Wall clock time and date at job start Mon Mar 30 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46850 * 2 1 4 4 C 1.50703 * 109.46928 * 240.00149 * 2 1 3 5 5 H 1.07998 * 119.99249 * 239.99541 * 4 2 1 6 6 C 1.37874 * 120.00434 * 60.00019 * 4 2 1 7 7 N 1.31520 * 119.99549 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47067 * 89.99871 * 8 6 4 10 10 H 1.48500 * 109.47347 * 209.99819 * 8 6 4 11 11 H 1.48504 * 109.47168 * 330.00016 * 8 6 4 12 12 C 1.50690 * 109.47190 * 119.99796 * 2 1 3 13 13 O 1.21281 * 120.00270 * 119.99675 * 12 2 1 14 14 N 1.34778 * 120.00376 * 300.00266 * 12 2 1 15 15 C 1.47579 * 134.49499 * 180.02562 * 14 12 2 16 16 C 1.53950 * 86.11695 * 155.35644 * 15 14 12 17 17 C 1.50702 * 113.74012 * 137.94992 * 16 15 14 18 18 C 1.38224 * 119.62213 * 324.06785 * 17 16 15 19 19 C 1.38627 * 119.16506 * 180.02562 * 18 17 16 20 20 C 1.38674 * 118.41684 * 359.97438 * 19 18 17 21 21 C 1.38176 * 119.16418 * 0.27899 * 20 19 18 22 22 N 1.31854 * 119.61394 * 144.08589 * 17 16 15 23 23 C 1.47582 * 134.48982 * 359.97438 * 14 12 2 24 24 H 1.09007 * 109.47259 * 300.00064 * 1 2 3 25 25 H 1.09010 * 109.47390 * 59.99949 * 1 2 3 26 26 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99858 * 180.02562 * 7 6 4 28 28 H 1.09001 * 113.77244 * 41.05900 * 15 14 12 29 29 H 1.08998 * 113.76943 * 269.65703 * 15 14 12 30 30 H 1.08996 * 113.74362 * 269.15206 * 16 15 14 31 31 H 1.08004 * 120.41707 * 359.97438 * 18 17 16 32 32 H 1.07992 * 120.79116 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.41610 * 180.02562 * 20 19 18 34 34 H 1.08003 * 119.61703 * 179.69856 * 21 20 19 35 35 H 1.09004 * 113.76954 * 90.34315 * 23 14 12 36 36 H 1.08996 * 113.77210 * 318.94633 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 6 2.0323 -0.7103 1.2304 13 8 2.7295 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 2.0093 -0.6770 3.8344 16 6 1.7566 0.7887 4.2319 17 6 0.9626 0.9443 5.5033 18 6 -0.0466 0.0452 5.7929 19 6 -0.7714 0.1976 6.9647 20 6 -0.4521 1.2531 7.8056 21 6 0.5665 2.1152 7.4473 22 7 1.2384 1.9368 6.3264 23 6 0.9051 0.8844 2.9534 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7080 1.1609 -3.4844 28 1 3.0404 -0.9996 3.9784 29 1 1.2819 -1.3758 4.2475 30 1 2.6522 1.4096 4.2116 31 1 -0.2682 -0.7652 5.1143 32 1 -1.5651 -0.4898 7.2172 33 1 -0.9956 1.4018 8.7270 34 1 0.8180 2.9425 8.0944 35 1 -0.1471 0.6448 3.1074 36 1 1.0549 1.8079 2.3941 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913382359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:54 Heat of formation + Delta-G solvation = 33.928675 kcal Electronic energy + Delta-G solvation = -18829.211660 eV Core-core repulsion = 15893.632335 eV Total energy + Delta-G solvation = -2935.579324 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80062 -39.29760 -37.07946 -33.71948 -32.72323 -31.98955 -30.54595 -28.24140 -26.05182 -25.08562 -24.27760 -23.62543 -22.09816 -20.33850 -18.45866 -17.19586 -16.59996 -16.28712 -15.83780 -15.60450 -15.22326 -14.85338 -14.35000 -13.88784 -13.61613 -13.22242 -12.78986 -12.67624 -12.49684 -12.39853 -11.91682 -11.57433 -11.32559 -11.09081 -10.95544 -10.68152 -10.57835 -10.25529 -10.04595 -9.94491 -9.60151 -9.10401 -8.95020 -8.60351 -8.32507 -8.13142 -6.01696 -4.04962 0.89069 1.09404 3.33774 3.35085 3.40778 3.49510 3.54700 3.66160 4.12368 4.47176 4.56387 4.64868 4.66434 4.84684 4.94525 5.06468 5.23710 5.32139 5.40738 5.49397 5.61647 5.62550 5.74138 5.86266 5.90914 5.99359 6.27902 6.49525 6.51574 6.69117 6.87737 6.97478 7.50858 7.77148 7.83783 8.03265 8.20198 8.45538 9.03662 9.21498 9.60395 11.05933 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.048311 B = 0.004015 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.440741 B = 6971.665638 C = 7146.443287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.036 3.964 3 H 0.052 0.948 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.544 3.456 13 O -0.542 6.542 14 N -0.652 5.652 15 C 0.111 3.889 16 C -0.081 4.081 17 C 0.146 3.854 18 C -0.168 4.168 19 C -0.073 4.073 20 C -0.181 4.181 21 C 0.100 3.900 22 N -0.480 5.480 23 C 0.124 3.876 24 H 0.014 0.986 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 2.752 19.697 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.015 3.985 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.338 3.662 13 O -0.418 6.418 14 N -0.391 5.391 15 C -0.013 4.013 16 C -0.101 4.101 17 C 0.008 3.992 18 C -0.187 4.187 19 C -0.099 4.099 20 C -0.201 4.201 21 C -0.057 4.057 22 N -0.189 5.189 23 C -0.001 4.001 24 H 0.033 0.967 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.172 0.828 35 H 0.099 0.901 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.085 2.812 19.030 19.666 hybrid contribution -0.598 -0.957 -0.435 1.210 sum -4.683 1.855 18.595 19.265 Atomic orbital electron populations 1.21761 0.96518 0.99705 1.01025 1.18825 0.94171 0.96812 0.88705 0.93010 1.21162 1.31031 1.12828 0.89002 0.90811 1.24945 0.95118 0.95054 0.99088 1.69877 1.37121 1.23081 1.23528 0.86442 0.79476 0.79230 0.82014 1.20674 1.21267 1.19718 1.21859 0.78116 0.83644 0.82631 1.90544 1.38590 1.27013 1.85626 1.50247 1.53201 1.31250 1.04417 1.23110 1.01933 0.94094 0.82173 1.22221 0.99540 0.98719 0.89581 1.21038 0.93326 0.90280 0.94547 1.22031 0.97183 1.01110 0.98409 1.21591 0.98029 0.96824 0.93409 1.22132 0.99900 0.96840 1.01257 1.22760 0.91817 0.97972 0.93154 1.67517 1.27535 1.20087 1.03735 1.23068 0.95303 0.91384 0.90306 0.96705 0.88852 0.95188 0.92963 0.90108 0.90350 0.86342 0.84430 0.84817 0.84940 0.82803 0.90116 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.85 37.16 0.33 -2.76 16 2 C 0.04 0.92 2.47 -92.93 -0.23 0.69 16 3 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.53 8.37 -34.44 -0.29 -14.82 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.54 12.99 7.38 -10.99 -0.08 12.91 16 13 O -0.54 -14.79 16.19 5.56 0.09 -14.70 16 14 N -0.65 -11.96 3.57 -178.44 -0.64 -12.59 16 15 C 0.11 1.58 8.20 -2.97 -0.02 1.56 16 16 C -0.08 -1.03 4.34 -90.86 -0.39 -1.43 16 17 C 0.15 1.72 6.21 -82.59 -0.51 1.21 16 18 C -0.17 -1.69 8.68 -39.44 -0.34 -2.03 16 19 C -0.07 -0.60 10.18 -39.28 -0.40 -1.00 16 20 C -0.18 -1.42 10.11 -39.44 -0.40 -1.82 16 21 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 22 N -0.48 -5.82 10.27 -9.47 -0.10 -5.92 16 23 C 0.12 1.78 6.35 -2.99 -0.02 1.76 16 24 H 0.01 0.28 6.13 -51.93 -0.32 -0.04 16 25 H 0.09 2.39 6.07 -51.92 -0.32 2.08 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 0.98 6.24 -51.93 -0.32 0.65 16 30 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.14 1.27 6.59 -52.48 -0.35 0.93 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.08 1.05 7.58 -51.93 -0.39 0.65 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 302.38 15.07 4.56 4.56 Total: -1.00 -33.30 302.38 -7.70 -41.00 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.57 Total: -1.14 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.65 Total: -3.45 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.11 Total: -43.30 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.09 Total: -14.70 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.30 -7.70 -41.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913382359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.926 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds