Wall clock time and date at job start Mon Mar 30 2020 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.50700 * 109.46920 * 119.99838 * 2 1 3 5 5 O 1.21287 * 120.00143 * 87.23225 * 4 2 1 6 6 N 1.34781 * 120.00022 * 267.22529 * 4 2 1 7 7 C 1.47060 * 136.05559 * 174.57094 * 6 4 2 8 8 C 1.53498 * 87.98446 * 153.13907 * 7 6 4 9 9 C 1.50704 * 114.20541 * 139.65505 * 8 7 6 10 10 H 1.07998 * 119.99847 * 266.39746 * 9 8 7 11 11 C 1.37877 * 120.00107 * 86.40495 * 9 8 7 12 12 N 1.31513 * 119.99937 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99865 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46859 * 89.99736 * 13 11 9 15 15 H 1.48505 * 109.46892 * 209.99726 * 13 11 9 16 16 H 1.48499 * 109.47087 * 329.99807 * 13 11 9 17 17 C 1.47068 * 136.05616 * 354.94259 * 6 4 2 18 18 C 1.50700 * 109.47199 * 239.99687 * 2 1 3 19 19 C 1.38228 * 119.61555 * 325.00452 * 18 2 1 20 20 C 1.38627 * 119.16114 * 179.97438 * 19 18 2 21 21 C 1.38677 * 118.42015 * 359.97438 * 20 19 18 22 22 C 1.38183 * 119.16078 * 359.97438 * 21 20 19 23 23 N 1.31846 * 119.62091 * 144.72635 * 18 2 1 24 24 H 1.09007 * 109.47285 * 185.38570 * 1 2 3 25 25 H 1.09002 * 109.47185 * 305.38220 * 1 2 3 26 26 H 1.08992 * 109.47393 * 65.38168 * 1 2 3 27 27 H 1.08998 * 113.47307 * 267.91869 * 7 6 4 28 28 H 1.09008 * 113.47226 * 38.36332 * 7 6 4 29 29 H 1.09007 * 114.38643 * 272.46496 * 8 7 6 30 30 H 0.97004 * 119.99676 * 180.02562 * 12 11 9 31 31 H 1.08994 * 113.46937 * 321.64408 * 17 6 4 32 32 H 1.08998 * 113.46211 * 92.08227 * 17 6 4 33 33 H 1.08003 * 120.42194 * 359.97438 * 19 18 2 34 34 H 1.07998 * 120.79709 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.41993 * 180.02562 * 21 20 19 36 36 H 1.07997 * 119.61749 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.1866 -1.9133 1.2158 6 7 2.3101 -0.0090 2.3474 7 6 2.7076 -0.3282 3.7268 8 6 3.3831 1.0486 3.7932 9 6 3.1970 1.7654 5.1057 10 1 2.3836 2.4652 5.2282 11 6 4.0654 1.5280 6.1501 12 7 5.0557 0.6756 6.0010 13 14 3.8351 2.4171 7.7767 14 1 2.9488 1.6152 8.6580 15 1 5.1548 2.5971 8.4335 16 1 3.2188 3.7457 7.5317 17 6 2.3430 1.4122 2.7246 18 6 2.0323 -0.7105 -1.2304 19 6 1.3319 -1.7934 -1.7277 20 6 1.8022 -2.4397 -2.8604 21 6 2.9644 -1.9700 -3.4535 22 6 3.6102 -0.8809 -2.9001 23 7 3.1318 -0.2885 -1.8233 24 1 -0.3634 -1.0232 0.0965 25 1 -0.3634 0.5951 0.8379 26 1 -0.3634 0.4281 -0.9342 27 1 1.8637 -0.4310 4.4090 28 1 3.4092 -1.1596 3.7951 29 1 4.4133 1.0621 3.4372 30 1 5.6664 0.5083 6.7359 31 1 2.7344 2.0604 1.9407 32 1 1.4019 1.7728 3.1397 33 1 0.4297 -2.1319 -1.2400 34 1 1.2756 -3.2882 -3.2716 35 1 3.3593 -2.4489 -4.3374 36 1 4.5156 -0.5088 -3.3563 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855470840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:42 Heat of formation + Delta-G solvation = 11.438273 kcal Electronic energy + Delta-G solvation = -18856.204156 eV Core-core repulsion = 15919.649575 eV Total energy + Delta-G solvation = -2936.554581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69475 -40.73653 -38.83416 -35.31812 -34.64233 -33.41684 -31.35797 -30.29765 -27.34870 -26.73100 -25.81675 -24.29849 -23.35378 -21.78856 -19.77679 -18.74757 -18.10303 -17.91357 -17.18057 -16.91599 -16.52406 -16.23368 -15.87760 -15.21008 -14.87716 -14.76574 -14.16988 -14.03882 -13.91913 -13.43738 -13.26938 -13.18430 -13.07528 -12.77945 -12.57893 -12.41871 -12.39256 -12.14673 -11.47676 -11.06315 -10.89183 -10.64409 -10.56879 -10.40768 -9.91651 -9.58329 -8.16516 -6.29337 0.12569 0.37233 1.48262 1.49098 1.57235 1.59968 1.95820 2.45941 2.85419 3.13661 3.18106 3.53177 3.77860 3.98619 4.11486 4.13482 4.18495 4.26878 4.30521 4.41559 4.53028 4.65483 4.71454 4.74008 4.78100 4.84731 4.87081 4.99711 5.01625 5.11362 5.23953 5.27903 5.57960 5.78902 5.80705 6.21383 6.81993 6.89848 7.02970 7.10940 7.41802 8.93991 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.004129 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.823377 B = 6779.011116 C = 6955.361541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 H 0.107 0.893 4 C 0.538 3.462 5 O -0.596 6.596 6 N -0.644 5.644 7 C 0.108 3.892 8 C 0.020 3.980 9 C -0.524 4.524 10 H 0.078 0.922 11 C 0.013 3.987 12 N -0.927 5.927 13 Si 0.964 3.036 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.257 1.257 17 C 0.113 3.887 18 C 0.120 3.880 19 C -0.158 4.158 20 C -0.079 4.079 21 C -0.169 4.169 22 C 0.080 3.920 23 N -0.518 5.518 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 -0.936 -16.966 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.073 4.073 3 H 0.125 0.875 4 C 0.329 3.671 5 O -0.478 6.478 6 N -0.376 5.376 7 C -0.015 4.015 8 C 0.001 3.999 9 C -0.562 4.562 10 H 0.096 0.904 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.789 3.211 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.181 1.181 17 C -0.009 4.009 18 C -0.017 4.017 19 C -0.178 4.178 20 C -0.105 4.105 21 C -0.188 4.188 22 C -0.077 4.077 23 N -0.228 5.228 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.732 -1.019 -16.736 18.905 hybrid contribution 0.142 -0.707 0.880 1.138 sum -8.590 -1.726 -15.856 18.116 Atomic orbital electron populations 1.21764 0.88760 1.03483 1.04692 1.20095 0.99525 1.00046 0.87587 0.87451 1.20561 0.76315 0.86455 0.83818 1.90614 1.56183 1.16426 1.84608 1.50053 1.65966 1.11609 1.10007 1.23347 0.97453 1.00702 0.80033 1.20235 0.93639 0.91551 0.94513 1.21287 1.13475 1.25083 0.96347 0.90388 1.25913 0.94364 0.95574 1.02775 1.70120 1.16968 1.35945 1.33472 0.85461 0.77222 0.79426 0.78982 1.20159 1.21578 1.18135 1.23325 1.00486 0.80678 0.96386 1.20710 0.91635 0.94531 0.94822 1.22140 1.02202 0.95890 0.97564 1.22033 0.95715 0.98981 0.93788 1.22539 0.96262 0.97586 1.02404 1.23238 0.99806 0.93408 0.91264 1.67365 1.12330 1.32561 1.10507 0.91675 0.90366 0.88719 0.90266 0.95631 0.94965 0.92833 0.90082 0.88056 0.83878 0.81491 0.81145 0.80575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.43 71.98 0.61 -2.28 16 2 C -0.05 -1.56 2.95 -12.29 -0.04 -1.60 16 3 H 0.11 3.21 7.69 -2.39 -0.02 3.19 16 4 C 0.54 22.01 7.09 87.66 0.62 22.63 16 5 O -0.60 -28.67 16.95 -3.05 -0.05 -28.73 16 6 N -0.64 -27.17 3.69 -858.31 -3.17 -30.34 16 7 C 0.11 5.16 8.18 83.18 0.68 5.84 16 8 C 0.02 0.97 3.79 -11.21 -0.04 0.93 16 9 C -0.52 -26.70 8.82 25.60 0.23 -26.48 16 10 H 0.08 3.68 7.81 -2.91 -0.02 3.66 16 11 C 0.01 0.71 5.46 84.65 0.46 1.17 16 12 N -0.93 -53.64 13.26 21.45 0.28 -53.35 16 13 Si 0.96 41.41 29.54 68.60 2.03 43.44 16 14 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 C 0.11 4.27 7.76 83.18 0.65 4.91 16 18 C 0.12 3.74 5.38 42.55 0.23 3.97 16 19 C -0.16 -4.09 8.88 22.36 0.20 -3.89 16 20 C -0.08 -1.58 10.18 22.47 0.23 -1.36 16 21 C -0.17 -3.17 10.11 22.36 0.23 -2.94 16 22 C 0.08 1.92 11.18 84.67 0.95 2.87 16 23 N -0.52 -16.55 10.27 -183.89 -1.89 -18.44 16 24 H 0.06 1.46 6.80 -2.38 -0.02 1.45 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 3.64 8.10 -2.39 -0.02 3.62 16 28 H 0.02 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.03 1.79 8.11 -2.38 -0.02 1.77 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.08 2.73 8.00 -2.39 -0.02 2.71 16 32 H 0.10 3.36 8.10 -2.39 -0.02 3.34 16 33 H 0.14 3.32 6.44 -2.91 -0.02 3.30 16 34 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -71.01 311.19 3.26 -67.75 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.07 Total: 15.89 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.99 Total: 3.78 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -4.77 Total: -102.13 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.73 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -71.01 3.26 -67.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855470840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.187 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds