Wall clock time and date at job start Mon Mar 30 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47075 * 2 1 4 4 C 1.50697 * 109.47608 * 120.00365 * 2 1 3 5 5 H 1.07999 * 119.99670 * 119.99229 * 4 2 1 6 6 C 1.37877 * 120.00051 * 300.00435 * 4 2 1 7 7 N 1.31520 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99997 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47116 * 59.99952 * 8 6 4 10 10 H 1.48502 * 109.46956 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47299 * 299.99558 * 8 6 4 12 12 C 1.50697 * 109.46971 * 240.00833 * 2 1 3 13 13 O 1.21282 * 119.99795 * 274.16310 * 12 2 1 14 14 N 1.34775 * 120.00570 * 94.16459 * 12 2 1 15 15 C 1.47587 * 134.48901 * 5.05894 * 14 12 2 16 16 C 1.53949 * 86.11782 * 155.36207 * 15 14 12 17 17 C 1.50693 * 113.74447 * 137.95090 * 16 15 14 18 18 C 1.38227 * 119.61829 * 324.05396 * 17 16 15 19 19 C 1.38631 * 119.16159 * 179.97438 * 18 17 16 20 20 C 1.38664 * 118.42028 * 359.97438 * 19 18 17 21 21 C 1.38181 * 119.16385 * 0.27888 * 20 19 18 22 22 N 1.31849 * 119.62053 * 144.02620 * 17 16 15 23 23 C 1.47584 * 134.49778 * 185.06011 * 14 12 2 24 24 H 1.09000 * 109.46914 * 185.87362 * 1 2 3 25 25 H 1.08997 * 109.47048 * 305.87091 * 1 2 3 26 26 H 1.09003 * 109.47343 * 65.87259 * 1 2 3 27 27 H 0.97003 * 119.99395 * 180.02562 * 7 6 4 28 28 H 1.08997 * 113.76818 * 41.05692 * 15 14 12 29 29 H 1.09004 * 113.87035 * 269.67011 * 15 14 12 30 30 H 1.08999 * 113.73881 * 269.15291 * 16 15 14 31 31 H 1.08002 * 120.42139 * 359.97438 * 18 17 16 32 32 H 1.08002 * 120.78734 * 180.02562 * 19 18 17 33 33 H 1.08005 * 120.41658 * 180.02562 * 20 19 18 34 34 H 1.08007 * 119.61897 * 179.69859 * 21 20 19 35 35 H 1.08998 * 113.77022 * 90.33676 * 23 14 12 36 36 H 1.08997 * 113.76547 * 318.94243 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3216 -1.1206 4.0078 9 1 3.8066 -1.1211 4.0079 10 1 1.8272 -0.4203 5.2203 11 1 1.8261 -2.5205 4.0075 12 6 2.0323 -0.7102 -1.2306 13 8 2.1625 -1.9160 -1.2241 14 7 2.3369 -0.0056 -2.3383 15 6 2.3911 1.4322 -2.6672 16 6 3.3932 1.0359 -3.7666 17 6 3.1739 1.7519 -5.0743 18 6 1.8867 2.0380 -5.4890 19 6 1.6959 2.6975 -6.6933 20 6 2.8118 3.0467 -7.4386 21 6 4.0679 2.7228 -6.9624 22 7 4.2120 2.0988 -5.8094 23 6 2.7501 -0.3616 -3.7097 24 1 -0.3633 -1.0223 0.1052 25 1 -0.3633 0.6022 0.8327 26 1 -0.3634 0.4201 -0.9379 27 1 0.7095 1.1615 3.4845 28 1 2.8245 2.0472 -1.8785 29 1 1.4529 1.8324 -3.0516 30 1 4.4331 1.0559 -3.4404 31 1 1.0403 1.7513 -4.8824 32 1 0.7016 2.9344 -7.0424 33 1 2.7005 3.5616 -8.3814 34 1 4.9420 2.9869 -7.5392 35 1 1.9166 -0.4901 -4.4003 36 1 3.4701 -1.1788 -3.7533 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913382358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:53 Heat of formation + Delta-G solvation = 32.466844 kcal Electronic energy + Delta-G solvation = -18781.081926 eV Core-core repulsion = 15845.439212 eV Total energy + Delta-G solvation = -2935.642714 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78654 -39.27131 -37.10724 -33.68830 -32.71917 -31.95421 -30.51137 -28.30314 -26.05835 -25.18024 -24.28525 -23.59720 -22.03253 -20.37679 -18.37168 -17.18370 -16.62025 -16.32336 -16.03207 -15.62500 -15.06791 -14.82020 -14.39104 -13.89759 -13.51729 -13.18225 -12.86117 -12.68768 -12.48367 -12.32199 -11.84359 -11.59666 -11.40041 -11.06929 -10.92656 -10.69719 -10.66594 -10.26199 -10.04290 -10.03369 -9.59512 -9.10594 -9.01338 -8.60071 -8.34486 -8.11757 -6.04288 -4.07878 0.89550 1.09978 3.34261 3.36301 3.38401 3.45186 3.55236 3.65995 4.12606 4.45479 4.57153 4.65253 4.67225 4.85122 4.95063 5.07291 5.22743 5.30364 5.40990 5.51304 5.59030 5.65478 5.74499 5.85816 5.93464 5.99889 6.29143 6.50128 6.53478 6.73034 6.87280 7.00414 7.48671 7.75310 7.84388 7.99138 8.18167 8.44552 8.96084 9.20217 9.56735 11.03388 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.041396 B = 0.004062 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.226146 B = 6890.862257 C = 6988.554898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.038 3.962 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.547 3.453 13 O -0.545 6.545 14 N -0.653 5.653 15 C 0.117 3.883 16 C -0.080 4.080 17 C 0.146 3.854 18 C -0.167 4.167 19 C -0.073 4.073 20 C -0.182 4.182 21 C 0.100 3.900 22 N -0.480 5.480 23 C 0.115 3.885 24 H 0.036 0.964 25 H 0.091 0.909 26 H 0.009 0.991 27 H 0.262 0.738 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.077 0.923 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 7.478 -18.586 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.017 3.983 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.340 3.660 13 O -0.421 6.421 14 N -0.392 5.392 15 C -0.007 4.007 16 C -0.099 4.099 17 C 0.008 3.992 18 C -0.187 4.187 19 C -0.099 4.099 20 C -0.201 4.201 21 C -0.057 4.057 22 N -0.189 5.189 23 C -0.009 4.009 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.172 0.828 35 H 0.095 0.905 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.215 6.594 -17.915 19.218 hybrid contribution -0.631 -0.072 0.331 0.716 sum 1.585 6.522 -17.584 18.822 Atomic orbital electron populations 1.21653 0.95994 1.01017 0.99596 1.18815 0.94188 0.96539 0.88726 0.93874 1.20989 1.31512 1.12464 0.89142 0.91552 1.24925 0.95007 0.95012 0.99034 1.69879 1.36852 1.22931 1.23702 0.86502 0.79229 0.79830 0.81578 1.20177 1.21269 1.20093 1.21868 0.73874 0.87341 0.82884 1.90548 1.53136 1.15210 1.83186 1.50277 1.71206 1.07701 1.09998 1.23170 0.97359 0.84823 0.95377 1.22208 1.02031 0.95358 0.90348 1.21040 0.88721 0.94347 0.95082 1.22040 0.98566 1.00508 0.97606 1.21594 0.99437 0.95076 0.93747 1.22132 0.93904 1.02546 1.01559 1.22758 0.96944 0.93929 0.92091 1.67509 1.34640 1.10930 1.05832 1.23014 0.97578 0.95742 0.84553 0.94469 0.89066 0.97213 0.92836 0.89223 0.89990 0.86299 0.84364 0.84793 0.84942 0.82821 0.90509 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.86 37.16 0.33 -2.69 16 2 C 0.04 0.99 2.53 -92.93 -0.23 0.75 16 3 H 0.04 1.11 7.54 -51.93 -0.39 0.72 16 4 C -0.50 -14.47 8.31 -34.44 -0.29 -14.76 16 5 H 0.07 2.00 7.24 -52.49 -0.38 1.62 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.21 11.39 55.43 0.63 -24.58 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.55 13.13 7.05 -10.99 -0.08 13.06 16 13 O -0.55 -14.92 16.82 5.56 0.09 -14.83 16 14 N -0.65 -12.15 3.61 -178.39 -0.64 -12.80 16 15 C 0.12 1.67 7.69 -2.97 -0.02 1.65 16 16 C -0.08 -1.04 4.35 -90.85 -0.39 -1.43 16 17 C 0.15 1.74 6.21 -82.59 -0.51 1.23 16 18 C -0.17 -1.69 8.68 -39.44 -0.34 -2.03 16 19 C -0.07 -0.61 10.18 -39.28 -0.40 -1.00 16 20 C -0.18 -1.43 10.11 -39.44 -0.40 -1.83 16 21 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 22 N -0.48 -5.90 10.27 -9.48 -0.10 -6.00 16 23 C 0.11 1.70 8.30 -2.97 -0.02 1.67 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.09 2.35 6.25 -51.93 -0.32 2.03 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.09 1.30 7.96 -51.93 -0.41 0.88 16 29 H 0.08 1.00 6.24 -51.93 -0.32 0.68 16 30 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.14 1.27 6.59 -52.49 -0.35 0.92 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -33.32 306.31 -7.75 -41.07 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.68 Total: -1.34 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.66 Total: -3.03 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.11 Total: -43.37 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.09 Total: -14.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.32 -7.75 -41.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913382358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.535 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds