Wall clock time and date at job start Mon Mar 30 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46850 * 2 1 4 4 C 1.50703 * 109.46928 * 240.00149 * 2 1 3 5 5 H 1.07998 * 119.99249 * 239.99541 * 4 2 1 6 6 C 1.37874 * 120.00434 * 60.00019 * 4 2 1 7 7 N 1.31520 * 119.99549 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47067 * 89.99871 * 8 6 4 10 10 H 1.48500 * 109.47347 * 209.99819 * 8 6 4 11 11 H 1.48504 * 109.47168 * 330.00016 * 8 6 4 12 12 C 1.50690 * 109.47190 * 119.99796 * 2 1 3 13 13 O 1.21281 * 120.00270 * 119.99675 * 12 2 1 14 14 N 1.34778 * 120.00376 * 300.00266 * 12 2 1 15 15 C 1.47579 * 134.49499 * 180.02562 * 14 12 2 16 16 C 1.53950 * 86.11695 * 155.35644 * 15 14 12 17 17 C 1.50702 * 113.74012 * 137.94992 * 16 15 14 18 18 C 1.38224 * 119.62213 * 324.06785 * 17 16 15 19 19 C 1.38627 * 119.16506 * 180.02562 * 18 17 16 20 20 C 1.38674 * 118.41684 * 359.97438 * 19 18 17 21 21 C 1.38176 * 119.16418 * 0.27899 * 20 19 18 22 22 N 1.31854 * 119.61394 * 144.08589 * 17 16 15 23 23 C 1.47582 * 134.48982 * 359.97438 * 14 12 2 24 24 H 1.09007 * 109.47259 * 300.00064 * 1 2 3 25 25 H 1.09010 * 109.47390 * 59.99949 * 1 2 3 26 26 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99858 * 180.02562 * 7 6 4 28 28 H 1.09001 * 113.77244 * 41.05900 * 15 14 12 29 29 H 1.08998 * 113.76943 * 269.65703 * 15 14 12 30 30 H 1.08996 * 113.74362 * 269.15206 * 16 15 14 31 31 H 1.08004 * 120.41707 * 359.97438 * 18 17 16 32 32 H 1.07992 * 120.79116 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.41610 * 180.02562 * 20 19 18 34 34 H 1.08003 * 119.61703 * 179.69856 * 21 20 19 35 35 H 1.09004 * 113.76954 * 90.34315 * 23 14 12 36 36 H 1.08996 * 113.77210 * 318.94633 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 6 2.0323 -0.7103 1.2304 13 8 2.7295 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 2.0093 -0.6770 3.8344 16 6 1.7566 0.7887 4.2319 17 6 0.9626 0.9443 5.5033 18 6 -0.0466 0.0452 5.7929 19 6 -0.7714 0.1976 6.9647 20 6 -0.4521 1.2531 7.8056 21 6 0.5665 2.1152 7.4473 22 7 1.2384 1.9368 6.3264 23 6 0.9051 0.8844 2.9534 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7080 1.1609 -3.4844 28 1 3.0404 -0.9996 3.9784 29 1 1.2819 -1.3758 4.2475 30 1 2.6522 1.4096 4.2116 31 1 -0.2682 -0.7652 5.1143 32 1 -1.5651 -0.4898 7.2172 33 1 -0.9956 1.4018 8.7270 34 1 0.8180 2.9425 8.0944 35 1 -0.1471 0.6448 3.1074 36 1 1.0549 1.8079 2.3941 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913382359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:54 Heat of formation + Delta-G solvation = 12.260314 kcal Electronic energy + Delta-G solvation = -18830.151270 eV Core-core repulsion = 15893.632335 eV Total energy + Delta-G solvation = -2936.518935 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.82353 -40.53585 -38.68509 -35.79792 -33.48171 -33.13993 -32.31425 -29.53875 -27.44348 -27.01531 -25.42803 -24.41586 -23.64759 -21.52429 -19.91855 -18.39844 -18.08006 -17.70145 -17.24652 -17.01726 -16.43204 -16.10320 -15.79713 -15.14849 -14.99400 -14.50823 -14.13280 -13.97771 -13.80187 -13.70966 -13.33545 -12.97490 -12.85450 -12.69263 -12.60296 -12.41246 -12.23500 -12.10426 -12.00139 -11.06003 -10.75554 -10.62543 -10.38857 -10.27284 -9.84944 -9.63955 -8.16797 -6.27982 0.17273 0.41973 1.40151 1.40241 1.52590 1.82353 1.95736 2.43886 2.78133 3.12136 3.25101 3.55852 3.76155 3.89805 4.05475 4.10791 4.19252 4.31671 4.34228 4.47117 4.53503 4.62298 4.72205 4.75710 4.86239 4.90552 4.95000 5.08190 5.13280 5.33463 5.34023 5.48169 5.70769 5.83579 5.93979 6.20303 6.70643 6.83202 7.10474 7.36984 7.44558 8.89198 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.048311 B = 0.004015 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.440741 B = 6971.665638 C = 7146.443287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.031 3.969 3 H 0.036 0.964 4 C -0.533 4.533 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.541 3.459 13 O -0.590 6.590 14 N -0.655 5.655 15 C 0.110 3.890 16 C -0.059 4.059 17 C 0.126 3.874 18 C -0.174 4.174 19 C -0.073 4.073 20 C -0.171 4.171 21 C 0.087 3.913 22 N -0.511 5.511 23 C 0.120 3.880 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.266 0.734 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.104 0.896 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 3.051 21.658 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.010 3.990 3 H 0.054 0.946 4 C -0.571 4.571 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.334 3.666 13 O -0.470 6.470 14 N -0.391 5.391 15 C -0.012 4.012 16 C -0.079 4.079 17 C -0.011 4.011 18 C -0.193 4.193 19 C -0.099 4.099 20 C -0.190 4.190 21 C -0.070 4.070 22 N -0.220 5.220 23 C -0.003 4.003 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.183 0.817 34 H 0.194 0.806 35 H 0.122 0.878 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.735 3.156 21.040 22.035 hybrid contribution -0.144 -0.968 -0.868 1.309 sum -5.879 2.188 20.172 21.124 Atomic orbital electron populations 1.21550 0.94871 0.99305 1.01703 1.18732 0.95484 0.95621 0.89141 0.94615 1.21295 1.31843 1.12828 0.91171 0.93448 1.25611 0.95110 0.95717 1.01430 1.69954 1.37104 1.23507 1.24402 0.85563 0.78648 0.78564 0.78925 1.19770 1.19777 1.20425 1.21364 0.78077 0.83089 0.84058 1.90503 1.40819 1.28960 1.86741 1.50136 1.52602 1.31978 1.04338 1.23407 1.02527 0.95967 0.79335 1.21858 0.99056 0.97040 0.89933 1.20759 0.94408 0.91624 0.94326 1.22144 0.96937 1.00861 0.99405 1.21984 0.98133 0.97262 0.92528 1.22521 0.98865 0.95607 1.02004 1.23239 0.92057 0.99067 0.92617 1.67423 1.28892 1.20712 1.04976 1.23375 0.96398 0.89853 0.90680 0.93026 0.91012 0.95952 0.92498 0.90617 0.87782 0.87082 0.83817 0.82007 0.81676 0.80603 0.87808 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.85 71.98 0.64 -4.83 16 2 C 0.03 1.65 2.47 -12.29 -0.03 1.62 16 3 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.53 -31.92 8.37 25.60 0.21 -31.71 16 5 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -51.95 11.32 21.45 0.24 -51.71 16 8 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 12 C 0.54 26.55 7.38 87.65 0.65 27.19 16 13 O -0.59 -33.47 16.19 -3.03 -0.05 -33.52 16 14 N -0.65 -23.91 3.57 -836.86 -2.98 -26.89 16 15 C 0.11 3.05 8.20 86.48 0.71 3.76 16 16 C -0.06 -1.45 4.34 -10.89 -0.05 -1.50 16 17 C 0.13 2.75 6.21 42.55 0.26 3.01 16 18 C -0.17 -3.01 8.68 22.36 0.19 -2.81 16 19 C -0.07 -0.94 10.18 22.47 0.23 -0.71 16 20 C -0.17 -2.01 10.11 22.36 0.23 -1.78 16 21 C 0.09 1.39 11.18 84.67 0.95 2.33 16 22 N -0.51 -11.51 10.27 -183.88 -1.89 -13.40 16 23 C 0.12 3.30 6.35 86.47 0.55 3.85 16 24 H 0.05 1.97 6.13 -2.38 -0.01 1.96 16 25 H 0.07 3.70 6.07 -2.38 -0.01 3.68 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.10 2.39 6.24 -2.39 -0.01 2.38 16 30 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.14 2.22 6.59 -2.91 -0.02 2.21 16 32 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 33 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 34 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.10 2.43 7.58 -2.39 -0.02 2.41 16 36 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -74.18 302.38 3.41 -70.76 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.08 Total: 6.99 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.99 Total: 0.05 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -4.63 Total: -92.00 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.05 Total: -33.52 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.18 3.41 -70.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913382359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.025 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds