Wall clock time and date at job start Mon Mar 30 2020 04:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47036 * 2 1 4 4 C 1.46898 * 111.00003 * 199.52005 * 3 2 1 5 5 C 1.50704 * 109.47153 * 66.04614 * 4 3 2 6 6 H 1.07999 * 119.99670 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99950 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99825 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47171 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46900 * 120.00071 * 9 7 5 12 12 H 1.48505 * 109.47442 * 240.00218 * 9 7 5 13 13 C 1.38459 * 110.99939 * 75.56936 * 3 2 1 14 14 N 1.32584 * 120.28338 * 58.97056 * 13 3 2 15 15 N 1.28274 * 122.20150 * 179.72626 * 14 13 3 16 16 C 1.31902 * 122.67001 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.90209 * 179.97438 * 16 15 14 18 18 C 1.38446 * 120.18844 * 359.97438 * 16 15 14 19 19 C 1.50701 * 121.05571 * 180.02562 * 18 16 15 20 20 C 1.40110 * 117.88982 * 0.04575 * 18 16 15 21 21 C 1.43206 * 121.19222 * 179.97438 * 20 18 16 22 22 N 4.56131 * 69.46224 * 352.20968 * 2 1 3 23 23 H 1.08996 * 109.47149 * 304.87190 * 1 2 3 24 24 H 1.09002 * 109.46422 * 64.87003 * 1 2 3 25 25 H 1.08994 * 109.47503 * 184.86411 * 1 2 3 26 26 H 1.08994 * 109.47134 * 239.99698 * 2 1 3 27 27 H 1.08999 * 109.46831 * 119.99915 * 2 1 3 28 28 H 1.08998 * 109.47366 * 186.05259 * 4 3 2 29 29 H 1.09008 * 109.47167 * 306.04557 * 4 3 2 30 30 H 0.97001 * 120.00249 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47159 * 89.99799 * 17 16 15 32 32 H 1.09003 * 109.46862 * 209.99577 * 17 16 15 33 33 H 1.08994 * 109.47300 * 330.00092 * 17 16 15 34 34 H 1.09008 * 109.46726 * 90.00185 * 19 18 16 35 35 H 1.08993 * 109.47652 * 210.00218 * 19 18 16 36 36 H 1.09001 * 109.47277 * 330.00559 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4582 5 6 3.4857 1.0448 -1.9079 6 1 2.5858 0.7658 -2.4358 7 6 4.7004 1.0298 -2.5601 8 7 5.7963 1.3691 -1.9171 9 14 4.7896 0.5263 -4.3567 10 1 3.4275 0.1931 -4.8456 11 1 5.3421 1.6477 -5.1582 12 1 5.6699 -0.6617 -4.4948 13 6 1.8813 1.9601 1.2518 14 7 2.4770 1.4193 2.3057 15 7 2.3780 1.9241 3.4807 16 6 1.6791 3.0144 3.7307 17 6 1.6046 3.5533 5.1360 18 6 1.0138 3.6652 2.7056 19 6 0.2102 4.9125 2.9690 20 6 1.1110 3.1269 1.4157 21 6 0.4510 3.7422 0.3037 22 7 -0.0702 4.2320 -0.5790 23 1 -0.3633 0.5875 0.8431 24 1 -0.3632 0.4364 -0.9304 25 1 -0.3634 -1.0239 0.0871 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7854 2.4691 -0.3471 29 1 4.0248 0.7737 0.1392 30 1 6.6509 1.3582 -2.3759 31 1 2.4203 4.2579 5.2987 32 1 0.6512 4.0617 5.2802 33 1 1.6885 2.7303 5.8457 34 1 0.8503 5.7876 2.8560 35 1 -0.6138 4.9709 2.2580 36 1 -0.1868 4.8815 3.9837 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:57 Heat of formation + Delta-G solvation = 90.420337 kcal Electronic energy + Delta-G solvation = -19306.001708 eV Core-core repulsion = 16405.164797 eV Total energy + Delta-G solvation = -2900.836911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23852 -37.48856 -36.59165 -34.62995 -33.02527 -32.39100 -30.26325 -28.87673 -28.01175 -26.15952 -24.39701 -22.84883 -22.58603 -20.40596 -18.71151 -17.76036 -16.65917 -15.84397 -15.54139 -14.81090 -14.38600 -14.08169 -13.77523 -13.50792 -13.42566 -13.25941 -13.02103 -12.74452 -12.72485 -12.58968 -12.46725 -12.25667 -12.03658 -11.56981 -11.14689 -11.02327 -10.72756 -10.65721 -10.42329 -10.13448 -9.90006 -9.66398 -9.37546 -9.10929 -8.55069 -7.77419 -6.11133 -4.14068 0.40196 0.93230 2.83533 3.08371 3.28072 3.35517 3.40183 3.75792 3.82418 3.89940 4.14826 4.39796 4.40204 4.69966 4.87711 5.12012 5.19237 5.24740 5.27919 5.44357 5.51598 5.63707 5.67373 5.69665 5.79423 5.93974 5.99452 6.17598 6.27995 6.54335 6.64991 7.03645 7.19807 7.61989 7.66688 7.75081 7.97178 8.31344 8.84088 8.92085 9.50138 10.99684 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.005936 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.061321 B = 4715.968116 C = 4924.919148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 N -0.493 5.493 4 C 0.202 3.798 5 C -0.513 4.513 6 H 0.068 0.932 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.901 3.099 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.309 3.691 14 N -0.263 5.263 15 N -0.212 5.212 16 C 0.046 3.954 17 C -0.097 4.097 18 C -0.037 4.037 19 C -0.122 4.122 20 C -0.013 4.013 21 C 0.275 3.725 22 N -0.394 5.394 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.016 0.984 30 H 0.263 0.737 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 4.281 12.872 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 N -0.219 5.219 4 C 0.079 3.921 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.728 3.272 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.072 3.928 14 N -0.108 5.108 15 N -0.056 5.056 16 C -0.099 4.099 17 C -0.155 4.155 18 C -0.051 4.051 19 C -0.179 4.179 20 C -0.029 4.029 21 C -0.041 4.041 22 N -0.070 5.070 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.368 4.070 11.708 16.160 hybrid contribution 0.144 0.243 -0.834 0.881 sum -10.224 4.314 10.874 15.536 Atomic orbital electron populations 1.21809 0.96305 1.00727 1.01516 1.22142 0.94209 0.87487 1.03148 1.60329 1.27401 1.19730 1.14395 1.19880 0.78314 0.97690 0.96203 1.21086 0.93694 1.45674 0.94747 0.91417 1.24969 0.95447 0.95265 0.98625 1.69971 0.98547 1.47963 1.36724 0.86391 0.78222 0.78164 0.84383 1.19540 1.20948 1.20893 1.21868 0.88409 0.90209 0.92320 1.73508 1.16373 1.26035 0.94854 1.72676 1.11344 1.07823 1.13760 1.22598 0.95868 0.93942 0.97482 1.20684 1.03136 1.01820 0.89898 1.21048 0.95920 0.97009 0.91107 1.20972 0.99408 0.93691 1.03792 1.16924 1.00133 0.96475 0.89399 1.24627 0.93685 0.93229 0.92560 1.81161 1.08846 1.08900 1.08104 0.94299 0.92134 0.92472 0.88135 0.93589 0.95319 0.96633 0.92729 0.89834 0.90169 0.89893 0.89202 0.90670 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.07 37.16 0.37 -1.98 16 2 C 0.06 1.10 5.49 -3.82 -0.02 1.08 16 3 N -0.49 -10.73 3.87 -174.15 -0.67 -11.40 16 4 C 0.20 5.26 4.54 -4.97 -0.02 5.23 16 5 C -0.51 -14.21 8.24 -34.44 -0.28 -14.49 16 6 H 0.07 1.85 7.31 -52.49 -0.38 1.47 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.31 6.04 4.63 -154.77 -0.72 5.32 16 14 N -0.26 -5.16 10.62 31.40 0.33 -4.83 16 15 N -0.21 -3.58 11.39 33.56 0.38 -3.20 16 16 C 0.05 0.60 6.86 -82.49 -0.57 0.03 16 17 C -0.10 -0.77 9.81 36.00 0.35 -0.42 16 18 C -0.04 -0.47 5.96 -103.84 -0.62 -1.09 16 19 C -0.12 -1.03 9.31 36.01 0.34 -0.69 16 20 C -0.01 -0.22 5.79 -106.31 -0.62 -0.84 16 21 C 0.28 4.83 13.64 -22.47 -0.31 4.52 16 22 N -0.39 -7.38 18.54 41.84 0.78 -6.60 16 23 H 0.04 0.61 7.59 -51.93 -0.39 0.22 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 2.08 6.58 -51.93 -0.34 1.74 16 27 H 0.05 0.89 7.42 -51.93 -0.39 0.51 16 28 H 0.03 0.81 8.05 -51.93 -0.42 0.40 16 29 H 0.02 0.44 8.12 -51.92 -0.42 0.02 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.42 6.04 -51.93 -0.31 0.11 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 0.67 7.25 -51.93 -0.38 0.29 16 36 H 0.09 0.49 6.06 -51.93 -0.31 0.17 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -31.79 311.80 -5.55 -37.34 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -4.60 Total: -5.12 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.18 Total: -1.75 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 1.55 Total: -51.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.79 -5.55 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.764 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds