Wall clock time and date at job start Mon Mar 30 2020 04:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47075 * 2 1 4 4 C 1.50697 * 109.47608 * 120.00365 * 2 1 3 5 5 H 1.07999 * 119.99670 * 119.99229 * 4 2 1 6 6 C 1.37877 * 120.00051 * 300.00435 * 4 2 1 7 7 N 1.31520 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99997 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47116 * 59.99952 * 8 6 4 10 10 H 1.48502 * 109.46956 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47299 * 299.99558 * 8 6 4 12 12 C 1.50697 * 109.46971 * 240.00833 * 2 1 3 13 13 O 1.21282 * 119.99795 * 274.16310 * 12 2 1 14 14 N 1.34775 * 120.00570 * 94.16459 * 12 2 1 15 15 C 1.47587 * 134.48901 * 5.05894 * 14 12 2 16 16 C 1.53949 * 86.11782 * 155.36207 * 15 14 12 17 17 C 1.50693 * 113.74447 * 137.95090 * 16 15 14 18 18 C 1.38227 * 119.61829 * 324.05396 * 17 16 15 19 19 C 1.38631 * 119.16159 * 179.97438 * 18 17 16 20 20 C 1.38664 * 118.42028 * 359.97438 * 19 18 17 21 21 C 1.38181 * 119.16385 * 0.27888 * 20 19 18 22 22 N 1.31849 * 119.62053 * 144.02620 * 17 16 15 23 23 C 1.47584 * 134.49778 * 185.06011 * 14 12 2 24 24 H 1.09000 * 109.46914 * 185.87362 * 1 2 3 25 25 H 1.08997 * 109.47048 * 305.87091 * 1 2 3 26 26 H 1.09003 * 109.47343 * 65.87259 * 1 2 3 27 27 H 0.97003 * 119.99395 * 180.02562 * 7 6 4 28 28 H 1.08997 * 113.76818 * 41.05692 * 15 14 12 29 29 H 1.09004 * 113.87035 * 269.67011 * 15 14 12 30 30 H 1.08999 * 113.73881 * 269.15291 * 16 15 14 31 31 H 1.08002 * 120.42139 * 359.97438 * 18 17 16 32 32 H 1.08002 * 120.78734 * 180.02562 * 19 18 17 33 33 H 1.08005 * 120.41658 * 180.02562 * 20 19 18 34 34 H 1.08007 * 119.61897 * 179.69859 * 21 20 19 35 35 H 1.08998 * 113.77022 * 90.33676 * 23 14 12 36 36 H 1.08997 * 113.76547 * 318.94243 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3216 -1.1206 4.0078 9 1 3.8066 -1.1211 4.0079 10 1 1.8272 -0.4203 5.2203 11 1 1.8261 -2.5205 4.0075 12 6 2.0323 -0.7102 -1.2306 13 8 2.1625 -1.9160 -1.2241 14 7 2.3369 -0.0056 -2.3383 15 6 2.3911 1.4322 -2.6672 16 6 3.3932 1.0359 -3.7666 17 6 3.1739 1.7519 -5.0743 18 6 1.8867 2.0380 -5.4890 19 6 1.6959 2.6975 -6.6933 20 6 2.8118 3.0467 -7.4386 21 6 4.0679 2.7228 -6.9624 22 7 4.2120 2.0988 -5.8094 23 6 2.7501 -0.3616 -3.7097 24 1 -0.3633 -1.0223 0.1052 25 1 -0.3633 0.6022 0.8327 26 1 -0.3634 0.4201 -0.9379 27 1 0.7095 1.1615 3.4845 28 1 2.8245 2.0472 -1.8785 29 1 1.4529 1.8324 -3.0516 30 1 4.4331 1.0559 -3.4404 31 1 1.0403 1.7513 -4.8824 32 1 0.7016 2.9344 -7.0424 33 1 2.7005 3.5616 -8.3814 34 1 4.9420 2.9869 -7.5392 35 1 1.9166 -0.4901 -4.4003 36 1 3.4701 -1.1788 -3.7533 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913382358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:52 Heat of formation + Delta-G solvation = 10.956435 kcal Electronic energy + Delta-G solvation = -18782.014687 eV Core-core repulsion = 15845.439212 eV Total energy + Delta-G solvation = -2936.575475 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81129 -40.52840 -38.71973 -35.77286 -33.47143 -33.05770 -32.36606 -29.59919 -27.31954 -27.27461 -25.42061 -24.38278 -23.61403 -21.55983 -19.85711 -18.43795 -18.09916 -17.86861 -17.26617 -16.93795 -16.41415 -16.00947 -15.80128 -15.20421 -14.84641 -14.65383 -14.20730 -13.92284 -13.72167 -13.59880 -13.48296 -12.96633 -12.90221 -12.66569 -12.62158 -12.44146 -12.30068 -12.16792 -12.04444 -11.11968 -10.75576 -10.63068 -10.39561 -10.28003 -9.85485 -9.63980 -8.18270 -6.29607 0.17107 0.42113 1.40069 1.42148 1.50211 1.83573 1.93029 2.43424 2.77892 3.10929 3.24821 3.56182 3.72999 3.90855 4.04233 4.10663 4.18947 4.32207 4.37229 4.41163 4.54157 4.60523 4.71902 4.75777 4.86191 4.90618 4.97379 5.05543 5.09733 5.33252 5.34037 5.45247 5.67414 5.83593 5.88362 6.16398 6.69814 6.78624 7.10446 7.34189 7.42966 8.87808 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.041396 B = 0.004062 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.226146 B = 6890.862257 C = 6988.554898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.534 4.534 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.544 3.456 13 O -0.593 6.593 14 N -0.657 5.657 15 C 0.115 3.885 16 C -0.059 4.059 17 C 0.126 3.874 18 C -0.173 4.173 19 C -0.073 4.073 20 C -0.171 4.171 21 C 0.086 3.914 22 N -0.512 5.512 23 C 0.114 3.886 24 H 0.019 0.981 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.176 0.824 35 H 0.102 0.898 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 9.068 -20.466 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.013 3.987 3 H 0.057 0.943 4 C -0.572 4.572 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.337 3.663 13 O -0.473 6.473 14 N -0.393 5.393 15 C -0.007 4.007 16 C -0.079 4.079 17 C -0.012 4.012 18 C -0.193 4.193 19 C -0.099 4.099 20 C -0.190 4.190 21 C -0.070 4.070 22 N -0.222 5.222 23 C -0.009 4.009 24 H 0.038 0.962 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.193 0.807 35 H 0.120 0.880 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.668 8.244 -19.838 21.547 hybrid contribution -0.436 -0.456 0.754 0.983 sum 1.231 7.788 -19.084 20.649 Atomic orbital electron populations 1.21464 0.95120 0.99755 1.00617 1.18738 0.94976 0.95916 0.89035 0.94330 1.21136 1.32368 1.12446 0.91269 0.94121 1.25583 0.94994 0.95667 1.01338 1.69945 1.36790 1.23341 1.24576 0.85635 0.78812 0.78653 0.78709 1.19845 1.19573 1.20368 1.21411 0.74184 0.86715 0.84022 1.90507 1.55584 1.16938 1.84316 1.50192 1.68989 1.09897 1.10206 1.23494 0.99259 0.82313 0.95643 1.21846 1.00848 0.94054 0.91155 1.20748 0.89703 0.95991 0.94719 1.22163 0.97812 1.00692 0.98583 1.21995 1.01073 0.93927 0.92869 1.22525 0.92992 1.01111 1.02363 1.23234 0.98791 0.93556 0.91459 1.67409 1.35368 1.12169 1.07240 1.23286 0.98385 0.96787 0.82396 0.96188 0.90671 0.93924 0.92370 0.89643 0.87033 0.87359 0.83569 0.81888 0.81649 0.80652 0.88035 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 8.86 71.98 0.64 -4.81 16 2 C 0.03 1.81 2.53 -12.29 -0.03 1.78 16 3 H 0.04 2.02 7.54 -2.39 -0.02 2.01 16 4 C -0.53 -31.70 8.31 25.60 0.21 -31.49 16 5 H 0.04 2.57 7.24 -2.91 -0.02 2.55 16 6 C 0.02 1.36 5.30 84.65 0.45 1.81 16 7 N -0.91 -51.26 11.39 21.45 0.24 -51.01 16 8 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 9 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.54 26.76 7.05 87.66 0.62 27.38 16 13 O -0.59 -33.72 16.82 -3.04 -0.05 -33.77 16 14 N -0.66 -24.42 3.61 -836.69 -3.02 -27.44 16 15 C 0.12 3.18 7.69 86.48 0.67 3.84 16 16 C -0.06 -1.50 4.35 -10.88 -0.05 -1.55 16 17 C 0.13 2.79 6.21 42.55 0.26 3.06 16 18 C -0.17 -2.99 8.68 22.36 0.19 -2.80 16 19 C -0.07 -0.93 10.18 22.47 0.23 -0.70 16 20 C -0.17 -2.03 10.11 22.36 0.23 -1.80 16 21 C 0.09 1.40 11.18 84.67 0.95 2.35 16 22 N -0.51 -11.82 10.27 -183.89 -1.89 -13.70 16 23 C 0.11 3.31 8.30 86.48 0.72 4.02 16 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 3.90 6.25 -2.39 -0.01 3.88 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.09 2.44 7.96 -2.39 -0.02 2.42 16 29 H 0.11 2.45 6.24 -2.38 -0.01 2.43 16 30 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.15 2.20 6.59 -2.91 -0.02 2.18 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 33 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.10 2.47 7.75 -2.39 -0.02 2.46 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -73.92 306.31 3.47 -70.45 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.08 Total: 7.14 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 5.08 Total: 1.10 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -4.66 Total: -92.16 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.05 Total: -33.77 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.92 3.47 -70.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913382358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.402 kcal (2) G-P(sol) polarization free energy of solvation -73.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds