Wall clock time and date at job start Mon Mar 30 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38597 * 120.31341 * 2 1 4 4 N 1.31506 * 120.90593 * 179.76784 * 3 2 1 5 5 C 1.32811 * 121.63304 * 0.52587 * 4 3 2 6 6 C 1.47999 * 119.73247 * 179.75243 * 5 4 3 7 7 O 1.21568 * 119.99918 * 174.23235 * 6 5 4 8 8 N 1.34776 * 119.99999 * 354.23456 * 6 5 4 9 9 C 1.36779 * 119.99932 * 174.05730 * 8 6 5 10 10 H 1.08001 * 120.00590 * 225.15483 * 9 8 6 11 11 C 1.39113 * 120.00036 * 45.16128 * 9 8 6 12 12 N 1.31316 * 119.99891 * 17.43952 * 11 9 8 13 13 Si 1.86800 * 120.00214 * 197.44467 * 11 9 8 14 14 H 1.48510 * 109.47065 * 269.99861 * 13 11 9 15 15 H 1.48501 * 109.47181 * 29.99683 * 13 11 9 16 16 H 1.48500 * 109.47458 * 149.99786 * 13 11 9 17 17 C 1.46497 * 119.99870 * 354.06437 * 8 6 5 18 18 C 1.53002 * 117.49653 * 184.03943 * 17 8 6 19 19 C 1.52997 * 117.50176 * 115.41762 * 17 8 6 20 20 C 1.39378 * 120.53493 * 359.47783 * 5 4 3 21 21 C 1.38580 * 119.05937 * 0.25574 * 20 5 4 22 22 C 1.50697 * 120.75349 * 180.02562 * 21 20 5 23 23 H 1.08996 * 109.47088 * 269.96931 * 1 2 3 24 24 H 1.08992 * 109.47354 * 29.97750 * 1 2 3 25 25 H 1.09001 * 109.46873 * 149.97951 * 1 2 3 26 26 H 1.07995 * 119.54387 * 0.02562 * 3 2 1 27 27 H 0.97000 * 120.00174 * 174.96688 * 12 11 9 28 28 H 1.09001 * 115.55025 * 329.74365 * 17 8 6 29 29 H 1.08995 * 117.50237 * 359.97438 * 18 17 8 30 30 H 1.08996 * 117.50205 * 145.01800 * 18 17 8 31 31 H 1.08998 * 117.49663 * 214.97974 * 19 17 8 32 32 H 1.09000 * 117.49564 * 359.96990 * 19 17 8 33 33 H 1.08000 * 120.46778 * 180.27341 * 20 5 4 34 34 H 1.09003 * 109.47190 * 90.00083 * 22 21 20 35 35 H 1.09003 * 109.47040 * 209.99468 * 22 21 20 36 36 H 1.09002 * 109.46953 * 329.99760 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1965 0.0000 4 7 3.5215 1.2101 0.0046 5 6 4.2298 0.0866 -0.0010 6 6 5.7083 0.1510 -0.0011 7 8 6.3612 -0.8695 0.0996 8 7 6.3310 1.3411 -0.1128 9 6 7.6914 1.4152 0.0090 10 1 8.1381 2.1909 0.6133 11 6 8.4997 0.4916 -0.6458 12 7 8.0124 -0.2236 -1.6334 13 14 10.2782 0.2685 -0.1200 14 1 11.1426 1.1984 -0.8907 15 1 10.4061 0.5611 1.3302 16 1 10.7001 -1.1310 -0.3817 17 6 5.5508 2.5552 -0.3643 18 6 6.3222 3.8596 -0.5751 19 6 5.5469 3.6307 0.7239 20 6 3.5919 -1.1526 -0.0011 21 6 2.2068 -1.1967 -0.0006 22 6 1.4777 -2.5156 -0.0001 23 1 -0.3633 -0.0006 1.0276 24 1 -0.3633 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6642 2.1304 0.0004 27 1 8.5938 -0.8142 -2.1375 28 1 4.6336 2.4145 -0.9362 29 1 7.4101 3.8145 -0.5262 30 1 5.9127 4.5773 -1.2858 31 1 4.6272 4.1977 0.8677 32 1 6.1245 3.4346 1.6272 33 1 4.1689 -2.0656 -0.0012 34 1 1.3023 -2.8334 1.0277 35 1 0.5228 -2.4031 -0.5136 36 1 2.0807 -3.2642 -0.5140 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:06 Heat of formation + Delta-G solvation = 48.815068 kcal Electronic energy + Delta-G solvation = -19601.950403 eV Core-core repulsion = 16667.016601 eV Total energy + Delta-G solvation = -2934.933802 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07949 -38.08738 -35.88899 -34.21234 -32.84633 -31.87790 -30.81984 -28.09439 -27.08651 -24.89569 -22.34383 -22.29914 -21.43927 -20.63313 -19.44841 -17.05935 -16.20966 -15.90716 -15.01132 -14.65568 -14.54720 -14.35577 -13.95305 -13.63221 -13.21801 -12.88156 -12.84617 -12.70833 -12.34507 -12.09928 -11.92577 -11.70297 -11.27510 -10.97260 -10.84725 -10.76997 -10.59503 -10.20012 -9.79120 -9.68407 -9.07172 -8.80851 -8.64031 -8.38186 -7.96248 -6.95898 -6.11258 -3.85677 1.30863 1.66877 3.29702 3.38708 3.41619 3.81227 4.24984 4.63548 4.77796 4.84667 4.90958 5.06750 5.11320 5.18268 5.22223 5.39438 5.49551 5.64246 5.70326 5.80375 5.83107 5.88235 5.97043 6.05707 6.18627 6.24180 6.26413 6.44997 6.51851 6.63666 6.70936 7.00557 7.09977 7.27752 7.60062 8.25607 8.39955 9.03796 9.17483 9.64089 10.30399 10.95194 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.006903 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.619089 B = 4055.254075 C = 4976.620209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.152 4.152 3 C 0.091 3.909 4 N -0.457 5.457 5 C 0.112 3.888 6 C 0.509 3.491 7 O -0.529 6.529 8 N -0.398 5.398 9 C -0.343 4.343 10 H 0.082 0.918 11 C 0.069 3.931 12 N -0.817 5.817 13 Si 0.915 3.085 14 H -0.281 1.281 15 H -0.270 1.270 16 H -0.283 1.283 17 C 0.097 3.903 18 C -0.192 4.192 19 C -0.197 4.197 20 C -0.126 4.126 21 C -0.056 4.056 22 C -0.114 4.114 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.150 0.850 27 H 0.266 0.734 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.423 1.448 1.746 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.155 4.155 3 C -0.068 4.068 4 N -0.169 5.169 5 C -0.026 4.026 6 C 0.296 3.704 7 O -0.407 6.407 8 N -0.116 5.116 9 C -0.470 4.470 10 H 0.100 0.900 11 C -0.142 4.142 12 N -0.450 5.450 13 Si 0.741 3.259 14 H -0.207 1.207 15 H -0.195 1.195 16 H -0.209 1.209 17 C -0.009 4.009 18 C -0.229 4.229 19 C -0.236 4.236 20 C -0.147 4.147 21 C -0.063 4.063 22 C -0.170 4.170 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.167 0.833 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.547 1.487 1.698 12.748 hybrid contribution 0.377 -0.766 0.126 0.863 sum -12.170 0.721 1.824 12.327 Atomic orbital electron populations 1.20699 0.90933 1.02628 1.02047 1.20771 0.96899 0.93898 1.03925 1.22721 0.90459 0.96910 0.96704 1.68205 1.07135 1.30045 1.11490 1.22030 0.96469 0.88552 0.95508 1.17433 0.83671 0.85034 0.84277 1.90626 1.64650 1.33317 1.52122 1.42607 1.05357 1.03517 1.60116 1.18993 0.79932 1.17232 1.30849 0.89996 1.25337 0.99149 0.95825 0.93939 1.69823 1.36002 1.23138 1.16058 0.86168 0.82805 0.77576 0.79315 1.20692 1.19488 1.20851 1.22189 0.96268 0.82291 1.00164 1.23182 1.00335 1.00317 0.99112 1.23103 1.01304 1.05399 0.93786 1.21965 0.93559 0.99621 0.99526 1.20071 0.93455 0.95272 0.97540 1.20816 1.00064 0.93659 1.02488 0.91395 0.91601 0.91462 0.83272 0.92423 0.85115 0.88009 0.90091 0.90056 0.89825 0.84183 0.90891 0.91111 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.65 36.01 0.35 -0.67 16 2 C -0.15 -2.14 5.91 -104.35 -0.62 -2.75 16 3 C 0.09 1.42 10.86 -17.56 -0.19 1.23 16 4 N -0.46 -9.01 6.17 -9.81 -0.06 -9.07 16 5 C 0.11 2.53 6.63 -83.02 -0.55 1.98 16 6 C 0.51 13.92 7.06 -12.26 -0.09 13.84 16 7 O -0.53 -16.16 13.82 5.31 0.07 -16.09 16 8 N -0.40 -10.68 2.82 -108.75 -0.31 -10.99 16 9 C -0.34 -9.65 7.89 -15.02 -0.12 -9.77 16 10 H 0.08 2.22 7.33 -52.49 -0.38 1.83 16 11 C 0.07 1.98 4.42 -17.45 -0.08 1.91 16 12 N -0.82 -24.63 11.55 55.50 0.64 -23.99 16 13 Si 0.91 22.01 29.59 -169.99 -5.03 16.98 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.10 2.16 4.91 -67.93 -0.33 1.83 16 18 C -0.19 -3.81 9.80 -26.73 -0.26 -4.07 16 19 C -0.20 -3.80 10.34 -26.73 -0.28 -4.07 16 20 C -0.13 -2.47 9.34 -39.03 -0.36 -2.83 16 21 C -0.06 -0.86 5.91 -104.35 -0.62 -1.48 16 22 C -0.11 -1.29 9.67 36.00 0.35 -0.94 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.07 0.57 6.06 -51.93 -0.31 0.26 16 26 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.13 2.86 5.72 -51.93 -0.30 2.56 16 29 H 0.10 2.17 6.76 -51.93 -0.35 1.82 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.14 2.82 7.65 -52.49 -0.40 2.42 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.66 6.07 -51.93 -0.32 0.34 16 36 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -33.43 300.54 -7.53 -40.96 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.58 Total: 3.47 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -2.80 Total: -5.80 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.27 Total: -44.05 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.07 Total: -16.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.43 -7.53 -40.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.773 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds