Wall clock time and date at job start Mon Mar 30 2020 04:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38109 * 120.03723 * 2 1 4 4 C 1.38284 * 120.06966 * 179.97438 * 3 2 1 5 5 C 1.38276 * 120.15431 * 0.27178 * 4 3 2 6 6 C 1.38104 * 120.07691 * 359.45194 * 5 4 3 7 7 C 1.50697 * 120.04124 * 180.27251 * 6 5 4 8 8 C 1.38908 * 120.03871 * 179.97438 * 2 1 3 9 9 N 1.39673 * 120.07389 * 359.97438 * 8 2 1 10 10 C 1.46900 * 111.00580 * 251.52795 * 9 8 2 11 11 C 1.53240 * 109.34373 * 172.74408 * 10 9 8 12 12 N 1.47078 * 108.51964 * 53.83408 * 11 10 9 13 13 C 1.36937 * 120.88578 * 128.83554 * 12 11 10 14 14 H 1.07997 * 120.00144 * 207.52257 * 13 12 11 15 15 C 1.38814 * 119.99476 * 27.52602 * 13 12 11 16 16 N 1.31612 * 120.00141 * 15.98634 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 195.99404 * 15 13 12 18 18 H 1.48504 * 109.47615 * 89.99618 * 17 15 13 19 19 H 1.48500 * 109.47129 * 209.99733 * 17 15 13 20 20 H 1.48504 * 109.47044 * 329.99763 * 17 15 13 21 21 C 1.47088 * 118.23747 * 308.81455 * 12 11 10 22 22 C 1.46899 * 111.00258 * 127.22413 * 9 8 2 23 23 H 1.09004 * 109.46510 * 90.00098 * 1 2 3 24 24 H 1.08995 * 109.47036 * 209.99729 * 1 2 3 25 25 H 1.08997 * 109.47065 * 330.00677 * 1 2 3 26 26 H 1.07991 * 119.96046 * 359.97438 * 3 2 1 27 27 H 1.08004 * 119.91874 * 180.02562 * 4 3 2 28 28 H 1.08006 * 119.96757 * 179.70222 * 5 4 3 29 29 H 1.09004 * 109.46976 * 269.65222 * 7 6 5 30 30 H 1.08999 * 109.47340 * 29.65832 * 7 6 5 31 31 H 1.09008 * 109.47054 * 149.65705 * 7 6 5 32 32 H 1.09001 * 109.49330 * 292.71035 * 10 9 8 33 33 H 1.09001 * 109.48668 * 52.78705 * 10 9 8 34 34 H 1.08994 * 109.62511 * 294.12087 * 11 10 9 35 35 H 1.08996 * 109.62737 * 173.53968 * 11 10 9 36 36 H 0.97007 * 120.00083 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.62573 * 291.47974 * 21 12 11 38 38 H 1.08996 * 109.63143 * 170.89718 * 21 12 11 39 39 H 1.09004 * 109.49136 * 307.21745 * 22 9 8 40 40 H 1.09003 * 109.49279 * 67.29362 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1964 0.0005 5 6 4.2765 0.0012 -0.0046 6 6 3.5915 -1.1980 0.0011 7 6 4.3501 -2.5001 0.0018 8 6 2.2024 -1.2025 0.0005 9 7 1.5064 -2.4135 0.0016 10 6 1.6212 -3.0857 1.3027 11 6 0.7021 -4.3117 1.3236 12 7 1.0186 -5.1526 0.1592 13 6 1.2696 -6.4908 0.3059 14 1 1.9060 -7.0016 -0.4014 15 6 0.7057 -7.1906 1.3639 16 7 -0.3006 -6.6714 2.0345 17 14 1.3756 -8.8693 1.8357 18 1 2.4545 -8.7066 2.8431 19 1 0.2828 -9.6948 2.4099 20 1 1.9220 -9.5412 0.6294 21 6 1.0579 -4.5183 -1.1673 22 6 1.9629 -3.2841 -1.0900 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6584 2.1308 -0.0004 27 1 4.1194 2.1328 0.0010 28 1 5.3565 0.0053 -0.0090 29 1 4.5238 -2.8199 -1.0258 30 1 5.3065 -2.3633 0.5063 31 1 3.7686 -3.2592 0.5251 32 1 2.6527 -3.4016 1.4592 33 1 1.3272 -2.3971 2.0949 34 1 -0.3381 -3.9903 1.2714 35 1 0.8678 -4.8779 2.2400 36 1 -0.6944 -7.1603 2.7741 37 1 0.0518 -4.2168 -1.4589 38 1 1.4587 -5.2211 -1.8976 39 1 1.9167 -2.7395 -2.0331 40 1 2.9896 -3.5973 -0.9003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034197399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:40 Heat of formation + Delta-G solvation = 56.110936 kcal Electronic energy + Delta-G solvation = -20238.442922 eV Core-core repulsion = 17439.658587 eV Total energy + Delta-G solvation = -2798.784335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.50737 -38.81537 -36.13183 -34.44104 -33.40724 -31.81270 -31.18583 -29.18648 -27.58676 -27.09348 -24.59847 -24.27687 -22.16794 -21.57355 -20.91839 -18.88524 -17.55142 -16.82748 -16.67837 -16.05682 -15.90468 -15.52053 -15.38508 -15.08548 -14.62629 -14.54128 -14.25561 -13.96365 -13.76473 -13.25966 -13.23786 -13.05482 -12.64989 -12.57868 -12.51869 -12.36632 -12.24274 -12.03998 -11.84499 -11.82350 -11.61573 -11.40721 -10.60198 -9.50985 -9.42848 -9.13483 -8.66071 -7.87452 -5.33573 0.42807 0.50345 1.47207 1.48132 1.57271 2.50547 2.81670 2.96322 3.28376 3.65668 3.92492 3.95726 4.16299 4.24631 4.26573 4.40426 4.50153 4.52869 4.56867 4.64481 4.66514 4.73060 4.76650 4.85097 4.90659 4.95074 5.00774 5.04993 5.14209 5.21753 5.38585 5.47677 5.61213 5.61667 5.63560 5.67275 5.78534 6.05050 6.11011 6.37094 6.65015 7.12890 7.82480 8.38265 9.19550 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.005587 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.818097 B = 5010.477778 C = 5341.719788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.128 4.128 8 C 0.068 3.932 9 N -0.497 5.497 10 C 0.052 3.948 11 C 0.191 3.809 12 N -0.609 5.609 13 C -0.263 4.263 14 H 0.069 0.931 15 C -0.050 4.050 16 N -0.937 5.937 17 Si 0.969 3.031 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.268 1.268 21 C 0.147 3.853 22 C 0.038 3.962 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.138 0.862 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.065 0.935 34 H -0.003 1.003 35 H 0.058 0.942 36 H 0.250 0.750 37 H 0.011 0.989 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 15.497 -4.226 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.144 4.144 6 C -0.125 4.125 7 C -0.184 4.184 8 C -0.026 4.026 9 N -0.219 5.219 10 C -0.075 4.075 11 C 0.065 3.935 12 N -0.333 5.333 13 C -0.393 4.393 14 H 0.087 0.913 15 C -0.245 4.245 16 N -0.583 5.583 17 Si 0.797 3.203 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.192 1.192 21 C 0.021 3.979 22 C -0.090 4.090 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.693 15.473 -4.198 17.782 hybrid contribution 0.586 -1.372 0.553 1.592 sum 8.279 14.100 -3.644 16.752 Atomic orbital electron populations 1.20578 0.90501 1.02316 1.02199 1.20064 0.96941 0.91763 0.99092 1.21246 0.94702 0.97326 1.01090 1.21427 0.94206 0.98594 0.99403 1.21167 1.00543 0.91498 1.01236 1.20705 0.93888 0.96594 1.01308 1.21271 1.00146 0.94406 1.02573 1.18896 0.90298 0.91136 1.02257 1.59447 1.55540 1.02927 1.03950 1.22706 0.98997 0.95943 0.89899 1.20565 0.93472 0.88428 0.91051 1.44333 1.82230 1.04973 1.01786 1.19542 1.22469 0.85690 1.11576 0.91305 1.25813 0.96387 1.01387 1.00902 1.70183 1.24184 1.40205 1.23706 0.85247 0.77107 0.79687 0.78278 1.21170 1.22224 1.19246 1.21100 0.96307 0.92891 0.87563 1.22942 0.98986 0.93680 0.93380 0.91363 0.92841 0.90447 0.83625 0.83252 0.84437 0.90508 0.90384 0.91912 0.94242 0.91622 0.98535 0.92352 0.94077 0.97127 0.91899 0.90615 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.63 9.77 71.24 0.70 -1.93 16 2 C -0.08 -2.17 5.90 -19.73 -0.12 -2.29 16 3 C -0.13 -2.77 9.70 22.25 0.22 -2.55 16 4 C -0.12 -2.39 10.04 22.29 0.22 -2.17 16 5 C -0.13 -2.89 9.69 22.25 0.22 -2.67 16 6 C -0.12 -3.49 5.64 -19.74 -0.11 -3.61 16 7 C -0.13 -3.55 7.89 71.23 0.56 -2.99 16 8 C 0.07 2.17 4.65 38.21 0.18 2.35 16 9 N -0.50 -18.26 3.53 -694.34 -2.45 -20.72 16 10 C 0.05 2.11 5.29 86.38 0.46 2.57 16 11 C 0.19 9.63 5.40 86.35 0.47 10.09 16 12 N -0.61 -31.44 3.03 -698.13 -2.12 -33.56 16 13 C -0.26 -14.59 9.63 84.03 0.81 -13.78 16 14 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 15 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 16 N -0.94 -56.16 11.16 21.65 0.24 -55.92 16 17 Si 0.97 45.07 29.58 68.60 2.03 47.10 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.15 6.39 6.69 86.35 0.58 6.96 16 22 C 0.04 1.37 4.94 86.38 0.43 1.80 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.71 7.46 -2.39 -0.02 1.69 16 25 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 26 H 0.15 2.39 8.06 -2.92 -0.02 2.36 16 27 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.08 2.01 7.23 -2.38 -0.02 1.99 16 30 H 0.08 1.83 8.08 -2.39 -0.02 1.81 16 31 H 0.06 2.12 3.47 -2.38 -0.01 2.11 16 32 H 0.04 1.62 5.16 -2.39 -0.01 1.61 16 33 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.06 3.27 6.16 -2.39 -0.01 3.26 16 36 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.06 2.59 7.95 -2.39 -0.02 2.57 16 39 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 40 H 0.06 2.20 3.81 -2.39 -0.01 2.20 16 Total: -1.00 -63.97 307.18 3.74 -60.23 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.02 Total: 13.46 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.02 Total: -10.59 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.33 Total: -110.20 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.97 3.74 -60.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034197399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.339 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds