.86903 0.95935 1.18053 0.87502 0.84167 0.78147 1.90773 1.13461 1.87781 1.51498 1.46513 1.10083 1.06914 1.71218 1.18780 0.92990 0.78039 0.94073 0.93237 1.22076 0.99155 1.02034 0.97291 1.21206 1.01182 0.93425 1.41537 0.92080 1.24891 0.95177 0.98497 0.95124 1.69899 1.15958 1.20477 1.45701 0.86439 0.80426 0.80876 0.79296 1.20525 1.21044 1.19836 0.90657 0.90871 0.90839 0.84151 0.83734 0.84642 0.82899 0.82288 0.77726 0.89074 0.96612 0.95458 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 7.65 36.00 0.28 -1.16 16 2 C -0.14 -2.14 5.94 -102.55 -0.61 -2.75 16 3 C -0.06 -0.86 9.38 -37.16 -0.35 -1.21 16 4 C -0.10 -1.20 5.27 -104.91 -0.55 -1.75 16 5 C -0.07 -0.68 7.71 -38.80 -0.30 -0.98 16 6 C -0.17 -1.47 10.09 -39.51 -0.40 -1.87 16 7 C 0.09 0.86 11.17 -17.45 -0.19 0.67 16 8 N -0.49 -5.63 10.34 -12.83 -0.13 -5.76 16 9 C 0.11 1.29 10.96 -17.04 -0.19 1.10 16 10 C 0.54 10.78 7.69 -12.97 -0.10 10.68 16 11 O -0.55 -13.35 15.91 5.19 0.08 -13.27 16 12 N -0.70 -14.57 5.01 -56.33 -0.28 -14.85 16 13 C 0.26 6.69 2.56 -69.09 -0.18 6.52 16 14 H 0.05 1.46 7.57 -51.93 -0.39 1.06 16 15 C -0.15 -3.66 9.26 37.15 0.34 -3.31 16 16 C -0.54 -14.11 8.73 -34.44 -0.30 -14.41 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 20 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H 0.08 0.71 6.92 -51.93 -0.36 0.35 16 25 H 0.07 0.74 5.96 -51.93 -0.31 0.43 16 26 H 0.07 0.83 6.89 -51.92 -0.36 0.47 16 27 H 0.14 2.01 7.54 -52.49 -0.40 1.62 16 28 H 0.15 1.26 5.34 -52.49 -0.28 0.98 16 29 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 30 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.39 6.96 6.71 -40.82 -0.27 6.68 16 33 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -31.61 304.69 -7.12 -38.73 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.34 Total: 6.08 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.64 Total: -6.80 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.21 Total: -44.78 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.61 -7.12 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847406061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.311 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds