Wall clock time and date at job start Mon Mar 30 2020 04:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38109 * 120.03723 * 2 1 4 4 C 1.38284 * 120.06966 * 179.97438 * 3 2 1 5 5 C 1.38276 * 120.15431 * 0.27178 * 4 3 2 6 6 C 1.38104 * 120.07691 * 359.45194 * 5 4 3 7 7 C 1.50697 * 120.04124 * 180.27251 * 6 5 4 8 8 C 1.38908 * 120.03871 * 179.97438 * 2 1 3 9 9 N 1.39673 * 120.07389 * 359.97438 * 8 2 1 10 10 C 1.46900 * 111.00580 * 251.52795 * 9 8 2 11 11 C 1.53240 * 109.34373 * 172.74408 * 10 9 8 12 12 N 1.47078 * 108.51964 * 53.83408 * 11 10 9 13 13 C 1.36937 * 120.88578 * 128.83554 * 12 11 10 14 14 H 1.07997 * 120.00144 * 207.52257 * 13 12 11 15 15 C 1.38814 * 119.99476 * 27.52602 * 13 12 11 16 16 N 1.31612 * 120.00141 * 15.98634 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 195.99404 * 15 13 12 18 18 H 1.48504 * 109.47615 * 89.99618 * 17 15 13 19 19 H 1.48500 * 109.47129 * 209.99733 * 17 15 13 20 20 H 1.48504 * 109.47044 * 329.99763 * 17 15 13 21 21 C 1.47088 * 118.23747 * 308.81455 * 12 11 10 22 22 C 1.46899 * 111.00258 * 127.22413 * 9 8 2 23 23 H 1.09004 * 109.46510 * 90.00098 * 1 2 3 24 24 H 1.08995 * 109.47036 * 209.99729 * 1 2 3 25 25 H 1.08997 * 109.47065 * 330.00677 * 1 2 3 26 26 H 1.07991 * 119.96046 * 359.97438 * 3 2 1 27 27 H 1.08004 * 119.91874 * 180.02562 * 4 3 2 28 28 H 1.08006 * 119.96757 * 179.70222 * 5 4 3 29 29 H 1.09004 * 109.46976 * 269.65222 * 7 6 5 30 30 H 1.08999 * 109.47340 * 29.65832 * 7 6 5 31 31 H 1.09008 * 109.47054 * 149.65705 * 7 6 5 32 32 H 1.09001 * 109.49330 * 292.71035 * 10 9 8 33 33 H 1.09001 * 109.48668 * 52.78705 * 10 9 8 34 34 H 1.08994 * 109.62511 * 294.12087 * 11 10 9 35 35 H 1.08996 * 109.62737 * 173.53968 * 11 10 9 36 36 H 0.97007 * 120.00083 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.62573 * 291.47974 * 21 12 11 38 38 H 1.08996 * 109.63143 * 170.89718 * 21 12 11 39 39 H 1.09004 * 109.49136 * 307.21745 * 22 9 8 40 40 H 1.09003 * 109.49279 * 67.29362 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1964 0.0005 5 6 4.2765 0.0012 -0.0046 6 6 3.5915 -1.1980 0.0011 7 6 4.3501 -2.5001 0.0018 8 6 2.2024 -1.2025 0.0005 9 7 1.5064 -2.4135 0.0016 10 6 1.6212 -3.0857 1.3027 11 6 0.7021 -4.3117 1.3236 12 7 1.0186 -5.1526 0.1592 13 6 1.2696 -6.4908 0.3059 14 1 1.9060 -7.0016 -0.4014 15 6 0.7057 -7.1906 1.3639 16 7 -0.3006 -6.6714 2.0345 17 14 1.3756 -8.8693 1.8357 18 1 2.4545 -8.7066 2.8431 19 1 0.2828 -9.6948 2.4099 20 1 1.9220 -9.5412 0.6294 21 6 1.0579 -4.5183 -1.1673 22 6 1.9629 -3.2841 -1.0900 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6584 2.1308 -0.0004 27 1 4.1194 2.1328 0.0010 28 1 5.3565 0.0053 -0.0090 29 1 4.5238 -2.8199 -1.0258 30 1 5.3065 -2.3633 0.5063 31 1 3.7686 -3.2592 0.5251 32 1 2.6527 -3.4016 1.4592 33 1 1.3272 -2.3971 2.0949 34 1 -0.3381 -3.9903 1.2714 35 1 0.8678 -4.8779 2.2400 36 1 -0.6944 -7.1603 2.7741 37 1 0.0518 -4.2168 -1.4589 38 1 1.4587 -5.2211 -1.8976 39 1 1.9167 -2.7395 -2.0331 40 1 2.9896 -3.5973 -0.9003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034197399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:41 Heat of formation + Delta-G solvation = 71.484130 kcal Electronic energy + Delta-G solvation = -20237.776290 eV Core-core repulsion = 17439.658587 eV Total energy + Delta-G solvation = -2798.117703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25768 -37.36606 -34.43055 -33.34837 -31.57204 -30.26247 -29.67824 -27.76776 -26.45686 -25.50391 -22.83495 -22.56459 -20.99128 -20.49881 -19.20347 -17.08032 -16.13859 -15.48725 -15.06609 -14.70350 -14.40810 -14.01303 -13.83933 -13.50042 -13.19288 -13.02199 -12.81878 -12.72003 -12.67594 -12.10023 -11.48522 -11.41346 -11.34748 -11.23687 -11.04501 -10.76298 -10.68072 -10.52558 -10.24035 -10.10667 -9.76825 -9.61822 -8.52582 -8.38425 -8.31147 -7.73338 -6.64760 -5.77938 -3.20395 1.50553 1.55651 3.37645 3.44644 3.45773 3.87241 4.35557 4.50756 4.99714 5.00927 5.11727 5.37407 5.39208 5.44646 5.58137 5.62672 5.74280 5.77319 5.86771 5.93386 5.96159 5.98849 6.10546 6.14218 6.19199 6.31348 6.41891 6.52941 6.60311 6.63501 6.67283 6.71630 6.88095 6.95436 7.10446 7.25236 7.62518 7.68577 7.80225 7.95989 8.43940 9.21504 9.84477 10.43650 11.30807 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.005587 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.818097 B = 5010.477778 C = 5341.719788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.064 4.064 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.133 4.133 8 C 0.100 3.900 9 N -0.495 5.495 10 C 0.033 3.967 11 C 0.180 3.820 12 N -0.594 5.594 13 C -0.252 4.252 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.149 3.851 22 C 0.026 3.974 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.024 0.976 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.304 13.535 -3.529 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.113 4.113 7 C -0.189 4.189 8 C 0.006 3.994 9 N -0.216 5.216 10 C -0.094 4.094 11 C 0.054 3.946 12 N -0.317 5.317 13 C -0.382 4.382 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.023 3.977 22 C -0.102 4.102 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.685 13.488 -3.472 15.043 hybrid contribution 1.201 -0.876 0.387 1.536 sum 6.886 12.612 -3.085 14.697 Atomic orbital electron populations 1.20627 0.90704 1.02590 1.02112 1.19844 0.96502 0.91395 0.98768 1.20914 0.94099 0.97173 1.02337 1.20996 0.94290 0.97546 1.01702 1.20865 0.99248 0.91985 1.02109 1.20617 0.94349 0.95596 1.00718 1.21379 0.99830 0.95251 1.02465 1.18813 0.89481 0.91875 0.99276 1.59598 1.54522 1.02318 1.05186 1.23084 1.00347 0.97620 0.88303 1.20864 0.94145 0.87241 0.92392 1.44101 1.82202 1.05178 1.00260 1.19200 1.22832 0.84597 1.11537 0.91643 1.25043 0.96067 0.97757 1.00738 1.70016 1.22793 1.38744 1.23238 0.86292 0.78068 0.83948 0.78462 1.21510 1.21751 1.20472 1.20982 0.96173 0.91462 0.89105 1.23114 0.99765 0.94873 0.92445 0.91639 0.90015 0.92762 0.86354 0.86621 0.86742 0.91025 0.92206 0.89080 0.94276 0.92157 0.95521 0.89295 0.93615 0.95811 0.92571 0.92308 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.77 36.01 0.35 -1.07 16 2 C -0.06 -0.96 5.90 -104.42 -0.62 -1.57 16 3 C -0.13 -1.63 9.70 -39.61 -0.38 -2.02 16 4 C -0.13 -1.57 10.04 -39.55 -0.40 -1.96 16 5 C -0.12 -1.64 9.69 -39.62 -0.38 -2.03 16 6 C -0.11 -1.69 5.64 -104.42 -0.59 -2.28 16 7 C -0.13 -1.96 7.89 36.00 0.28 -1.67 16 8 C 0.10 1.65 4.65 -83.79 -0.39 1.26 16 9 N -0.49 -9.04 3.53 -170.82 -0.60 -9.64 16 10 C 0.03 0.66 5.29 -3.70 -0.02 0.64 16 11 C 0.18 4.31 5.40 -3.60 -0.02 4.29 16 12 N -0.59 -14.85 3.03 -172.01 -0.52 -15.37 16 13 C -0.25 -6.86 9.63 -15.06 -0.14 -7.00 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 16 N -0.90 -26.11 11.16 55.49 0.62 -25.49 16 17 Si 0.90 21.57 29.58 -169.99 -5.03 16.55 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.15 3.18 6.69 -3.60 -0.02 3.16 16 22 C 0.03 0.47 4.94 -3.70 -0.02 0.45 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.29 7.46 -51.93 -0.39 0.90 16 25 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 28 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 29 H 0.07 1.00 7.23 -51.93 -0.38 0.63 16 30 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.09 1.56 3.47 -51.92 -0.18 1.38 16 32 H 0.04 0.79 5.16 -51.93 -0.27 0.52 16 33 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 2.36 6.16 -51.93 -0.32 2.04 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 1.15 7.95 -51.93 -0.41 0.73 16 39 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.06 1.02 3.81 -51.93 -0.20 0.82 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -29.01 307.18 -9.25 -38.25 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.91 Total: 0.89 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.44 Total: -9.82 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.51 Total: -50.50 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.01 -9.25 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034197399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.737 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds