Wall clock time and date at job start Mon Mar 30 2020 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.50700 * 109.46920 * 119.99838 * 2 1 3 5 5 O 1.21287 * 120.00143 * 87.23225 * 4 2 1 6 6 N 1.34781 * 120.00022 * 267.22529 * 4 2 1 7 7 C 1.47060 * 136.05559 * 174.57094 * 6 4 2 8 8 C 1.53498 * 87.98446 * 153.13907 * 7 6 4 9 9 C 1.50704 * 114.20541 * 139.65505 * 8 7 6 10 10 H 1.07998 * 119.99847 * 266.39746 * 9 8 7 11 11 C 1.37877 * 120.00107 * 86.40495 * 9 8 7 12 12 N 1.31513 * 119.99937 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99865 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46859 * 89.99736 * 13 11 9 15 15 H 1.48505 * 109.46892 * 209.99726 * 13 11 9 16 16 H 1.48499 * 109.47087 * 329.99807 * 13 11 9 17 17 C 1.47068 * 136.05616 * 354.94259 * 6 4 2 18 18 C 1.50700 * 109.47199 * 239.99687 * 2 1 3 19 19 C 1.38228 * 119.61555 * 325.00452 * 18 2 1 20 20 C 1.38627 * 119.16114 * 179.97438 * 19 18 2 21 21 C 1.38677 * 118.42015 * 359.97438 * 20 19 18 22 22 C 1.38183 * 119.16078 * 359.97438 * 21 20 19 23 23 N 1.31846 * 119.62091 * 144.72635 * 18 2 1 24 24 H 1.09007 * 109.47285 * 185.38570 * 1 2 3 25 25 H 1.09002 * 109.47185 * 305.38220 * 1 2 3 26 26 H 1.08992 * 109.47393 * 65.38168 * 1 2 3 27 27 H 1.08998 * 113.47307 * 267.91869 * 7 6 4 28 28 H 1.09008 * 113.47226 * 38.36332 * 7 6 4 29 29 H 1.09007 * 114.38643 * 272.46496 * 8 7 6 30 30 H 0.97004 * 119.99676 * 180.02562 * 12 11 9 31 31 H 1.08994 * 113.46937 * 321.64408 * 17 6 4 32 32 H 1.08998 * 113.46211 * 92.08227 * 17 6 4 33 33 H 1.08003 * 120.42194 * 359.97438 * 19 18 2 34 34 H 1.07998 * 120.79709 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.41993 * 180.02562 * 21 20 19 36 36 H 1.07997 * 119.61749 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.1866 -1.9133 1.2158 6 7 2.3101 -0.0090 2.3474 7 6 2.7076 -0.3282 3.7268 8 6 3.3831 1.0486 3.7932 9 6 3.1970 1.7654 5.1057 10 1 2.3836 2.4652 5.2282 11 6 4.0654 1.5280 6.1501 12 7 5.0557 0.6756 6.0010 13 14 3.8351 2.4171 7.7767 14 1 2.9488 1.6152 8.6580 15 1 5.1548 2.5971 8.4335 16 1 3.2188 3.7457 7.5317 17 6 2.3430 1.4122 2.7246 18 6 2.0323 -0.7105 -1.2304 19 6 1.3319 -1.7934 -1.7277 20 6 1.8022 -2.4397 -2.8604 21 6 2.9644 -1.9700 -3.4535 22 6 3.6102 -0.8809 -2.9001 23 7 3.1318 -0.2885 -1.8233 24 1 -0.3634 -1.0232 0.0965 25 1 -0.3634 0.5951 0.8379 26 1 -0.3634 0.4281 -0.9342 27 1 1.8637 -0.4310 4.4090 28 1 3.4092 -1.1596 3.7951 29 1 4.4133 1.0621 3.4372 30 1 5.6664 0.5083 6.7359 31 1 2.7344 2.0604 1.9407 32 1 1.4019 1.7728 3.1397 33 1 0.4297 -2.1319 -1.2400 34 1 1.2756 -3.2882 -3.2716 35 1 3.3593 -2.4489 -4.3374 36 1 4.5156 -0.5088 -3.3563 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855470840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:42 Heat of formation + Delta-G solvation = 31.510777 kcal Electronic energy + Delta-G solvation = -18855.333747 eV Core-core repulsion = 15919.649575 eV Total energy + Delta-G solvation = -2935.684172 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48428 -39.26110 -37.16924 -34.11292 -32.66752 -32.45445 -30.03820 -28.84268 -25.66997 -24.97537 -24.54994 -23.34627 -22.03901 -20.14752 -18.20192 -16.93225 -16.89437 -16.52107 -16.01648 -15.62693 -14.83512 -14.70443 -14.40877 -13.86419 -13.64308 -13.54694 -13.03455 -12.63973 -12.27556 -12.20063 -11.99223 -11.55692 -11.47841 -11.36715 -11.20128 -10.94208 -10.74357 -10.28514 -9.92108 -9.67028 -9.40928 -9.17597 -9.09519 -8.77511 -8.56742 -7.84474 -6.15302 -4.21963 1.10961 1.31083 3.14035 3.25288 3.32834 3.34713 3.47411 3.92677 4.22299 4.35119 4.70098 4.81534 4.96326 5.03906 5.14199 5.15030 5.19201 5.27664 5.56588 5.65717 5.78768 5.79886 5.93615 6.00539 6.16101 6.18697 6.20864 6.29782 6.42743 6.58152 6.68489 6.78436 6.92720 7.56873 7.81902 8.02944 8.19271 8.52990 8.76065 8.81882 9.44833 10.94364 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.004129 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.823377 B = 6779.011116 C = 6955.361541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 H 0.106 0.894 4 C 0.543 3.457 5 O -0.558 6.558 6 N -0.640 5.640 7 C 0.105 3.895 8 C 0.035 3.965 9 C -0.519 4.519 10 H 0.064 0.936 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.092 3.908 18 C 0.153 3.847 19 C -0.146 4.146 20 C -0.078 4.078 21 C -0.180 4.180 22 C 0.098 3.902 23 N -0.480 5.480 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.658 -1.589 -15.450 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 H 0.124 0.876 4 C 0.331 3.669 5 O -0.437 6.437 6 N -0.373 5.373 7 C -0.017 4.017 8 C 0.016 3.984 9 C -0.557 4.557 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.520 5.520 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.031 4.031 18 C 0.015 3.985 19 C -0.166 4.166 20 C -0.104 4.104 21 C -0.200 4.200 22 C -0.059 4.059 23 N -0.189 5.189 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.010 -1.703 -15.203 16.828 hybrid contribution -0.446 -0.422 0.524 0.807 sum -7.456 -2.125 -14.679 16.601 Atomic orbital electron populations 1.21742 0.91610 1.03080 1.02965 1.20098 0.97364 1.00878 0.89905 0.87573 1.19637 0.77470 0.86652 0.83093 1.90650 1.54651 1.14522 1.83920 1.50018 1.65704 1.10951 1.10621 1.23567 0.97887 1.02315 0.77885 1.20344 0.94228 0.90617 0.93213 1.20892 1.13526 1.25372 0.95944 0.91783 1.25046 0.94609 0.94828 0.99083 1.69968 1.15682 1.33929 1.32436 0.86534 0.77575 0.80125 0.83428 1.20527 1.21135 1.19668 1.23449 1.00969 0.81195 0.97449 1.20629 0.90632 0.92990 0.94213 1.21928 1.01842 0.96241 0.96607 1.21554 0.95556 0.98550 0.94777 1.22101 0.97100 0.98858 1.01927 1.22698 0.98817 0.92632 0.91753 1.67428 1.11651 1.30934 1.08865 0.91595 0.91095 0.91329 0.90927 0.92284 0.91327 0.92591 0.92255 0.90618 0.84664 0.84936 0.84978 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.43 37.16 0.31 -1.34 16 2 C -0.06 -0.95 2.95 -92.93 -0.27 -1.23 16 3 H 0.11 1.63 7.69 -51.93 -0.40 1.23 16 4 C 0.54 11.03 7.09 -10.98 -0.08 10.95 16 5 O -0.56 -13.10 16.95 5.55 0.09 -13.01 16 6 N -0.64 -13.40 3.69 -185.23 -0.68 -14.08 16 7 C 0.11 2.44 8.18 -8.51 -0.07 2.37 16 8 C 0.04 0.84 3.79 -91.26 -0.35 0.49 16 9 C -0.52 -13.25 8.82 -34.44 -0.30 -13.56 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.88 -24.78 13.26 55.43 0.74 -24.05 16 13 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 C 0.09 1.78 7.76 -8.50 -0.07 1.72 16 18 C 0.15 2.44 5.38 -82.59 -0.44 1.99 16 19 C -0.15 -2.00 8.88 -39.44 -0.35 -2.35 16 20 C -0.08 -0.89 10.18 -39.28 -0.40 -1.29 16 21 C -0.18 -1.96 10.11 -39.44 -0.40 -2.36 16 22 C 0.10 1.26 11.18 -17.55 -0.20 1.07 16 23 N -0.48 -7.79 10.27 -9.48 -0.10 -7.89 16 24 H 0.07 0.79 6.80 -51.93 -0.35 0.44 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.64 8.10 -51.93 -0.42 1.22 16 28 H 0.06 1.48 8.14 -51.92 -0.42 1.05 16 29 H 0.07 1.81 8.11 -51.93 -0.42 1.39 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.06 1.04 8.00 -51.93 -0.42 0.63 16 32 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 33 H 0.14 1.66 6.44 -52.48 -0.34 1.32 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -31.57 311.19 -7.84 -39.41 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.85 Total: 1.58 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.71 Total: -1.83 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.05 Total: -46.01 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.57 -7.84 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855470840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.918 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds