Wall clock time and date at job start Mon Mar 30 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34805 * 119.99713 * 2 1 4 4 C 1.47209 * 120.00213 * 7.60957 * 3 2 1 5 5 C 1.40267 * 120.58497 * 32.28814 * 4 3 2 6 6 C 1.38291 * 118.26277 * 179.75914 * 5 4 3 7 7 C 1.38391 * 119.33567 * 0.56717 * 6 5 4 8 8 N 1.31935 * 121.13738 * 359.67361 * 7 6 5 9 9 C 1.31658 * 121.90798 * 0.02562 * 8 7 6 10 10 C 1.46426 * 120.00090 * 179.97438 * 2 1 3 11 11 O 1.21701 * 119.99696 * 179.97438 * 10 2 1 12 12 N 1.34771 * 120.00089 * 0.02562 * 10 2 1 13 13 C 1.46504 * 120.00160 * 180.02562 * 12 10 2 14 14 H 1.09002 * 109.46706 * 324.99423 * 13 12 10 15 15 C 1.52991 * 109.47503 * 84.99130 * 13 12 10 16 16 C 1.50695 * 109.46971 * 204.99614 * 13 12 10 17 17 H 1.07995 * 120.00308 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99895 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00202 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00095 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47034 * 90.00162 * 20 18 16 22 22 H 1.48504 * 109.47371 * 210.00092 * 20 18 16 23 23 H 1.48503 * 109.47382 * 330.00364 * 20 18 16 24 24 H 1.09000 * 109.47166 * 266.20281 * 1 2 3 25 25 H 1.09002 * 109.47141 * 26.20727 * 1 2 3 26 26 H 1.09008 * 109.47161 * 146.20505 * 1 2 3 27 27 H 1.08001 * 120.00000 * 187.60797 * 3 2 1 28 28 H 1.07999 * 120.86472 * 0.02562 * 5 4 3 29 29 H 1.08004 * 120.32915 * 180.26486 * 6 5 4 30 30 H 1.08001 * 119.42682 * 179.70172 * 7 6 5 31 31 H 1.08000 * 119.73867 * 179.97438 * 9 8 7 32 32 H 0.97004 * 120.00082 * 359.97438 * 12 10 2 33 33 H 1.09000 * 109.47674 * 180.02562 * 15 13 12 34 34 H 1.09000 * 109.47663 * 300.00467 * 15 13 12 35 35 H 1.09002 * 109.47184 * 59.99943 * 15 13 12 36 36 H 0.96996 * 120.00503 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1675 0.0000 4 6 1.4546 2.4367 0.1688 5 6 0.2963 2.4967 0.9576 6 6 -0.3452 3.7149 1.0874 7 6 0.1638 4.8225 0.4320 8 7 1.2527 4.7366 -0.3080 9 6 1.9037 3.6023 -0.4591 10 6 2.2391 -1.2681 0.0006 11 8 3.4561 -1.2680 0.0001 12 7 1.5653 -2.4352 0.0006 13 6 2.2978 -3.7040 0.0017 14 1 3.2089 -3.5980 -0.5872 15 6 2.6608 -4.0821 1.4390 16 6 1.4343 -4.7831 -0.5988 17 1 0.4392 -4.5476 -0.9462 18 6 1.9146 -6.0712 -0.7048 19 7 3.1261 -6.3582 -0.2814 20 14 0.8439 -7.4090 -1.4486 21 1 1.0725 -7.4681 -2.9147 22 1 1.1929 -8.7179 -0.8401 23 1 -0.5850 -7.1047 -1.1824 24 1 -0.3633 -0.0681 1.0254 25 1 -0.3633 0.9220 -0.4538 26 1 -0.3634 -0.8541 -0.5717 27 1 3.2538 1.1716 -0.1238 28 1 -0.0822 1.6154 1.4541 29 1 -1.2373 3.8000 1.6902 30 1 -0.3388 5.7735 0.5284 31 1 2.7914 3.5718 -1.0735 32 1 0.5953 -2.4353 0.0006 33 1 3.2062 -5.0259 1.4399 34 1 3.2854 -3.3016 1.8735 35 1 1.7497 -4.1881 2.0280 36 1 3.4642 -7.2642 -0.3563 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847406061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:02 Heat of formation + Delta-G solvation = -12.166831 kcal Electronic energy + Delta-G solvation = -18472.337371 eV Core-core repulsion = 15534.759196 eV Total energy + Delta-G solvation = -2937.578175 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27262 -40.54350 -36.96403 -36.38323 -34.38574 -32.97506 -32.17508 -30.49911 -28.34886 -27.36371 -25.32915 -24.28918 -23.39924 -21.72896 -20.33824 -18.60676 -17.88379 -17.72623 -17.29943 -16.85250 -16.17133 -16.05635 -15.93186 -15.04014 -14.80982 -14.60997 -14.44577 -14.33918 -13.82851 -13.59119 -13.37336 -12.98463 -12.90378 -12.79986 -12.68878 -12.47664 -12.27668 -12.12550 -11.22302 -11.13351 -10.89447 -10.60955 -10.58339 -10.32110 -9.84043 -9.32652 -8.18651 -6.36723 -0.46540 0.32494 0.83511 1.45243 1.45821 1.56672 2.33213 2.34995 2.60445 2.90189 3.11963 3.50269 3.74985 3.87607 3.93048 4.00817 4.07175 4.19968 4.52850 4.68362 4.73101 4.80049 4.82483 4.90005 4.95896 5.06050 5.07232 5.16866 5.37952 5.43397 5.48932 5.58360 5.67585 5.75369 5.89688 6.07673 6.70703 6.92247 6.99985 7.30203 7.49920 8.87923 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043828 B = 0.003729 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.714610 B = 7506.764817 C = 7783.113729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.163 4.163 3 C -0.039 4.039 4 C -0.123 4.123 5 C -0.067 4.067 6 C -0.166 4.166 7 C 0.093 3.907 8 N -0.512 5.512 9 C 0.106 3.894 10 C 0.531 3.469 11 O -0.605 6.605 12 N -0.696 5.696 13 C 0.268 3.732 14 H -0.003 1.003 15 C -0.133 4.133 16 C -0.548 4.548 17 H 0.075 0.925 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.974 3.026 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.258 1.258 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.160 0.840 29 H 0.172 0.828 30 H 0.183 0.817 31 H 0.164 0.836 32 H 0.406 0.594 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.042 0.958 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.580 18.002 2.986 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.166 4.166 3 C -0.059 4.059 4 C -0.125 4.125 5 C -0.093 4.093 6 C -0.185 4.185 7 C -0.063 4.063 8 N -0.221 5.221 9 C -0.051 4.051 10 C 0.320 3.680 11 O -0.490 6.490 12 N -0.344 5.344 13 C 0.165 3.835 14 H 0.015 0.985 15 C -0.192 4.192 16 C -0.586 4.586 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.799 3.201 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.181 1.181 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.141 0.859 28 H 0.177 0.823 29 H 0.189 0.811 30 H 0.200 0.800 31 H 0.181 0.819 32 H 0.242 0.758 33 H 0.086 0.914 34 H 0.030 0.970 35 H 0.062 0.938 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.330 18.556 2.587 21.395 hybrid contribution -0.275 -1.812 -0.029 1.833 sum -10.605 16.744 2.558 19.984 Atomic orbital electron populations 1.21203 0.88376 1.04101 1.03847 1.21859 0.98013 0.91143 1.05579 1.22015 0.99572 0.90183 0.94170 1.19935 0.97497 0.93834 1.01247 1.22460 0.92270 0.99885 0.94640 1.22469 1.02478 0.92408 1.01174 1.23451 0.91320 1.00324 0.91201 1.67682 1.09082 1.27603 1.17704 1.23206 0.98793 0.86979 0.96133 1.18853 0.87155 0.85552 0.76430 1.90740 1.15927 1.88618 1.53680 1.46227 1.10746 1.05834 1.71589 1.18385 0.91613 0.80129 0.93386 0.98462 1.21897 0.99387 1.00584 0.97364 1.21539 1.01731 0.93775 1.41588 0.90711 1.25828 0.96382 1.00995 0.95415 1.70054 1.17788 1.21019 1.46774 0.85313 0.79213 0.77532 0.78087 1.20411 1.20936 1.18147 0.88415 0.89275 0.91011 0.85921 0.82286 0.81071 0.79992 0.81887 0.75752 0.91389 0.97032 0.93842 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 7.65 71.24 0.55 -1.83 16 2 C -0.16 -4.78 5.94 -18.52 -0.11 -4.89 16 3 C -0.04 -1.05 9.38 23.84 0.22 -0.83 16 4 C -0.12 -2.64 5.27 -20.05 -0.11 -2.75 16 5 C -0.07 -1.11 7.71 22.78 0.18 -0.93 16 6 C -0.17 -2.08 10.09 22.32 0.23 -1.85 16 7 C 0.09 1.40 11.17 84.71 0.95 2.34 16 8 N -0.51 -10.82 10.34 -194.52 -2.01 -12.83 16 9 C 0.11 2.28 10.96 85.10 0.93 3.21 16 10 C 0.53 21.98 7.69 86.38 0.66 22.64 16 11 O -0.61 -30.80 15.91 -4.35 -0.07 -30.87 16 12 N -0.70 -29.33 5.01 -450.35 -2.26 -31.59 16 13 C 0.27 14.12 2.56 44.24 0.11 14.23 16 14 H 0.00 -0.16 7.57 -2.39 -0.02 -0.18 16 15 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 16 C -0.55 -29.04 8.73 25.60 0.22 -28.82 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 18 C 0.01 0.74 5.30 84.66 0.45 1.19 16 19 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 20 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H 0.10 1.50 6.92 -2.39 -0.02 1.48 16 25 H 0.09 1.51 5.96 -2.39 -0.01 1.49 16 26 H 0.07 1.46 6.89 -2.38 -0.02 1.44 16 27 H 0.12 3.70 7.54 -2.91 -0.02 3.68 16 28 H 0.16 2.13 5.34 -2.91 -0.02 2.11 16 29 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.41 14.18 6.71 -92.71 -0.62 13.56 16 33 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -71.23 304.69 3.36 -67.87 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.48 Total: 20.76 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.95 Total: -4.45 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.03 Total: -97.03 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.07 Total: -30.87 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -71.23 3.36 -67.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847406061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.705 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds