Wall clock time and date at job start Mon Mar 30 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47036 * 2 1 4 4 C 1.46898 * 111.00003 * 199.52005 * 3 2 1 5 5 C 1.50704 * 109.47153 * 66.04614 * 4 3 2 6 6 H 1.07999 * 119.99670 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99950 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99825 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47171 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46900 * 120.00071 * 9 7 5 12 12 H 1.48505 * 109.47442 * 240.00218 * 9 7 5 13 13 C 1.38459 * 110.99939 * 75.56936 * 3 2 1 14 14 N 1.32584 * 120.28338 * 58.97056 * 13 3 2 15 15 N 1.28274 * 122.20150 * 179.72626 * 14 13 3 16 16 C 1.31902 * 122.67001 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.90209 * 179.97438 * 16 15 14 18 18 C 1.38446 * 120.18844 * 359.97438 * 16 15 14 19 19 C 1.50701 * 121.05571 * 180.02562 * 18 16 15 20 20 C 1.40110 * 117.88982 * 0.04575 * 18 16 15 21 21 C 1.43206 * 121.19222 * 179.97438 * 20 18 16 22 22 N 4.56131 * 69.46224 * 352.20968 * 2 1 3 23 23 H 1.08996 * 109.47149 * 304.87190 * 1 2 3 24 24 H 1.09002 * 109.46422 * 64.87003 * 1 2 3 25 25 H 1.08994 * 109.47503 * 184.86411 * 1 2 3 26 26 H 1.08994 * 109.47134 * 239.99698 * 2 1 3 27 27 H 1.08999 * 109.46831 * 119.99915 * 2 1 3 28 28 H 1.08998 * 109.47366 * 186.05259 * 4 3 2 29 29 H 1.09008 * 109.47167 * 306.04557 * 4 3 2 30 30 H 0.97001 * 120.00249 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47159 * 89.99799 * 17 16 15 32 32 H 1.09003 * 109.46862 * 209.99577 * 17 16 15 33 33 H 1.08994 * 109.47300 * 330.00092 * 17 16 15 34 34 H 1.09008 * 109.46726 * 90.00185 * 19 18 16 35 35 H 1.08993 * 109.47652 * 210.00218 * 19 18 16 36 36 H 1.09001 * 109.47277 * 330.00559 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4582 5 6 3.4857 1.0448 -1.9079 6 1 2.5858 0.7658 -2.4358 7 6 4.7004 1.0298 -2.5601 8 7 5.7963 1.3691 -1.9171 9 14 4.7896 0.5263 -4.3567 10 1 3.4275 0.1931 -4.8456 11 1 5.3421 1.6477 -5.1582 12 1 5.6699 -0.6617 -4.4948 13 6 1.8813 1.9601 1.2518 14 7 2.4770 1.4193 2.3057 15 7 2.3780 1.9241 3.4807 16 6 1.6791 3.0144 3.7307 17 6 1.6046 3.5533 5.1360 18 6 1.0138 3.6652 2.7056 19 6 0.2102 4.9125 2.9690 20 6 1.1110 3.1269 1.4157 21 6 0.4510 3.7422 0.3037 22 7 -0.0702 4.2320 -0.5790 23 1 -0.3633 0.5875 0.8431 24 1 -0.3632 0.4364 -0.9304 25 1 -0.3634 -1.0239 0.0871 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7854 2.4691 -0.3471 29 1 4.0248 0.7737 0.1392 30 1 6.6509 1.3582 -2.3759 31 1 2.4203 4.2579 5.2987 32 1 0.6512 4.0617 5.2802 33 1 1.6885 2.7303 5.8457 34 1 0.8503 5.7876 2.8560 35 1 -0.6138 4.9709 2.2580 36 1 -0.1868 4.8815 3.9837 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:56 Heat of formation + Delta-G solvation = 69.435094 kcal Electronic energy + Delta-G solvation = -19306.911696 eV Core-core repulsion = 16405.164797 eV Total energy + Delta-G solvation = -2901.746899 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.51912 -39.03070 -37.96821 -35.81091 -34.96437 -33.79127 -31.79905 -29.99012 -29.31322 -27.79079 -25.50472 -24.53001 -24.20779 -21.85479 -20.02357 -18.98275 -18.66509 -17.44309 -17.08085 -16.45932 -15.67285 -15.47405 -15.05025 -14.78496 -14.73661 -14.44238 -14.27088 -14.21658 -14.08129 -13.87772 -13.66607 -13.47766 -13.02869 -12.96079 -12.80332 -12.67765 -12.48837 -12.14459 -12.06019 -11.92705 -11.52367 -11.07745 -10.85157 -10.69912 -10.42793 -9.49499 -8.28025 -6.39325 -0.83686 -0.29598 1.38592 1.39161 1.45372 1.52984 1.75896 2.31749 2.46106 2.54737 2.56582 3.00664 3.06013 3.34340 3.63010 3.68983 4.04809 4.15754 4.31496 4.38894 4.56585 4.60811 4.70244 4.75745 4.85494 4.90626 4.91576 5.01399 5.02821 5.10451 5.14450 5.27995 5.43424 5.56275 5.89165 5.92330 6.26368 6.41404 6.73451 7.29982 7.57432 8.84020 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.005936 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.061321 B = 4715.968116 C = 4924.919148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 N -0.496 5.496 4 C 0.225 3.775 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.973 3.027 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.274 1.274 13 C 0.282 3.718 14 N -0.300 5.300 15 N -0.240 5.240 16 C 0.060 3.940 17 C -0.097 4.097 18 C -0.010 4.010 19 C -0.123 4.123 20 C -0.034 4.034 21 C 0.289 3.711 22 N -0.421 5.421 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.040 0.960 28 H -0.005 1.005 29 H -0.018 1.018 30 H 0.267 0.733 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 5.466 14.230 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 N -0.221 5.221 4 C 0.100 3.900 5 C -0.564 4.564 6 H 0.086 0.914 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.044 3.956 14 N -0.143 5.143 15 N -0.082 5.082 16 C -0.086 4.086 17 C -0.155 4.155 18 C -0.024 4.024 19 C -0.179 4.179 20 C -0.049 4.049 21 C -0.027 4.027 22 N -0.097 5.097 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.013 0.987 29 H 0.000 1.000 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.190 5.240 13.089 18.638 hybrid contribution 0.677 -0.031 -1.031 1.234 sum -11.513 5.208 12.058 17.466 Atomic orbital electron populations 1.21690 0.93320 1.02581 1.01302 1.22154 0.96559 0.86428 1.01845 1.60198 1.24342 1.20934 1.16654 1.19339 0.80740 0.94498 0.95378 1.21365 0.93907 1.45601 0.95560 0.91403 1.25913 0.94943 0.95017 1.03398 1.70100 0.99219 1.49005 1.38778 0.85284 0.78615 0.77970 0.78471 1.18620 1.20480 1.19950 1.21785 0.90622 0.91701 0.91528 1.73383 1.17643 1.27559 0.95738 1.72601 1.13064 1.10009 1.12520 1.23484 0.93186 0.92017 0.99940 1.20970 1.05948 1.02468 0.86089 1.21614 0.94269 0.97506 0.89035 1.21228 0.98917 0.91508 1.06225 1.17026 1.00855 0.96110 0.90909 1.24746 0.93010 0.92591 0.92358 1.81158 1.10039 1.09971 1.08540 0.93878 0.92734 0.89623 0.90052 0.94170 0.98726 1.00011 0.92435 0.87965 0.86271 0.89431 0.87244 0.90843 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 10.07 71.98 0.72 -3.50 16 2 C 0.06 2.30 5.49 86.30 0.47 2.77 16 3 N -0.50 -22.70 3.87 -704.88 -2.72 -25.42 16 4 C 0.22 12.50 4.54 85.56 0.39 12.88 16 5 C -0.53 -30.31 8.24 25.60 0.21 -30.09 16 6 H 0.07 3.82 7.31 -2.91 -0.02 3.80 16 7 C 0.01 0.35 5.46 84.66 0.46 0.81 16 8 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 9 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.28 11.41 4.63 133.60 0.62 12.03 16 14 N -0.30 -12.24 10.62 -54.58 -0.58 -12.81 16 15 N -0.24 -8.03 11.39 -47.74 -0.54 -8.58 16 16 C 0.06 1.41 6.86 42.60 0.29 1.70 16 17 C -0.10 -1.09 9.81 71.24 0.70 -0.39 16 18 C -0.01 -0.22 5.96 -19.36 -0.12 -0.34 16 19 C -0.12 -1.51 9.31 71.24 0.66 -0.84 16 20 C -0.03 -1.11 5.79 -20.96 -0.12 -1.24 16 21 C 0.29 10.08 13.64 88.33 1.20 11.29 16 22 N -0.42 -15.71 18.54 19.01 0.35 -15.36 16 23 H 0.04 1.33 7.59 -2.39 -0.02 1.32 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.08 3.55 6.58 -2.39 -0.02 3.53 16 27 H 0.04 1.65 7.42 -2.39 -0.02 1.63 16 28 H -0.01 -0.33 8.05 -2.39 -0.02 -0.35 16 29 H -0.02 -1.09 8.12 -2.38 -0.02 -1.11 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.12 0.46 6.04 -2.39 -0.01 0.44 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 1.03 7.25 -2.39 -0.02 1.01 16 36 H 0.13 0.56 6.06 -2.39 -0.01 0.55 16 Total: -1.00 -74.33 311.80 5.41 -68.92 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: 1.10 Total: -2.09 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.50 Total: 5.08 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -3.21 Total: -118.82 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -74.33 5.41 -68.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.353 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds