Wall clock time and date at job start Mon Mar 30 2020 04:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38597 * 120.31341 * 2 1 4 4 N 1.31506 * 120.90593 * 179.76784 * 3 2 1 5 5 C 1.32811 * 121.63304 * 0.52587 * 4 3 2 6 6 C 1.47999 * 119.73247 * 179.75243 * 5 4 3 7 7 O 1.21568 * 119.99918 * 174.23235 * 6 5 4 8 8 N 1.34776 * 119.99999 * 354.23456 * 6 5 4 9 9 C 1.36779 * 119.99932 * 174.05730 * 8 6 5 10 10 H 1.08001 * 120.00590 * 225.15483 * 9 8 6 11 11 C 1.39113 * 120.00036 * 45.16128 * 9 8 6 12 12 N 1.31316 * 119.99891 * 17.43952 * 11 9 8 13 13 Si 1.86800 * 120.00214 * 197.44467 * 11 9 8 14 14 H 1.48510 * 109.47065 * 269.99861 * 13 11 9 15 15 H 1.48501 * 109.47181 * 29.99683 * 13 11 9 16 16 H 1.48500 * 109.47458 * 149.99786 * 13 11 9 17 17 C 1.46497 * 119.99870 * 354.06437 * 8 6 5 18 18 C 1.53002 * 117.49653 * 184.03943 * 17 8 6 19 19 C 1.52997 * 117.50176 * 115.41762 * 17 8 6 20 20 C 1.39378 * 120.53493 * 359.47783 * 5 4 3 21 21 C 1.38580 * 119.05937 * 0.25574 * 20 5 4 22 22 C 1.50697 * 120.75349 * 180.02562 * 21 20 5 23 23 H 1.08996 * 109.47088 * 269.96931 * 1 2 3 24 24 H 1.08992 * 109.47354 * 29.97750 * 1 2 3 25 25 H 1.09001 * 109.46873 * 149.97951 * 1 2 3 26 26 H 1.07995 * 119.54387 * 0.02562 * 3 2 1 27 27 H 0.97000 * 120.00174 * 174.96688 * 12 11 9 28 28 H 1.09001 * 115.55025 * 329.74365 * 17 8 6 29 29 H 1.08995 * 117.50237 * 359.97438 * 18 17 8 30 30 H 1.08996 * 117.50205 * 145.01800 * 18 17 8 31 31 H 1.08998 * 117.49663 * 214.97974 * 19 17 8 32 32 H 1.09000 * 117.49564 * 359.96990 * 19 17 8 33 33 H 1.08000 * 120.46778 * 180.27341 * 20 5 4 34 34 H 1.09003 * 109.47190 * 90.00083 * 22 21 20 35 35 H 1.09003 * 109.47040 * 209.99468 * 22 21 20 36 36 H 1.09002 * 109.46953 * 329.99760 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1965 0.0000 4 7 3.5215 1.2101 0.0046 5 6 4.2298 0.0866 -0.0010 6 6 5.7083 0.1510 -0.0011 7 8 6.3612 -0.8695 0.0996 8 7 6.3310 1.3411 -0.1128 9 6 7.6914 1.4152 0.0090 10 1 8.1381 2.1909 0.6133 11 6 8.4997 0.4916 -0.6458 12 7 8.0124 -0.2236 -1.6334 13 14 10.2782 0.2685 -0.1200 14 1 11.1426 1.1984 -0.8907 15 1 10.4061 0.5611 1.3302 16 1 10.7001 -1.1310 -0.3817 17 6 5.5508 2.5552 -0.3643 18 6 6.3222 3.8596 -0.5751 19 6 5.5469 3.6307 0.7239 20 6 3.5919 -1.1526 -0.0011 21 6 2.2068 -1.1967 -0.0006 22 6 1.4777 -2.5156 -0.0001 23 1 -0.3633 -0.0006 1.0276 24 1 -0.3633 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6642 2.1304 0.0004 27 1 8.5938 -0.8142 -2.1375 28 1 4.6336 2.4145 -0.9362 29 1 7.4101 3.8145 -0.5262 30 1 5.9127 4.5773 -1.2858 31 1 4.6272 4.1977 0.8677 32 1 6.1245 3.4346 1.6272 33 1 4.1689 -2.0656 -0.0012 34 1 1.3023 -2.8334 1.0277 35 1 0.5228 -2.4031 -0.5136 36 1 2.0807 -3.2642 -0.5140 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:05 Heat of formation + Delta-G solvation = 27.734430 kcal Electronic energy + Delta-G solvation = -19602.864528 eV Core-core repulsion = 16667.016601 eV Total energy + Delta-G solvation = -2935.847927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54368 -39.86679 -37.74177 -35.48534 -34.82774 -33.20126 -32.77828 -29.30038 -28.40925 -26.69816 -23.92674 -23.60134 -23.00852 -22.33218 -21.21506 -18.81409 -17.78265 -17.64850 -16.71569 -16.32240 -15.98044 -15.78753 -15.62446 -15.21212 -14.79238 -14.53382 -13.93843 -13.77405 -13.63891 -13.49452 -13.40225 -12.98609 -12.85439 -12.70532 -12.56079 -12.33548 -12.22247 -12.10886 -11.59838 -11.24813 -10.81342 -10.48284 -10.32752 -9.79135 -9.68514 -8.98413 -8.22738 -6.04009 -0.11116 0.35740 1.34597 1.42257 1.50267 2.19467 2.32506 2.91816 3.09700 3.12443 3.40228 3.57729 3.84362 3.87691 4.01253 4.08340 4.26976 4.43342 4.47328 4.57049 4.67512 4.70958 4.77953 4.86889 4.91811 4.95709 5.08698 5.13525 5.18976 5.28135 5.42650 5.45393 5.48076 5.52370 5.88040 6.16702 6.90730 6.97174 7.20252 7.61102 8.28019 8.84183 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.006903 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.619089 B = 4055.254075 C = 4976.620209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C 0.086 3.914 4 N -0.468 5.468 5 C 0.071 3.929 6 C 0.494 3.506 7 O -0.583 6.583 8 N -0.416 5.416 9 C -0.362 4.362 10 H 0.083 0.917 11 C 0.018 3.982 12 N -0.862 5.862 13 Si 0.979 3.021 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.290 1.290 17 C 0.067 3.933 18 C -0.184 4.184 19 C -0.170 4.170 20 C -0.142 4.142 21 C -0.055 4.055 22 C -0.112 4.112 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.193 0.807 27 H 0.262 0.738 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.965 2.828 2.182 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.130 4.130 3 C -0.074 4.074 4 N -0.180 5.180 5 C -0.065 4.065 6 C 0.283 3.717 7 O -0.465 6.465 8 N -0.133 5.133 9 C -0.490 4.490 10 H 0.100 0.900 11 C -0.189 4.189 12 N -0.497 5.497 13 Si 0.803 3.197 14 H -0.184 1.184 15 H -0.191 1.191 16 H -0.216 1.216 17 C -0.038 4.038 18 C -0.222 4.222 19 C -0.209 4.209 20 C -0.163 4.163 21 C -0.063 4.063 22 C -0.168 4.168 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.209 0.791 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.095 2.916 2.136 16.496 hybrid contribution 1.174 -1.160 0.037 1.651 sum -14.920 1.756 2.173 15.180 Atomic orbital electron populations 1.20863 0.86689 1.04702 1.03890 1.21371 0.99659 0.92468 0.99478 1.23502 0.89093 0.99469 0.95366 1.68028 1.09205 1.28925 1.11881 1.21356 0.94174 0.90625 1.00307 1.18266 0.86054 0.84548 0.82801 1.90547 1.66708 1.34959 1.54243 1.42831 1.05360 1.04919 1.60215 1.19237 0.81274 1.17492 1.30983 0.89953 1.26248 1.03495 0.95439 0.93749 1.69954 1.37394 1.24585 1.17751 0.85190 0.78096 0.77324 0.79137 1.18376 1.19112 1.21550 1.22361 0.96784 0.81607 1.03010 1.23236 0.99228 0.99340 1.00366 1.23085 1.02176 1.03219 0.92414 1.21942 0.95755 0.97816 1.00811 1.20518 0.91617 0.98129 0.96037 1.20928 1.00756 0.91134 1.03963 0.89322 0.89376 0.89685 0.79064 0.92889 0.84621 0.90121 0.86767 0.86419 0.91444 0.86470 0.89185 0.87937 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.65 71.24 0.69 -0.67 16 2 C -0.13 -3.07 5.91 -19.69 -0.12 -3.18 16 3 C 0.09 2.38 10.86 84.83 0.92 3.30 16 4 N -0.47 -18.17 6.17 -184.94 -1.14 -19.31 16 5 C 0.07 3.35 6.63 41.86 0.28 3.62 16 6 C 0.49 28.81 7.06 86.83 0.61 29.42 16 7 O -0.58 -38.39 13.82 -3.93 -0.05 -38.45 16 8 N -0.42 -23.39 2.82 -616.24 -1.74 -25.13 16 9 C -0.36 -21.41 7.89 84.13 0.66 -20.74 16 10 H 0.08 4.67 7.33 -2.91 -0.02 4.65 16 11 C 0.02 1.07 4.42 84.98 0.38 1.44 16 12 N -0.86 -55.16 11.55 21.69 0.25 -54.91 16 13 Si 0.98 47.22 29.59 68.60 2.03 49.25 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 17 C 0.07 3.03 4.91 44.99 0.22 3.25 16 18 C -0.18 -7.18 9.80 30.59 0.30 -6.88 16 19 C -0.17 -6.35 10.34 30.59 0.32 -6.04 16 20 C -0.14 -5.77 9.34 22.63 0.21 -5.56 16 21 C -0.06 -1.60 5.91 -19.69 -0.12 -1.71 16 22 C -0.11 -2.18 9.67 71.24 0.69 -1.50 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 25 H 0.08 0.88 6.06 -2.39 -0.01 0.87 16 26 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 27 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 28 H 0.14 5.94 5.72 -2.39 -0.01 5.92 16 29 H 0.08 3.50 6.76 -2.39 -0.02 3.48 16 30 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.12 5.16 7.65 -2.91 -0.02 5.13 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 1.37 6.07 -2.39 -0.01 1.36 16 36 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -80.64 300.54 5.48 -75.17 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.09 Total: 18.63 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.04 Total: -5.25 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -2.63 Total: -99.35 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.05 Total: -38.45 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -80.64 5.48 -75.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.901 kcal (2) G-P(sol) polarization free energy of solvation -80.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds